BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18130.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480717 jgi|Araly1|480717|fgenesh2_kg.3__3418__AT2G18130.1 1384 0.0
> Ahg480717 jgi|Araly1|480717|fgenesh2_kg.3__3418__AT2G18130.1
Length=1386
Score = 1384 bits (749), Expect = 0.0
Identities = 884/950 (93%), Gaps = 5/950 (1%)
Strand=Plus/Plus
Query 380 ATGACCCCTCCAAAAGTCGGTCCAGATGTTCCCTACACATTCGGTATTATA-GTGATCTT 438
||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 439 ATGACTCCTCCAAAAGTCGGTCCAGATGTTCCCTACACATTCGGTGTTATAGGTGATCTT 498
Query 439 GGACAAACTTATGCCTCTAACCAGACATTGTACAACTACATGTCGAATCCAAAAGGCCAA 498
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 499 GGACAAACCTATGCCTCTAACCAGACATTGTACAACTACATGTCGAACCCAAAAGGCCAA 558
Query 499 GCAGTGCTTTTTGTC-GGAGATTTGTCCTATGCTGATGACCATCCCAACCACGACCAAAG 557
|| |||||||| | | ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 559 GCGGTGCTTTTCG-CTGGAGATTTGTCTTACGCTGATGACCATCCTAACCACGACCAAAG 617
Query 558 AAAATGGGATTCATACGGCCGCTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGAGTTG 617
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 618 AAAATGGGATTCATACGGCCGATTTGTAGAACCAAGCGCCGCGTATCAGCCTTGGATTTG 677
Query 618 GGCTGCAGGGAACTACGAGATAGATTACGCCCAGAGCATAAGCGAGACTCAACCCTTTAA 677
||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 678 GGCCGCAGGGAACCACGAGATAGATTACGCCCAGAGCATAGGAGAGACTCAACCCTTCAA 737
Query 678 GCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACATCTCCACTTTG 737
||| |||| | | ||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 738 GCCGTACATGCACCGTTACCACGTTCCTCACAAAGCCTCACAGAGTACATCTCCACTTTG 797
Query 738 GTACTCAATCAAACGAGCCT-CGACTTACATCATCGTACTCTCTTCTTACTCAGCTTATG 796
|||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||
Sbjct 798 GTACTCAATCAAACGAGCCTCCG-CATACATCATCGTACTCTCCTCTTACTCAGCTTATG 856
Query 797 ACAAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAG 856
|||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 857 ACAAGTACACGCCACAGAACTCTTGGCTCCAGGATGAGCTCAAGAAAGTTAACCGATCAG 916
Query 857 AGACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACT 916
||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 917 AGACTCCGTGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAACAATTATCATT 976
Query 917 ATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCG 976
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 ATATGGAGGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCG 1036
Query 977 ATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATCAAAGCGCATATCCAACATTC 1036
|||| |||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 1037 ATATTGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATCAGAGCGCGTCTCCAACATTA 1096
Query 1037 ATTACAATATCACTGATGGAATGAGTACTCCGGTGAAAGATCAAAATGCTCCGATTTACA 1096
| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1097 AGTACAATATCACTGATGGATTGAGTACTCCGGTGAAAGATCAAAATGCTCCGGTTTACA 1156
Query 1097 TTACCATTGGAGATGGAGGCAACATAGAAGGAATCGCTAACAGTTTCACCGATCCCCAAC 1156
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TCACCATTGGAGATGGAGGAAACATAGAAGGAATCGCTAACAGTTTCACCGATCCCCAAC 1216
Query 1157 CAAGTTACTCGGCGTTTAGGGAGGCAAGTTTTGGACACGCCCTTTTGGAAATAAAGAACA 1216
||||||||||||||||||||||||| ||||| |||||||| ||| | || ||||||||||
Sbjct 1217 CAAGTTACTCGGCGTTTAGGGAGGCGAGTTTCGGACACGCTCTTCTAGAGATAAAGAACA 1276
Query 1217 GGACTCATGCACATTACACTTGGCATAGGAATAAAGAAGACGAGGCTGTTATTGCAGATT 1276
||||||||||||||||||||||||||||||| ||||| || ||| |||||||||| |||
Sbjct 1277 GGACTCATGCACATTACACTTGGCATAGGAACAAAGACGATGAGCCTGTTATTGCCGATG 1336
Query 1277 CTATTTGGTTGAAGAAAAGATACTACTTGCCGGAGGAGGAGACTGCTTAG 1326
|||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct 1337 CTATTTGGTTGAAGAACAGATATTACTTGCCGGAGGAGGAAACAGCTTAG 1386
Score = 350 bits (189), Expect = 2e-95
Identities = 315/375 (84%), Gaps = 12/375 (3%)
Strand=Plus/Plus
Query 1 ATGGAGTTGAGTCACTTAGCACTTGTTTGCGCTGCGA-TTGCATT-CTCAAGCATCTTTG 58
|||||||||| || |||||||| |||||| || | | | || | ||||||||||
Sbjct 1 ATGGAGTTGAATCGTTTAGCACTCGTTTGCTATG-TAGTGGTGTTGAT-AAGCATCTTT- 57
Query 59 TC-GTTAGTCA-AGCTGGAATCACCAGT-ACTCATGCCCGAGTATCAGAACCTTCTGAAG 115
|| || | ||| || ||| |||| | ||| ||| ||||||| |||||||| ||||
Sbjct 58 TCGGTGACTCACGGC-GGAGTCACTTCTAACT-ATGTTAGAGTATCGGAACCTTCCGAAG 115
Query 116 AAATGTCACTAGAAACATTTCCTCCTCCTGCCGGTTATAACGCTCCTGAACAAGTTCACA 175
||||| |||| ||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 116 AAATGCCACTGGAAACATTTCCTCCTCCTGCCGGCTACAACGCTCCGGAACAAGTTCACA 175
Query 176 TAACACAAGGAGAT-AATGCGGGTCGAGCTATGATCATTTCGTGGGTAATGCCATTAAAT 234
|||| ||||||||| | | | ||||||| ||||||||| |||||||||| ||||||||
Sbjct 176 TAACGCAAGGAGATCACT-CTGGTCGAGGTATGATCATCTCGTGGGTAACACCATTAAAC 234
Query 235 GAGGATGGTTCTAACGTCGTTACATATTGGATCGCCAGTAGTGATGGTAGTGATAATAAA 294
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 235 GAGGATGGTTCTAACGTCGTTACATATTGGATCGCTGGTGGTGATGGTACTGATAATAAG 294
Query 295 AATGCTATAGCGACAACTTCGTCCTATAGATACTTCAATTACACATCTGGTTATCTTCAC 354
| ||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||
Sbjct 295 AGTGCTATAGCGACAACTTCGTCCTATCGATACTTCGATTACACCTCTAATTATCTTCAC 354
Query 355 CACGCCACCATaaaa 369
|| ||||||||||||
Sbjct 355 CATGCCACCATAAAA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5