BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18090.1
Length=3111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931690 jgi|Araly1|931690|scaffold_304147.1 3847 0.0
Ahg937974 jgi|Araly1|937974|scaffold_502165.1 202 1e-50
> Ahg931690 jgi|Araly1|931690|scaffold_304147.1
Length=2528
Score = 3847 bits (2083), Expect = 0.0
Identities = 2378/2518 (94%), Gaps = 30/2518 (1%)
Strand=Plus/Plus
Query 186 CGATGCCGGAAATCGATCTTATGAGAGTCGATCATTGTGTTTCCGATGTTAAATTAGATG 245
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 22 CGATGCCGGAAATCGATCTTATGAGAGTCGATCAATGTGTTTCCGATGTTAAATTGGATT 81
Query 246 ATTCTTCTTCT--T-CT---CCTCCGGGATTCTTCGATGGTGGTGGTGTTCCGTTAGAT- 298
|||||||||| | | ||||| |||||||||||||||||| | |||| | |||||
Sbjct 82 CTTCTTCTTCTCCTATTGAACCTCCTGGATTCTTCGATGGTGGT-G-GTTCTG-TAGATG 138
Query 299 TCGGATGTGAAGTTAGACGAAGAAGATTCCGATTCTTTGAAGAAGAGAGGTAGACGTGGT 358
|| ||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 139 TC-GATTTGAAGTTAGATGAACAAGATTCCGATTGTTTGAAGAAGAGAGGTAGACGTGGC 197
Query 359 CGTCCGCCGAGAA-TTT-TAGCTAAAGCTTCTTCGCCTCCGATTTCGAGGAAGAGAAGAG 416
||||| ||||||| ||| | | |||||||||||| |||||||||||||||||||||||||
Sbjct 198 CGTCCACCGAGAACTTTGT-G-TAAAGCTTCTTCTCCTCCGATTTCGAGGAAGAGAAGAG 255
Query 417 AAGATGAAGATGTTTGCTTTGTTTGCTTCGATGGTGGTAGTCTTGTTCTCTGCGATCGTA 476
|||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 256 AAGATGAAGATGTTTGTTTTGTGTGCTTTGATGGTGGTAGTCTTGTACTTTGCGATCGTA 315
Query 477 GGGGATGTCCAAAGGCTTATCACCCAGCTTGTGTTAAGCGTACTGAAGCATTCTTCAGAT 536
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GGGGATGTCCAAAAGCGTATCACCCAGCTTGTGTTAAGCGTACTGAAGCATTCTTCAGAT 375
Query 537 CGAGATCTAAATGGAATTGTGGTTGGCACATATGTACTACTTGTCAAAAGGATTCGTTCT 596
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 376 CAAGATCTAAATGGAATTGTGGTTGGCATATATGTACTACTTGTCAAAAGGATTCCTTCT 435
Query 597 ACATGTGTTATACTTGTCCGTATTCAGTTTGTAAGAGGTGTGTTAGAAGCTCAGAGTATG 656
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 436 ACATGTGTTATACTTGTCCGTATTCAGTTTGTAAGAGATGTGTTAGAAGCTCGGAGTATG 495
Query 657 TAGTTGTAAGGGAGAACAAAGGATTCTGTGGAATTTGTATGAAGACTATAATGCTTATTG 716
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 496 TAGTTGTAAGGGAAAACAAAGGATTCTGTGGAATTTGCATGAAGACTATAATGCTTATTG 555
Query 717 AGAATGCAGCTGAAGCTAACAAAGAAAAGGTTCAGGTTGATTTTGATGATCAAGGCAGCT 776
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 556 AGAATGCAGCTGAAGCTAACAAAGAAAAGGTTCAGGTCGATTTTGATGATCAAGGCAGCT 615
Query 777 GGGAGTATCTTTTTAAGATTTACTGGGTTTCTCTTAAAGAAAAGCTAGGTTTATCGTTAG 836
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GGGAGTATCTGTTTAAGATTTACTGGGTTTCTCTTAAAGAAAAGCTAGGTTTATCGTTAG 675
Query 837 ATGATCTTACCAAAGCAAAAAATCCATGGAAATCTTCTTCTTCTACTGCCGCTAAGCGAA 896
|||||||||| ||||||| ||||||||||||||||||||| || |||| |||||||||
