BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18170.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785 1768 0.0
Ahg353194 jgi|Araly1|353194|fgenesh1_pg.C_scaffold_7000367 1092 0.0
Ahg942987 jgi|Araly1|942987|scaffold_603531.1 132 1e-29
> Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785
Length=1107
Score = 1768 bits (957), Expect = 0.0
Identities = 1058/1108 (95%), Gaps = 2/1108 (0%)
Strand=Plus/Plus
Query 215 ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAAGCAACAAGGGAAACATTACTACTCC 274
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAAACAACAAGGGAAACATTACTACTCA 60
Query 275 ATGTGGCAAACATTGTTCGAAATCGATACAAAGTATGTTCCGATTAAACCCATTGGAAGA 334
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ATGTGGCAAACATTGTTCGAAATCGATACTAAGTATGTTCCGATTAAACCCATTGGAAGA 120
Query 335 GGAGCTTATGGTGTGGTTTGTTCTTCTATCAATCGTGAGACTAATGAGAGAGTTGCTATT 394
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GGAGCTTATGGTGTGGTTTGTTCTTCAATCAATCGTGAGACTAATGAGAGAGTTGCTATT 180
Query 395 AAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAACTT 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAACTT 240
Query 455 AAACTTCTTAGGCATGTGAGGCATGAGAATGTGATCGCGCTTAAAGATGTTATGTTGCCT 514
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGCTTCTTAGGCATGTGAGGCACGAGAATGTGATCGCGCTTAAAGATGTTATGTTGCCT 300
Query 515 GCTAATAGATCCAGTTTCAAGGATGTTTATTTGGTTTATGAGCTAATGGATACTGATCTT 574
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GCTAATAGATCCAGTTTTAAAGATGTTTATTTGGTTTATGAGCTCATGGATACTGATCTT 360
Query 575 CATCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAGTACTTCTTGTTT 634
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CATCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAATACTTCTTGTTT 420
Query 635 CAGTTGCTTAGAGGGTTGAAGTATCTTCATTCTGCAAACATACTTCACCGGGATTTGAAG 694
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 CAGTTGCTTAGAGGATTGAAGTATCTTCATTCTGCAAACATCCTTCACCGGGATTTGAAG 480
Query 695 CCCGGGAACCTCTTAGTTAATGCGAACTGCGATCTCAAGATTTGTGATTTCGGGTTGGCG 754
||||||||||||||||| || ||||| || |||||||||||||||||||| |||||||||
Sbjct 481 CCCGGGAACCTCTTAGTCAACGCGAATTGTGATCTCAAGATTTGTGATTTTGGGTTGGCG 540
Query 755 AGAACGAGCCAAGGTAATGAACAGTTCATGACTGAGTATGTGGTTACACGTTGGTACAGA 814
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 541 AGAACGAGCCAAGGCAATGAACAGTTCATGACGGAGTATGTTGTTACACGTTGGTACCGA 600
Query 815 GCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTATGGTCGGTT 874
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 601 GCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTTTGGTCAGTT 660
Query 875 GGTTGCATATTCGCGGAGATTCTTGGTAGGAAACCGATTTTTCCAGGAACAGAATGC-TT 933
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 661 GGATGCATATTCGCGGAGATTCTTGGCAGGAAACCGATTTTCCCAGGAACAGAATGCCTT 720
Query 934 GAATCAGCTTAAGCTAATCATCAACGTTGTTGGTAGCCAACAAGAATCTGATATTCGGTT 993
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 721 -AATCAGCTTAAGCTAATCATCAATGTTGTTGGTAGCCAACAAGAATCGGATATTCGGTT 779
Query 994 CATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCGTACTCAAGAGGAACTCA 1053
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 CATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCTTACTCAAGAGGAACTCA 839
Query 1054 TCTCTCCAATCTTTATCCACAAGCCAATCCTCTAGCTATAGATTTGTTACAGAGGATGCT 1113
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTCTCCAATCTCTACCCACAAGCCAATCCTCTAGCTATAGATTTGTTACAGAGGATGCT 899
