BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18110.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319762 jgi|Araly1|319762|fgenesh1_pm.C_scaffold_3002778 1112 0.0
Ahg473244 jgi|Araly1|473244|fgenesh2_kg.1__3198__AT1G30230.2 1068 0.0
> Ahg319762 jgi|Araly1|319762|fgenesh1_pm.C_scaffold_3002778
Length=759
Score = 1112 bits (602), Expect = 0.0
Identities = 666/697 (96%), Gaps = 4/697 (1%)
Strand=Plus/Plus
Query 84 ATGGCGGCTTTCCCCAACCTCAACTCTGGC-TCCGGATTGAAGAAGCTCGATGAGCATCT 142
||||| || |||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct 1 ATGGCAGCATTCCCCAACCTCAACTCT-GCTTCTGGTTTGAAGAAGCTCGATGAGCATCT 59
Query 143 TCTCACTCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGATATCACTGTGTTTAC 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 TCTCACTCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGATATCACTGTCTTTAC 119
Query 203 AGCTCTTTCAAAGCCCCCAACTTCAGAGTTTGTCAATGTATCTCGTTGGTTCAACCACAT 262
| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 120 ATCTCTTTCAAAGCCCCCAACTTCAGAGTATGTGAATGTTTCTCGTTGGTTCAACCACAT 179
Query 263 CGATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGTGGTGTCATTGTTGAAGG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 CGATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGTGGTGTCATTGTTGA-GG 238
Query 323 G-TCATCACCTATCACAGAAGAGGCTGTTGCTACTCCCCCTGCAGCTGATTCTAAGGATA 381
| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 GATCATCACCGATCACAGAAGAGGCTGTTGCTTCTCCCCCTGCAGCTGATTCTAAGGATA 298
Query 382 CTGCTGCTGAAGAAGAAGATGATGATGATGTTGACCTTTTCGGGGAGGAGACCGAAGAGG 441
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 299 CTGCGGCTGATGAAGATGATGATGATGATGTTGACCTTTTCGGGGAGGAGACTGAAGAAG 358
Query 442 AAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCTGTGAAGGCATCTACAAAGAAGAAAGAAT 501
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 359 AAAAGAAAGCTGCTGAAGAGAGAGCTGCTTCTGTGAAGGCATCTACAAAGAAGAAGGAAT 418
Query 502 CCGGAAAGTCATCAGTTTTGATGGATATCAAGCCGTGGGATGATGAGACGGACATGAAGA 561
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 419 CCGGAAAGTCATCAGTTTTAATTGATATCAAGCCGTGGGATGATGAGACCGACATGAAGA 478
Query 562 AGCTAGAGGAAGCTGTAAGATCCATTCAGATGGAAGGATTGTTTTGGGGAGCATCAAAGC 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGCTAGAGGAAGCTGTAAGATCCATTCAGATGGAAGGATTGTTTTGGGGAGCATCAAAGC 538
Query 622 TTGTACCCGTTGGTTACGGTATCAAGAAGTTGCACATCATGTGCACCATTGTTGATGACC 681
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 539 TTGTACCAGTTGGTTACGGTATCAAGAAATTGCAGATCATGTGCACCATTGTTGATGACC 598
Query 682 TTGTATCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATG 741
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 599 TTGTGTCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCAATCAATGAATTTG 658
Query 742 TCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATG 778
|||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATG 695
> Ahg473244 jgi|Araly1|473244|fgenesh2_kg.1__3198__AT1G30230.2
Length=840
Score = 1068 bits (578), Expect = 0.0