Sbjct 676 ATGATCTTACGAAAGCAAGAAATCCATGGAAATCTTCTTCGTCGACTGTTTCTAAGCGAA 735
Query 897 GAACTACTAGTCGGGTTCATGAAAAGGATGATGGAAATTCTCCTGGGGTTATGAAAATAC 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 736 GAACTACTAGTCGGGTTCATGAAAAGGATGATGGAAATTCTCCTGGGGTTATGAAAGTAC 795
Query 957 GTCGTGCTAAAGTAAGGAAAATGGATGCTGTTTCTGTGAGTAATTTGGGTCCTTCTTTGG 1016
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 796 GTCGTGCTAAAGTAAGGAAAATGGAAGCTGTTTCTGTTAGTAATTTGGGTCCTTCTATGG 855
Query 1017 ATTCAAACTGTTCTTTGGGTGACAGACTTCCACAATTGACTAGTGCTGCTACTTGGGCAA 1076
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 856 ATTCAAACAGTTCTTTGGGTGACAGACTTCCACCATTGACTAGTGCTGCTACTTGGGCAA 915
Query 1077 CCA-ATGAGCTTTTGGACTTTGTGGGGTATATGAAAAACGGTGATATTTCTGTCTTATCA 1135
|| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 916 -CAGATGAGCTCTTGGACTTTGTTGGGTATATGAAAAACGGTGATATTTCTGTCTTATCA 974
Query 1136 AAGTATGATGTCCAAACTCTCGTGCTAGAGTATGTGAGACGGAATAATCTACAAAACTCT 1195
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 975 AAGTATGATGTCCAAACTCTCGTTCTAGAGTATGTGAGACGGAATAATCTACAAAACTCT 1034
Query 1196 CCTCAGAATTCTGAAATAATGTGTGACTCC-AAGCTTATGAGATTGTTTGGAAAGGAGCG 1254
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1035 CCTCAGAATTCTGAAATAATGTGTGAC-CCTAAGCTTATGAGATTGTTTGGAAAGGAGCG 1093
Query 1255 AGTGGACAACTTGGAAATGTTAAAGCTTCTTGATTCTCACTTCATCGATCAAGTTAGGTC 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1094 AGTGGACAACTTGGAAATGTTAAAGCTTCTTGATTCTCACTTCATCGATCAAGTGAGGTC 1153
Query 1315 TCCAGTCACAGATAATTCAGCCGGAGGAGTCACTGAAACTATGTCTTACCAGGTTAATGC 1374
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1154 TCCAGTCACAGATAACTCAGCCGGAGGAGTCACTGAAACTATGTCTTTCCAGGTCAATGC 1213
Query 1375 GGGCAGAAGCTGTGATAGG-TTAAATACATCTGAACAGCATCAAGAAGGGGAATCACAGC 1433
| ||| ||||||| ||||| || |||||||||||||||||||||||||| || || ||||
Sbjct 1214 GAGCAAAAGCTGTAATAGGCTT-AATACATCTGAACAGCATCAAGAAGGAGAGTCGCAGC 1272
Query 1434 AATTGAACGGGCACAGTATTCAAGTTAGACCTTCCAGTTCTGATAGCAGAAACCATGCAG 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1273 AATTGAACGGGCACAGTATTCAAGTTAGACCTTCCAGTTCTGATAGCAGAAACCATGCCG 1332
Query 1494 TTGTAAAACCTGACACAAGTGCCACTCTGTCCAATAAGCCAATTGATGGTTTGGATACAA 1553
| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1333 TGGTAAAACCTGACACATGTGCCACTCTGTCCAATAAGCCAATCGATGGCTTGGATACGA 1392
Query 1554 ATATGGTATGGTTATATGGAGATCCAGATGGGAAGATTCATGGACCATTTTCGTTATATA 1613
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1393 ATATGGTGTGGTTATATGGGGATCCAGATGGGAAGATTCATGGACCATTTTCCTTATATA 1452
Query 1614 ACCTGCGACAATGGAATTCAAGCGGGCATTTCCCACCAGAGCTGAGAATATGGAGGTTGG 1673
|||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1453 ACCTGCGACAATGGAATTTGAGCGGGCATTTCCCTCCGGAGCTGAGAATATGGAGGTTGG 1512
