BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18115.1

Length=891
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319763 jgi|Araly1|319763|fgenesh1_pm.C_scaffold_3002779           265    5e-70


> Ahg319763 jgi|Araly1|319763|fgenesh1_pm.C_scaffold_3002779
Length=594

 Score =  265 bits (143),  Expect = 5e-70
 Identities = 221/256 (86%), Gaps = 15/256 (6%)
 Strand=Plus/Plus

Query  115  ATGTCAAGCTTTGTGGTGTTCTTGTTAGGTTCTGGTGCTGTGTTG-T--TGTTGAGTTCA  171
            |||||||||||||||||||||||||||| || ||||| ||||||| |  |||||||||||
Sbjct  1    ATGTCAAGCTTTGTGGTGTTCTTGTTAGTTTTTGGTGTTGTGTTGTTGCTGTTGAGTTCA  60

Query  172  AGCTCTGTCCACGGGCTGCGATATAGACCCGTGAGGAGATAT-TTTAATAGTAGTGATCA  230
            |||||||| ||||| ||||||||||||||||||||||||  | |||||||||| ||||||
Sbjct  61   AGCTCTGTTCACGGACTGCGATATAGACCCGTGAGGAGA-GTCTTTAATAGTACTGATCA  119

Query  231  ATCTTCCGTTTTGGGTTCCAACAAAACGTTTGAAAGTGGTGGACATAACAAAGCACGAAG  290
            |||||||||||||||||||||||||| ||||||||||||   | ||||||||||||||||
Sbjct  120  ATCTTCCGTTTTGGGTTCCAACAAAATGTTTGAAAGTGG---ATATAACAAAGCACGAAG  176

Query  291  AGTGCAAGAAGGTGATGTAGAAGAAGGAGGCTGCGAAA-TCTGCAGAGGAAGAGAAAGA-  348
            ||||||||||||| ||||||| | || |  ||| | |  | || || ||  ||||| || 
Sbjct  177  AGTGCAAGAAGGTAATGTAGATGGAG-A--CTGTGGAGGT-TGTAGCGGTGGAGAAGGAA  232

Query  349  GACTGTGGAGGTTGTA  364
            | ||||||||||||||
Sbjct  233  G-CTGTGGAGGTTGTA  247


 Score =  163 bits (88),  Expect = 2e-39
 Identities = 152/180 (84%), Gaps = 16/180 (9%)
 Strand=Plus/Plus

Query  347  GAGACTGTGGAGGTTGTACCGGTGGAGAAGGAAGCTGTGAAGGTTGTAATGGAGCaggag  406
            |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct  200  GAGACTGTGGAGGTTGTAGCGGTGGAGAAGGAAGCTGTGGAGGTTGTAATGGATCAGGAG  259

Query  407  gaagttc-gggagatggtgg-agcaggaggaggaggaagcggtagagtaggaagaagagg  464
            |||| || ||||||||| || || |||||| || || |  || || | |||| |  | ||
Sbjct  260  GAAG-TCGGGGAGATGGCGGAAG-AGGAGGTGGTGG-A--GG-AG-G-AGGAGGCCGCGG  311

Query  465  aaATGGCAAAGGAGATGGGAAAGGACAAGGTGACGACGGTGGAAAAGAAGATTGCAATGA  524
             ||  |  || || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  312  -AA--G--AA-GAAATGGCAAAGGACAAGGTGACGACGGTGGAAAAGAAGATTGCAATGA  365


 Score =  115 bits (62),  Expect = 5e-25
 Identities = 82/91 (90%), Gaps = 3/91 (3%)
 Strand=Plus/Plus

Query  545  ATGATAGGAACAACGGTGATGGTGTTGGTATTGGTATTGGTATAGGTATAGGAGGTGAAC  604
            ||||||||||||| ||| ||||||||||||||||||| ||||||||   ||| | |||||
Sbjct  362  ATGATAGGAACAATGGTAATGGTGTTGGTATTGGTATAGGTATAGG---AGGTGATGAAC  418

Query  605  CTAGCCCtggatccggaggtggaggaggtgg  635
            |||||||||||||||||||||| ||||||||
Sbjct  419  CTAGCCCTGGATCCGGAGGTGGTGGAGGTGG  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33014446122


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5