BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18150.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480719 jgi|Araly1|480719|fgenesh2_kg.3__3420__AT2G18150.1 1941 0.0
> Ahg480719 jgi|Araly1|480719|fgenesh2_kg.3__3420__AT2G18150.1
Length=1254
Score = 1941 bits (1051), Expect = 0.0
Identities = 1190/1256 (95%), Gaps = 13/1256 (1%)
Strand=Plus/Plus
Query 1 CATATCTCCTACCATCACAAAGTCATCTCC-TTCTTCTTTCTTGATCTAGCTAGCGGAAA 59
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1 CATATCTCTTACCATCACAAAGTCATCTCCATTCTTCTTTCTTGATCTAGCTAGCGG-AA 59
Query 60 ATTTGACAATGGCAAGAATCGGAAGCTTTCTCATTATTCTTTACCTCATTTACGCTCTTA 119
| ||| ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 60 A-TTGGCAATGGCAAGAATAGGAAGCTTTCTCATTATTCTTTATCTCACTTACGCTCTTA 118
Query 120 CTCTCTGCATCTGCGACGACGACGAGAGTA---ACTATGGCGGCGACAAAGGGAACCTCT 176
|||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 119 CTCTCTGCATCTGCGATGACGACGAGAGTATGTACTATGGCGGCAACAAAGGGAACCTCT 178
Query 177 TCCCAGGTTTCTACAGAAGCTCGTGCCCTAGAGCCGAGGAGATCGTGAGGTCAGTTGTAG 236
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 179 TCCCAGGTTTCTACAGAAGCTCGTGTCCTAGAGCCGAGGAGATTGTGAGGTCAGTTGTAG 238
Query 237 CCAAAGCTGTTGCAAGGGAGACTCGTATGGCTGCTTCTCTCATGAGGCTCCATTTCCACG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CCAAAGCTGTTGCAAGGGAGACTCGTATGGCTGCTTCTCTCATGAGGCTCCATTTCCACG 298
Query 297 ATTGTTTCGTTCAGGGTTGTGATGGATCGTTGCTTCTAGACACCAGTGGGAGTATAGTTA 356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACTGTTTCGTTCAGGGTTGTGATGGATCGTTGCTTCTAGACACCAGTGGGAGTATAGTTA 358
Query 357 CTGAGAAGAACTCTAACCCGAACAGCAGATCGGCTCGCGGGTTTGAAGTTGTTGACGAGA 416
||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct 359 CTGAGAAGAACTCTAACCCTAACAGTAGGTCGGCTCGTGGGTTTGAAGTTGTTGACGAGA 418
Query 417 TCAAGGCAGCATTAGAGAACGAATGCCCTAACACTGTTTCTTGTGCTGATGCCTTAACTC 476
||||||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 419 TCAAGGCTGCATTGGAGAATGAATGCCCTAACACTGTTTCTTGTGCTGACGCATTAACTC 478
Query 477 TAGCCGCTAGAGACTCCTCTGTTCTTACTGGTGGACCAAGCTGGATGGTTCCTTTGGGAA 536
|||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 479 TAGCTGCTAGAGACTCTTCTATTCTTACTGGTGGACCAAGCTGGATGGTTCCATTGGGAA 538
Query 537 GAAGAGATTCGACAAGTGCAAGCTTGAGTGGATCAAACAACAACATTCCTGCACCCAACA 596
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 GAAGAGATTCGAGAAGTGCAAGCTTGAGCGGATCAAACAACAACATTCCTGCACCCAACA 598
Query 597 ACACTTTCAACACAATTGTCACGAGATTTAACAACCAAGGTCTCGATCTCACCGACGTTG 656
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 599 ACACTTTCAACACAATTGTCTCGAGATTTAACAATCAAGGTCTCGATCTCACCGACGTTG 658
Query 657 TTGCTCTCTCCGGGAGCCACACCATTGGATTTTCAAGATGCACTAGTTTCAGACAGAGAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGCTCTCTCCGGGAGCCACACCATTGGATTTTCAAGATGCACTAGTTTCAGACAGAGAC 718
Query 717 TGTACAACCAATCCGGAAACGGAAGTCCCGACAGAACCTTAGAGCAATCCTACGCTGCTA 776
| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 719 TTTACAACCAATCCGGAAATGGAAGTCCGGACTCAACCTTAGAGCAATCCTACGCTGCTA 778
Query 777 ACTTGCGCCAAAGGTGCCCTAGATCGGGTGGGGACCAGAACCTGTCAGAGCTTGACATCA 836
|||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 779 ACTTACGCCAGAGGTGCCCTAGATCGGGTGGGGATCAGAACCTGTCGGAGCTTGACATCA 838
Query 837 ACAGCGCTGGAAGATTTGATAACAGCTACTTCAAGAACTTGATCGAGAACATGGGACTGT 896
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 839 ACAGCGCCGGAAGATTTGATAACAGCTATTTCAAGAACTTGATCGAGAAGATGGGACTGT 898
Query 897 TGAATTCCGACGAGGTCTTGTTCTCTAGCAATGAGCAATCAAGAGAGCTCGTCAAGAAGT 956
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 899 TGAATTCCGACGAGGTCTTGTTCTCTAGCAATGAGCAATCGAGAGAGCTGGTGAAGAAGT 958
Query 957 ATGCAGAGGATCAAGAAGAGTTCTTCGAGCAGTTCGCGGAGTCGATGATCAAGATGGGGA 1016
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 ATGCAGAGGATCAAGAAGAGTTCTTCGAGCAGTTTGCGGAGTCGATGATCAAGATGGGGA 1018
Query 1017 ATATCTCTCCCTTGACAGGTTCGAGTGGTGAGATCAGAAAGAATTGCAGGAAAATTAATA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATATCTCTCCCTTGACAGGTTCGAGTGGTGAGATCAGAAAGAATTGCAGGAAAATTAATA 1078
Query 1077 ACTCTTGATTTCCTAGTATCGGATGGGAGAAATAGAAATGTGACATGTTTTGGAGGAAGG 1136
|||||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||
Sbjct 1079 ACTCTTGATTCCCTAGTATTGGATGGGCCAAATAGAAATGTGACATGTTTTTGAGGAAGG 1138
Query 1137 AATTTATGTTTATGttttttttt-------ATATTGTATGAGTCTGTATTTCTTTGTGTC 1189
||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 1139 AATTTTTGTTTGTGTTTTTTTTTTTTTTTGATATTGTATGAGTCTGTAATTCCTTGTGTC 1198
Query 1190 AAGAATTTGAATTTTGTAAGTTTAAATGATTGAAACTATCTATAATTAAAATGTTA 1245
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 AAGAATTTGAATTTTGTAAGTTTAAATGATTGAAACTCTCTATAATTAAAATGTTA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5