BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18190.1 Length=1485 Score E Sequences producing significant alignments: (Bits) Value Ahg931705 jgi|Araly1|931705|scaffold_304162.1 440 1e-122 Ahg931706 jgi|Araly1|931706|scaffold_304163.1 396 3e-109 Ahg343446 jgi|Araly1|343446|fgenesh1_pg.C_scaffold_3003209 311 1e-83 > Ahg931705 jgi|Araly1|931705|scaffold_304162.1 Length=401 Score = 440 bits (238), Expect = 1e-122 Identities = 298/327 (91%), Gaps = 4/327 (1%) Strand=Plus/Plus Query 1091 CTGCTCTGTTACGTCCTGGAAGAATGGATATGCATATCAACATGTCTTACTGTACAGGTT 1150 |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1 CTGCTCTGCTACGTCCTGGAAGAATGGATGTGCATATCAACATGTCTTATTGTACAGGTT 60 Query 1151 TAGGGTTTAGGACATTGGTCTCTAATTACCTCGGTTTAGGTGGCTTAAACCATCCTCTTT 1210 ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| | Sbjct 61 TAGGGTTTAGGACATTGGTCTCTAACTATCTCGGTTTAGATGGCTTAAACCATCCTCTAT 120 Query 1211 GCGAGGAAATCGAGGCGCTGATCGATTCCACTGAGGTGACTCCGGCTGAGTTAGCTGAAG 1270 | || ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 121 GTGAAGAAATTGAGGCGCTGATTGATTCCACAGAGGTGACTCCGGCTGAGTTAGCTGAAG 180 Query 1271 AGTTGATGCAAGAAGATGATACTGATGTTGTCCTTCGTGGAGTAGTTAGCTTTGTTGAGA 1330 || | |||||||| ||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 181 AGCTAATGCAAGACGATGACACGGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTTGAGA 240 Query 1331 ATAGAAAGGTCGAGATAAGCAAAACCAAGGAGCTGGAAGG-TTCTACTTGTAGAAA-ACT 1388 | |||||| |||||| ||||||||||||||||||||| || ||||| ||||| || ||| Sbjct 241 ACAGAAAGTTCGAGACAAGCAAAACCAAGGAGCTGGA-GGATTCTAATTGTA-AACTACT 298 Query 1389 TGATGGTGACGATAAACACAATGTTTC 1415 |||||||||||| |||||||||| ||| Sbjct 299 TGATGGTGACGAAAAACACAATGGTTC 325 > Ahg931706 jgi|Araly1|931706|scaffold_304163.1 Length=337 Score = 396 bits (214), Expect = 3e-109 Identities = 268/293 (91%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 1 ATGTTTCCTTCAATATCCAATATCTCTTTATCACCATCGTCGCTGTT-TACAGCGTACGC 59 ||||||||||| ||||||| ||||||| ||||||||||||||||| | |||||||||| Sbjct 24 ATGTTTCCTTC---ATCCAATTTCTCTTTCTCACCATCGTCGCTGTTCT-CAGCGTACGC 79 Query 60 GTCCTTAACCGGATTCTTGATGCTCTTTAGATCACTGTTCAATGATGA-AGTACCGGAGA 118 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||| Sbjct 80 ATCCTTAACCGGATTCTTGATGCTCTTTAGATCGTTGTTCAATGAT-ATCGTACCAGAGA 138 Query 119 GGCTCCGATCATACATCACCGACTTACTCAACCGGTTTTTCACTCCGAAATCAAAGAATT 178 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 139 GGCTCCGATCATACATCACCGACTTACTCAACCGGTTCTTGACTCCGAAATCAAAGAATT 198 Query 179 TGACTATGGTTATCGACGAGATCATCGGATTTAAGAGGAACCAAGTGTTCGACGCGGCAG 238 |||||||||||||||||||||| ||||||| ||||||||||||||| || |||||||| | Sbjct 199 TGACTATGGTTATCGACGAGATGATCGGATATAAGAGGAACCAAGTTTTTGACGCGGCGG 258 Query 239 AGGTGTACCTCCGGAACAAAATCGGACCCGAGACAGCCCGTTTACGAGTAGGT 291 || ||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 259 AGATGTACCTCCGGAACAAAATCGGACCAGAGACAGCACGTTTTCGAGTAGGT 311 > Ahg343446 jgi|Araly1|343446|fgenesh1_pg.C_scaffold_3003209 Length=642 Score = 311 bits (168), Expect = 1e-83 Identities = 240/273 (88%), Gaps = 12/273 (4%) Strand=Plus/Plus Query 1147 GGTTTAGGGTTTAGGACATTGGTCTCTAATTACCTCGGTTTAGGTGGCTTAAACCATCCT 1206 |||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||||| Sbjct 325 GGTTTAGGATTTAGGACATTGGTCTCTAATTACCTTGGTTTAGATGGCATAAACCATCCT 384 Query 1207 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCCACTGAGGTGACTCCGGCTGAGTTAGCT 1266 |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| Sbjct 385 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCG 444 Query 1267 GAAGAGTTGATGCAAGAAGATGATACTGATGTTGTCCTTCGTGGAGTAGTTAGCTTTGTT 1326 |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 445 GAAGAGCTGATGCAAGACGATGATACTGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTT 504 Query 1327 GAGAATAGAAAGGTCGAGATAAGCAAAACCAAGGAGCTGGAAGGTT-CTACTTGTAGAA- 1384 ||||| || ||||| |||| |||||| || |||||| | | |||| ||| ||||| || Sbjct 505 GAGAAGAGGAAGGTTGAGAGAAGCAAGACTAAGGAG--G-A-GGTTTCTATTTGTA-AAG 559 Query 1385 -AACTTGATGGTGACG-ATAAACACAATG-TTT 1414 || |||||| ||||| | ||||| |||| ||| Sbjct 560 CAA-TTGATGATGACGGA-AAACAGAATGGTTT 590 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55573667455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5