Query 1674 GTGAACAGCAACACAGCTCCATACTTTTGACTGACGCATTAAATGGGCAGTTCCATAAAA 1733
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1513 GTGAACAGCAAAACAGCTCCATACTTTTGACCGACGCATTAAATGGGCAGTTCCATAAAA 1572
Query 1734 CAGGGTTATTACAGAATCATTCTATCCCCAAGCAGGAAGTGACAGCTACTATAGCTAACG 1793
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1573 CAGGGTTATTACAGAATCATTCGATCCCCAAGCAGGATGTGACAGCTACTATAGCTAACG 1632
Query 1794 ATCAAAACAGGTCTGTGGCTGTTCCTAAAATAGAGAGTAGAATACTTGACTTCAGCCCCA 1853
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 ATCAAAACAGGCCTGTGGCTGTTCCTAAAATAGAGAGTAGAATACTTGACTTCAGCCCCA 1692
Query 1854 ACTCAGTGTGCACTGACCAGAGTGTTATTTCTAGCAGTAACAGTGTCATCACAAGGAGCT 1913
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1693 ACTCAGTGTGCACTGACCAGAGTGTCATTTCTAGCAGTAACAGTGTCATCACAAGGAGCT 1752
Query 1914 CGGATGTGAGTAACAAAAGCGGAAACAATTGTAGCCACGCCGTGCCATTGGATTTTTCTC 1973
|||||||||||||||||||||||||||||| || || | || ||||||| ||||||||||
Sbjct 1753 CGGATGTGAGTAACAAAAGCGGAAACAATTTTAACCGCACCATGCCATTAGATTTTTCTC 1812
Query 1974 TTTCTAATGAAAGGGATACTGTGGGTTTTATCTCTCTCTGGGACAAAAGAAAAGTTGAAA 2033
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 1813 TTTCTAATGAAAGGGATACTGTGGGTTCTGTCTCTCTCTGGAACAAAAGAAAAGTTGAAA 1872
Query 2034 GTTCTTTGCTTGTACAAAGCCCAATAAGCTGTTCACTCTCGCTGGCTACATTACCTAGAA 2093
|| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1873 GTCCTTTGCTTGTACAAAGCCCAATAAGCTGTTCACTTTCGCTTGCTACATTACCCAGAA 1932
Query 2094 ACTCAAACTGCTCTCTGCCACCACATGAAAGATGG-AGTGCTGGT----CAGA--CAGAT 2146
||||||||||||||||||||||||||||||||||| || |||||| |||| | |||
Sbjct 1933 ACTCAAACTGCTCTCTGCCACCACATGAAAGATGGAAG-GCTGGTCAAACAGATCCGGAT 1991
Query 2147 GGAAACAGTGCAGCAACGACTGCTTGCAATCAAAACGGTAGTCTTAGCGGCTCAGCTGAG 2206
||||||| |||||||| || ||||| |||||||||||||||||||| |||| ||||||||
Sbjct 1992 GGAAACAATGCAGCAATGAATGCTTACAATCAAAACGGTAGTCTTAACGGCACAGCTGAG 2051
Query 2207 AAACAAGTCACGGCTACAGTCCAGTCATGTGGACAGAACTGGAATGCTGCAACTCCAAGC 2266
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2052 AAACAAGTCACGGCTACAGTCCAGTCTTGCGGACAGAACTGGAATGCTGCAACTCCAAGC 2111
Query 2267 AGTGCTTCAAATGTGTGGGATTCGAACTCGGGTTTGACGTCTTTCCCAGACAATCAAGAA 2326
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2112 AGTGCTTCGAATATGTGGGATTCTAACTCGGGTTTGACGTCTTTCCCAGACAATCAAGAA 2171
Query 2327 ATAGACTTTTTAGATCTCTTTAGTCCAACTTTCAAATTCAACTTTGCATCTACTACCACT 2386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2172 ATAGACTTTTTAGATCTCTTTAGTCCAACTTTCAAATTCAACTTTGCATCTACTACCACG 2231
Query 2387 GATTGGCAACCCATTGTGGCTGGACCTGACGAATGCGACGAATCAGTCTCAGATCTTTTG 2446
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2232 GATTGGCAACCCATTGTGGCTGGACCTGACGAATGTGACGAATCAGTCTCGGATCTTTTG 2291
Query 2447 GCAGAAGTGGAAGCCATGGAGTCCCAAAAACGTCTTCCTTCTCCAACTTCGACATTCCGT 2506
