BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18120.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319764 jgi|Araly1|319764|fgenesh1_pm.C_scaffold_3002780 811 0.0
> Ahg319764 jgi|Araly1|319764|fgenesh1_pm.C_scaffold_3002780
Length=627
Score = 811 bits (439), Expect = 0.0
Identities = 569/629 (90%), Gaps = 20/629 (3%)
Strand=Plus/Plus
Query 16 ATGGCTGGGACAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAATTGG 75
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTGGGATAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAACTGG 60
Query 76 GTTTGGTACA-AACACACCAATAATAACCTAAGTACGAGCCACAACAATCAGATATGGCA 134
|||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTTTGGTACAGAA-ACGCCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCA 119
Query 135 GCAGCCAAGCCTCGATCTATATCCGGGTCAGATCGACGTCTGTGATATGACCACGTCATC 194
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 GCAGCCAAGCCTGGATCTATATCCGGGTCAGATCGACGTCTGTGATTTGACCACGTCATC 179
Query 195 GAGATCTCTAACGATAAGCTGTCAAGAGTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 254
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CAGATCCCTAACCATAAGCTGTCAAGACTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 239
Query 255 CGGGCGGTGTAGAACTTGCTGCAAGAGTAACGGACTCCACTGTCCCACCCACGTGAGGAG 314
|| |||||||||||||||||||||| |||| ||||||||||| || ||||| |||||
Sbjct 240 TGGACGGTGTAGAACTTGCTGCAAGAACCACGGGCTCCACTGTCCTACTCACGTTAGGAG 299
Query 315 CACGTGGATCCCCATTGCCAAACGCCGTGAGCGGCAGCAGCAGCTACAGACGCCAACCTC 374
||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 300 CACGTGGATCCCCATCGCCAAACGCCGCGAGCGGCAGCAGCAGATACAGACGCCAATCTC 359
Query 375 CAACCCAACCGGCGGTAGCGGCAGAGTTGGGAA------------GTATAGAGACATTAA 422
||||| || |||||| ||| |||||||||||| ||||||||| ||| |
Sbjct 360 CAACCGAAATGGCGGTGGCGACAGAGTTGGGAACATCCCAACACCGTATAGAGAGATTGA 419
Query 423 TCAACATGCTACTTTAGACTCATCAGGGTTAGAGATGGGAGAGACAAGATTTCCAGATGA 482
||||| |||| | ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 420 TCAACCGGCTA----A--CTCATCAGGGTTAGAGATGGGAGAGGCAACATTTCCAGATGA 473
Query 483 AGTGAGCTCGGATGCACTTTTCCGATGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 474 AGTGAGCTCGGATGCACTTTTCCGGTGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 533
Query 543 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGTCATCTCTTTAAAGGAATTCTCTA 602
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 534 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGCCATCTCTTTAAGGGAATTCTATA 593
Query 603 TAACCAAGGTCCAGAAAACAAGTCCATGC 631
|||||||||||| ||||||| ||||||||
Sbjct 594 TAACCAAGGTCCGGAAAACATGTCCATGC 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5