Identities = 727/798 (91%), Gaps = 14/798 (2%)
Strand=Plus/Plus
Query 55 CAGTGAAAAAGTTTCGAGCTTTAGAAACAATGGCGGCTTTCCCCAACCTCAACTCTGGCT 114
||||||||||| ||||||||| ||||| |||||| || ||||| ||||| ||||||| |
Sbjct 7 CAGTGAAAAAGGTTCGAGCTTCAGAAATAATGGCAGCATTCCCAAACCTTAACTCTGATT 66
Query 115 CCGGATTGAAGAAGCTCGATGAGCATCTTCTCACTCGCAGTTACATCACTGGGTACCAAG 174
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 67 CTGGATTGAAGAAGCTCGATGAGCATCTTCTCACTCGCAGTTACATCACTGGGTACCAGG 126
Query 175 CTTCAAAGGATGATATCACTGTGTTTACAGCTCTTTCAAAGCCCCCAACTTCAGAGTTTG 234
|||||||||| ||||||||||| ||| |||||||| ||||||||||||||||| ||| ||
Sbjct 127 CTTCAAAGGACGATATCACTGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTATG 186
Query 235 TCAATGTATCTCGTTGGTTCAACCACATCGATGCCCTCTTGAGGATCTCTGGTGTCTCTG 294
| || | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 187 TGAACGCATCTCGTTGGTACAACCACATTGATGCCCTCTTGAGGATCTCTGGTGTCTCTG 246
Query 295 CTGAAGGAAGTGGTGTCATTGTTGAAGGG-TCATCACCTATCACAGAAGAGGCTGTTGCT 353
|||||||||| |||||||||||||| ||| ||| | |||||||| || ||||||||||||
Sbjct 247 CTGAAGGAAGCGGTGTCATTGTTGA-GGGATCAGCCCCTATCACTGAGGAGGCTGTTGCT 305
Query 354 ACTCCCCCTGCAGCTGATTCTAAGGATACTGCTGCTGAAGAAGAAGATGATGATGATGTT 413
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 306 ACTCCCCCTGCAGCTGATTCTAAGGATGCTGCGGCTGATGAAGAAGATGATGATGATGTT 365
Query 414 GACCTTTTCGGGGAGGAGACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCT 473
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GACCTTTTCGGAGAGGAAACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCT 425
Query 474 GTGAAGGCATCTACAAAGAAGAAAGAATCCGGAAAGTCATCAGTTTTGATGGATATCAAG 533
|| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct 426 GTCAAGGCATCTACAAAGAAGAAGGAATCTGGAAAGTCCTCAGTTTTGATTGATATCAAG 485
Query 534 CCGTGGGATGATGAGACGGACATGAAGAAGCTAGAGGAAGCTGTAAGATCCATTCAGATG 593
|| |||||||||||||| |||||||||||| |||||||||| || |||||||||||||||
Sbjct 486 CCATGGGATGATGAGACTGACATGAAGAAGTTAGAGGAAGCAGTGAGATCCATTCAGATG 545
Query 594 GAAGGATTGTTTTGGGGAGCATCAAAGCTTGTACCC-GTTGGTTACGGTATCAAGAAGTT 652
||||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 546 GAAGGTTTGTTTTGGGGAGCATCAAAGCTTGT-CCCAGTTGGTTATGGTATCAAGAAGTT 604
Query 653 GCACATCATGTGCACCATTGTTGATGACCTTGTATCTATCGACACCATGATCGAAGAGCA 712
||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 605 GCAGATTATGTGCACCATTGTTGATGACCTTGTCTCTATTGACACCATGATCGAAGAGCA 664
Query 713 ACTCACTGTTGAACCGATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAA 772
|||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 665 ACTCACAGTTGAACCAATCAATGAATACGTCCAGAGCTGTGACATTGTTGCCTTCAACAA 724
Query 773 GATATG-AGGATGGAGAATAGCTTGAAGGAA-GAACTGT-TTAT-GTTGT-TG-TT-TTC 825
|||||| |||||||||||| |||| ||||| | |||| || | ||||| || || |||
Sbjct 725 GATATGTAGGATGGAGAAT-GCTTCAAGGATTGT-CTGTGTTCTTGTTGTCTGGTTCTTC 782
Query 826 TTCT-CTATATCCAGTTT 842
|||| |||||| ||||||
Sbjct 783 TTCTTCTATATTCAGTTT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5