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2292 GCAGAAGTGGAAGCCATGGAGTCCCAAAAACGTCTTCCTTCTCCAACTTCAACATTCCGT 2351
Query 2507 GGTCCTGAAGAATTATTAATCCGGCACTCAATAAACGATAGCTTCAGTCCCGCAGAAGGA 2566
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2352 GGTCCTGAAGAATTATTGATCCGGCACTCTATAAACGATAGCTTCAGTCCCGCTGAAGGA 2411
Query 2567 CATAGCCCAGCACTAGATGTAAGCAAAGGTGACTCCATGAGCTCCACAAACGATCTTCAA 2626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2412 CATAGCCCAGCACTAGATGTAAGCAAAGGTGACTCCATGAGCTCCACAAACGATCTGCAA 2471
Query 2627 ATGCATTCACGATCTAACAGCACCGTGCATTTTTAGTCGTGGGCTCGGGTTCACATAG 2684
||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 2472 ATGCATTCACGATCTAACAACACCGTGCATTTTTAGTCGTGGGCTCGG-TTCACTTAG 2528
> Ahg937974 jgi|Araly1|937974|scaffold_502165.1
Length=3922
Score = 202 bits (109), Expect = 1e-50
Identities = 363/481 (75%), Gaps = 36/481 (7%)
Strand=Plus/Plus
Query 405 GGAAGAGAAGAGAA-GATGAAGATGTTTGCTTTGTTTGCTTCGATGGTGGTAG-TCTTGT 462
||||| || || || || |||||||||||||| |||||||||| ||||| || || ||
Sbjct 334 GGAAG-GACGACAAGGAAGAAGATGTTTGCTTCATTTGCTTCGACGGTGG-AGACCTCGT 391
Query 463 TCTCTGCGATCGTAGGGGA-TGTCCAAAGGCTTATCACCCAGCTTGTGTTAAGCGTA-CT 520
|||||| ||||| || | || || ||||| || || ||||||||| ||||| | | |
Sbjct 392 TCTCTGTGATCG-CCGGAATTGCCCCAAGGCATACCATCCAGCTTGTATTAAGAG-AGAT 449
Query 521 GAAGCATTCTTCAGATCGA-GATCTAAATGGAATTGTGGTTGGCACATATGTACTACTTG 579
|| ||||||||| || | | | ||||||||||||||||||||||||||||| ||| ||
Sbjct 450 GAGGCATTCTTCCGAACAACG-GCTAAATGGAATTGTGGTTGGCACATATGTGGTACATG 508
Query 580 TCAAAAGGATTC--GTTCTACATGTGTTATACTTGTC-CGTATTCAGTTTGTAAGAGGTG 636
||||||| ||| ||| ||||||||||||| || | | | ||| ||||||||| ||||
Sbjct 509 CCAAAAGGCTTCCAGTT--ACATGTGTTATACATG-CACTTTTTCCGTTTGTAAGCGGTG 565
Query 637 TGTTAGAAGCT-CAGAGTATGT-AGTTGTAAG-GGAGAACAAAGGA-TTCTGTGGAATTT 692
||| ||| | | || ||||| | |||| || || |||| || || ||||| | |
Sbjct 566 CATTA-AAGATGCCGACTATGTGA-TTGTGAGAGGT-AACATGGGTCTT-TGTGGCACAT 621
Query 693 GTATGAAGACTATAATGCTTATTGAGAATGCAGCTGAAGCTA-ACAAAGAAA-AGGTTCA 750
|||| ||| |||||||||| ||||||||| ||| ||| | | || ||| || || |
Sbjct 622 GTATTAAGCCTATAATGCTGATTGAGAATATTGCTCAAGG-AGATAATGAAGCAG-TTAA 679
Query 751 GGTTGATTTTGATGATCAAGGC--AGCTGGGAGTATCTTTTTAAGATTTACTGGGTTT-C 807
||| ||||||||||| |||| | || ||||| ||||| || ||| | || ||| ||| |
Sbjct 680 GGTGGATTTTGATGA-CAAG-CTTAGTTGGGAATATCTATTCAAGGTATATTGGCTTTGC 737
Query 808 TCTTAAAGAAAAGCTAGGTTTATC-GTTAGATGATCTTACCAAAGCAAAAAATCCATGGA 866
|| || ||| | ||| | || | || ||||| ||||| |||||||| ||||| ||||
Sbjct 738 -CTGAAGGAAGATCTATCTCTAACTGTC-GATGAGCTTACTAAAGCAAATAATCCTTGGA 795
Query 867 A 867
|
Sbjct 796 A 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117508405825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5