Query 1114 TGTGTTTGATCCAACCAAGAGAATCTCTGTAACCGATGCGCTCTTACACCCGTATATGGC 1173
||||| |||||||| || |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 900 CGTGTTCGATCCAACGAAAAGAATCTCGGTAACCGATGCACTCTTACACCCGTACATGGC 959
Query 1174 GGGGTTGTTTGATCCTGGATCCAATCCGCCTGCACATGTCCCAATCTCTCTGGACATAGA 1233
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 960 GGGGCTGTTTGATCCTGGATCCAATCCACCTGCACATGTCCCAATCTCTTTGGACATAGA 1019
Query 1234 TGAAAACATGGAGGAACCAGTGATAAGAGAGATGATGTGGAATGAGATGCTTTATTACCA 1293
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 CGAAAACATGGAGGAACCAATGATCAGAGAGATGATGTGGAATGAGATGCTTTATTACCA 1079
Query 1294 CCCTGAAGCTGAAATCTCAAATGCCTAA 1321
|||||||||||| ||| |||| |||||
Sbjct 1080 CCCTGAAGCTGATATCGCAAACACCTAA 1107
> Ahg353194 jgi|Araly1|353194|fgenesh1_pg.C_scaffold_7000367
Length=1092
Score = 1092 bits (591), Expect = 0.0
Identities = 939/1105 (85%), Gaps = 32/1105 (3%)
Strand=Plus/Plus
Query 215 ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAAG-CAACAAGGGAAACATTACTACTC 273
||||||||| ||||||| || |||||||||||| || ||| ||||||||||||||||| |
Sbjct 1 ATGGCGATGCTAGTTGATCCTCCAAATGGGATT-AGACAAGAAGGGAAACATTACTACAC 59
Query 274 CATGTGGCAAACATTGTTCGAAATCGATACAAAGTATGTTCCGATTAAACCCATTGGAAG 333
|||||||||||||| ||||||||||| || ||||||||||||||||| || ||||||||
Sbjct 60 GATGTGGCAAACATTATTCGAAATCGACACTAAGTATGTTCCGATTAAGCCGATTGGAAG 119
Query 334 AGGAGCTTATGGTGTGGTTTGTTCTTCTATCAATC-GTGAGACTAATGAGAGAGTTGCTA 392
||||||||||||||| ||||||||||| ||||| | | ||||| ||||||||||||||||
Sbjct 120 AGGAGCTTATGGTGTTGTTTGTTCTTCAATCAA-CAGAGAGACCAATGAGAGAGTTGCTA 178
Query 393 TTAAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAAC 452
|||| ||||| |||||||||||||||||||| | |||||||||||||||||||| || |
Sbjct 179 TTAAGAAGATCCACAATGTGTTTGAGAATCGCATCGATGCTTTGAGAACGTTGAGAGAGC 238
Query 453 TTAAACTTCTT-AGGCATGTGAGGCATGAGAATGTGATCGCGCTTAAAGATGTTATGTTG 511
|||| ||| || ||||||||||| || || || || ||||| ||||| ||||||||||||
Sbjct 239 TTAAGCTT-TTAAGGCATGTGAGACACGAAAACGTTATCGCCCTTAAGGATGTTATGTTG 297
Query 512 CCTGCTAATAGATCCAGTTTCAAGGATGTTTATTTGGTTTATGAGCTAATGGATACTGAT 571
||| || |||| | ||||||||| |||||||||||||| |||||||| |||||| |||||
Sbjct 298 CCTACTCATAGGTACAGTTTCAAAGATGTTTATTTGGTCTATGAGCTTATGGATTCTGAT 357
Query 572 CTT-CATCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAGTACTTCTT 630
|| ||||||| || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 358 -TTGAATCAGATCATCAAATCTTCTCAGTCTCTTTCCGATGATCACTGCAAGTACTTCTT 416
Query 631 GTTTCAGTTGCTTAGAGGGTTGAAGTATCTTCATTCTGCAAACATACTTCACCGGGATTT 690
|||||||||||| ||||| |||||||||||||| || |||||||| |||||||| |||||
Sbjct 417 GTTTCAGTTGCTAAGAGGATTGAAGTATCTTCACTCAGCAAACATCCTTCACCGCGATTT 476
Query 691 GAAGCCCGGGAA-CCTCTTAGTTAATGCGAACTGCGATCTCAAGATTTGTGATTTCGGG- 748
||||||||||| | || |||| ||||| || || ||||| ||||||||||||||||||
Sbjct 477 AAAGCCCGGGAATCTTC-TAGTGAATGCTAATTGTGATCTAAAGATTTGTGATTTCGGGC 535
Query 749 TTGGCGAGAACGAGCCA-AGGTAATGAACAGTTCATGACTGAGTATGTGGTTACACGTTG 807
|| |||||||| || | ||| ||||||||||| ||||| ||||||||||| ||||||||
Sbjct 536 TT-GCGAGAACAAG-TAGAGGCAATGAACAGTTTATGACAGAGTATGTGGTCACACGTTG 593
Query 808 GTACAGAGCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTATG 867
|||| ||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||
Sbjct 594 GTACCGAGCACCTGAGCTTCTTCTCTGTTGTGACAACTACGGAACCTCCATCGATGTTTG 653
