BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18190.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931705 jgi|Araly1|931705|scaffold_304162.1 440 1e-122
Ahg931706 jgi|Araly1|931706|scaffold_304163.1 396 3e-109
Ahg343446 jgi|Araly1|343446|fgenesh1_pg.C_scaffold_3003209 311 1e-83
> Ahg931705 jgi|Araly1|931705|scaffold_304162.1
Length=401
Score = 440 bits (238), Expect = 1e-122
Identities = 298/327 (91%), Gaps = 4/327 (1%)
Strand=Plus/Plus
Query 1091 CTGCTCTGTTACGTCCTGGAAGAATGGATATGCATATCAACATGTCTTACTGTACAGGTT 1150
|||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1 CTGCTCTGCTACGTCCTGGAAGAATGGATGTGCATATCAACATGTCTTATTGTACAGGTT 60
Query 1151 TAGGGTTTAGGACATTGGTCTCTAATTACCTCGGTTTAGGTGGCTTAAACCATCCTCTTT 1210
||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |
Sbjct 61 TAGGGTTTAGGACATTGGTCTCTAACTATCTCGGTTTAGATGGCTTAAACCATCCTCTAT 120
Query 1211 GCGAGGAAATCGAGGCGCTGATCGATTCCACTGAGGTGACTCCGGCTGAGTTAGCTGAAG 1270
| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 121 GTGAAGAAATTGAGGCGCTGATTGATTCCACAGAGGTGACTCCGGCTGAGTTAGCTGAAG 180
Query 1271 AGTTGATGCAAGAAGATGATACTGATGTTGTCCTTCGTGGAGTAGTTAGCTTTGTTGAGA 1330
|| | |||||||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 181 AGCTAATGCAAGACGATGACACGGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTTGAGA 240
Query 1331 ATAGAAAGGTCGAGATAAGCAAAACCAAGGAGCTGGAAGG-TTCTACTTGTAGAAA-ACT 1388
| |||||| |||||| ||||||||||||||||||||| || ||||| ||||| || |||
Sbjct 241 ACAGAAAGTTCGAGACAAGCAAAACCAAGGAGCTGGA-GGATTCTAATTGTA-AACTACT 298
Query 1389 TGATGGTGACGATAAACACAATGTTTC 1415
|||||||||||| |||||||||| |||
Sbjct 299 TGATGGTGACGAAAAACACAATGGTTC 325
> Ahg931706 jgi|Araly1|931706|scaffold_304163.1
Length=337
Score = 396 bits (214), Expect = 3e-109
Identities = 268/293 (91%), Gaps = 7/293 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCCTTCAATATCCAATATCTCTTTATCACCATCGTCGCTGTT-TACAGCGTACGC 59
||||||||||| ||||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct 24 ATGTTTCCTTC---ATCCAATTTCTCTTTCTCACCATCGTCGCTGTTCT-CAGCGTACGC 79
Query 60 GTCCTTAACCGGATTCTTGATGCTCTTTAGATCACTGTTCAATGATGA-AGTACCGGAGA 118
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||
Sbjct 80 ATCCTTAACCGGATTCTTGATGCTCTTTAGATCGTTGTTCAATGAT-ATCGTACCAGAGA 138
Query 119 GGCTCCGATCATACATCACCGACTTACTCAACCGGTTTTTCACTCCGAAATCAAAGAATT 178
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 139 GGCTCCGATCATACATCACCGACTTACTCAACCGGTTCTTGACTCCGAAATCAAAGAATT 198
Query 179 TGACTATGGTTATCGACGAGATCATCGGATTTAAGAGGAACCAAGTGTTCGACGCGGCAG 238
|||||||||||||||||||||| ||||||| ||||||||||||||| || |||||||| |
Sbjct 199 TGACTATGGTTATCGACGAGATGATCGGATATAAGAGGAACCAAGTTTTTGACGCGGCGG 258
Query 239 AGGTGTACCTCCGGAACAAAATCGGACCCGAGACAGCCCGTTTACGAGTAGGT 291
|| ||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 259 AGATGTACCTCCGGAACAAAATCGGACCAGAGACAGCACGTTTTCGAGTAGGT 311
> Ahg343446 jgi|Araly1|343446|fgenesh1_pg.C_scaffold_3003209
Length=642
Score = 311 bits (168), Expect = 1e-83
Identities = 240/273 (88%), Gaps = 12/273 (4%)
Strand=Plus/Plus
Query 1147 GGTTTAGGGTTTAGGACATTGGTCTCTAATTACCTCGGTTTAGGTGGCTTAAACCATCCT 1206
|||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 325 GGTTTAGGATTTAGGACATTGGTCTCTAATTACCTTGGTTTAGATGGCATAAACCATCCT 384
Query 1207 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCCACTGAGGTGACTCCGGCTGAGTTAGCT 1266
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 385 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCG 444
Query 1267 GAAGAGTTGATGCAAGAAGATGATACTGATGTTGTCCTTCGTGGAGTAGTTAGCTTTGTT 1326
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 445 GAAGAGCTGATGCAAGACGATGATACTGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTT 504
Query 1327 GAGAATAGAAAGGTCGAGATAAGCAAAACCAAGGAGCTGGAAGGTT-CTACTTGTAGAA- 1384
||||| || ||||| |||| |||||| || |||||| | | |||| ||| ||||| ||
Sbjct 505 GAGAAGAGGAAGGTTGAGAGAAGCAAGACTAAGGAG--G-A-GGTTTCTATTTGTA-AAG 559
Query 1385 -AACTTGATGGTGACG-ATAAACACAATG-TTT 1414
|| |||||| ||||| | ||||| |||| |||
Sbjct 560 CAA-TTGATGATGACGGA-AAACAGAATGGTTT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5