Query 868 GTCGGTTGGTTGCATATTCGCGGAGATTCTTGGTAGGAAACCGATTTTTCCAGGAACAGA 927
|||||| || |||||||| || ||||||||||| || ||||||||||| || ||||||||
Sbjct 654 GTCGGTAGGATGCATATTTGCAGAGATTCTTGGAAGAAAACCGATTTTCCCGGGAACAGA 713
Query 928 ATGCTTGAATCAGCTTAAGCTAATCATCAACGTTGTTGGTAGCCAACAAGAATCTGATAT 987
|||| | || || || ||||||||||| || |||||||||||||||||||| | ||| |
Sbjct 714 ATGCCTCAACCAACTGAAGCTAATCATAAATGTTGTTGGTAGCCAACAAGACTGGGATCT 773
Query 988 TCGGTTCATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCGTACTC-AAGAG 1046
| ||||||||| |||| ||||||| | || ||||||||||||||||| | ||| ||| |
Sbjct 774 CCAGTTCATAGATAACCAGAAAGCTAGGAGATTTATAAAGTCTCTTCCTTTCTCAAAG-G 832
Query 1047 GAACTCATC-TCTC-CAATCTTTATCCACAAGCCAATCCTCTAGCTATAGATTTGTTACA 1104
| ||||| | | || | | |||| || || || |||||||| || ||||||||||||||
Sbjct 833 GCACTCA-CTTTTCTC-AGATTTACCCGCATGCGAATCCTCTGGCGATAGATTTGTTACA 890
Query 1105 GAGGATGCTTGTGTTTGATCCAACCAAGAGAATCTCTGTAACCGATGCGCTCTTACA-CC 1163
|||||||||||||||||||||||||||||| || || || | ||||||||| ||||| ||
Sbjct 891 GAGGATGCTTGTGTTTGATCCAACCAAGAGGATATCGGTCAGCGATGCGCTTTTACATCC 950
Query 1164 CGTATATGGCGGGGTTGTTTGATCCTGGA-TCCAATCCGCCTGCACATGTCCCAATCTCT 1222
| || |||||||| ||||| || || ||| | |||||| | | | |||| || || |
Sbjct 951 C-TACATGGCGGGTTTGTTGGAACC-GGAATGTAATCCGTCAGAAAATGTTCCGGTCAGT 1008
Query 1223 CTGGACATAGATGAAAACATGGA-GGA-ACCAGTGATAAGAGAGATGATGTGG-AATGAG 1279
|||| |||||||| || ||||| ||| || | |||| || |||||||||||| || |||
Sbjct 1009 TTGGAGATAGATGAGAATATGGAAGGAGAC-A-TGATCAGGGAGATGATGTGGGAA-GAG 1065
Query 1280 ATGCTTTATTACCA-CCCTGAAGCT 1303
||||||||||||| ||| ||||||
Sbjct 1066 ATGCTTTATTACCTTCCC-GAAGCT 1089
> Ahg942987 jgi|Araly1|942987|scaffold_603531.1
Length=1173
Score = 132 bits (71), Expect = 1e-29
Identities = 324/439 (74%), Gaps = 45/439 (10%)
Strand=Plus/Plus
Query 536 GATGTTTATTTGGTTTATGAGCTAATGGATACTGATCTTCATCAGATTATTAAATCCT-C 594
||||||||| | |||| |||| ||||||||||||||||||||||||||||| ||| |
Sbjct 377 GATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGATCAGAC 436
Query 595 TCAGTCTCTTTC--TGATGATCACTG-CAAGTACTTCTTGTTTCAG-TTGCTTA-GAGGG 649
|| | |||| ||||||||| || || ||||||||||| |||| || || | ||||
Sbjct 437 -CAA-C-CTTTGAATGATGATCATTGTCA-GTACTTCTTGTATCAGATT-CT-ACGAGGA 490
Query 650 TTGAAGTATCTTCATTCTGCAAACATACTT-CACCGGGAT-TTGAAGCCCGGG-AACCT- 705
| || ||| ||||||| ||||| | ||| || || || || ||||| | | || |
Sbjct 491 ATAAAATATATTCATTCAGCAAATGT-CTTACATCGTGACCTT-AAGCC-GAGTAATTTG 547
Query 706 CTTAGTTAATGCGAACTGCGATCTCAAGATTT-GTGA-TTTCGGGTTGGCGAGAACGAGC 763
||| | ||| |||| || ||||| |||||| | || ||| || ||||| || |||| |
Sbjct 548 CTTC-TGAATTCGAATTGTGATCTTAAGATTACG-GACTTT-GGTTTGGCAAGGACGA-C 603
Query 764 CAAGGTAATGAA-CAG--TTCATGACTGAGTATGTGGTTACACGTTGGTACAGAGCACCT 820
| | |||| ||| || ||||| |||||||| || || || |||||| |||||||
Sbjct 604 -A---TC-TGAAACAGAGTTTATGACAGAGTATGTTGTAACTCGATGGTACCGAGCACCA 658
Query 821 GAGCTTCTTCTTTGTTGTG-ATAACTATGGAACCTCCA-TTGATGTATGGTCGGTTGGTT 878
||||| |||||| | || | | ||| | | | || ||||||| ||||| |||||||
Sbjct 659 GAGCTGCTTCTTAATAGTTCAGAG-TATACATC-TGCAATTGATGTTTGGTCTGTTGGTT 716
Query 879 GCATATTCGCGGAGATTCTTGGTA-GGAAACCGATTTTTCCAGG-AACAGA--ATGCTTG 934
||||||| || |||||| | | | || ||||| |||| || || || ||| ||| ||
Sbjct 717 GCATATTTGCTGAGATTAT-GACAAGGGAACCGCTTTTCCCGGGGAA-AGACTATG-TTC 773
Query 935 AATCAGCTTAAGCTAATCA 953
| ||||||||| || ||||
Sbjct 774 A-TCAGCTTAAACTTATCA 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5