BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18193.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343446 jgi|Araly1|343446|fgenesh1_pg.C_scaffold_3003209 435 7e-121
Ahg931705 jgi|Araly1|931705|scaffold_304162.1 387 2e-106
Ahg931706 jgi|Araly1|931706|scaffold_304163.1 278 1e-73
> Ahg343446 jgi|Araly1|343446|fgenesh1_pg.C_scaffold_3003209
Length=642
Score = 435 bits (235), Expect = 7e-121
Identities = 255/265 (96%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 1228 GGTTTAGGATTTAGGACATTGGTCTCTAACTACCTTGGTTTAGATGGCTTAAACCATCCT 1287
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 325 GGTTTAGGATTTAGGACATTGGTCTCTAATTACCTTGGTTTAGATGGCATAAACCATCCT 384
Query 1288 CTTTGCGAGGAAATCGAGGCGCTGGTCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCT 1347
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 385 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCG 444
Query 1348 GAAGAGCTGATGCAAGACGATGATACTGACGTTGTTCTTCGTGGAGTAATAAGCTTTGTT 1407
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 445 GAAGAGCTGATGCAAGACGATGATACTGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTT 504
Query 1408 GAGAAGAGGAAGGTTGAGAGAAGCAAGACTAAGAAGGAGGTTTCTATTTGTAAAGCAACT 1467
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 505 GAGAAGAGGAAGGTTGAGAGAAGCAAGACTAAGGAGGAGGTTTCTATTTGTAAAGCAATT 564
Query 1468 GATGATGACGAAAAACAGAATGGTT 1492
|||||||||| ||||||||||||||
Sbjct 565 GATGATGACGGAAAACAGAATGGTT 589
Score = 294 bits (159), Expect = 1e-78
Identities = 261/309 (84%), Gaps = 12/309 (4%)
Strand=Plus/Plus
Query 373 CGAGTTGGTAAGATCCCAAAACAGAAGCATTTCACAATCTCTATCGA-AAGAGGCGAAGA 431
||||| |||||| |||| | |||||||| || |||||||| ||||| || |||||||||
Sbjct 25 CGAGTCGGTAAGCTCCCTATGCAGAAGCACTTGACAATCTCGATCGAGAA-AGGCGAAGA 83
Query 432 GATCCTCGATACTTTCGAGGAGTCGGAGGTGAAATGGAGTTAT-GTTCAATCGGAGAACG 490
|||| | ||||||||||| | || ||||||| |||||||| | ||| || | |||||||
Sbjct 84 GATCTTGGATACTTTCGACAAATCTGAGGTGAGATGGAGTT-TCGTTGAAACAGAGAACG 142
Query 491 AGAAAGGAGATAAAGTGAAACGTTACTACGAGCTCACATTCGAGAAGAAGCTTAGAGACA 550
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AGAAAACAGAGAAAGTGAAACGTTACTACGAGCTCACATTCGAGAAGAAGCTTAGAGACA 202
Query 551 AAGTCTTGAACTCTTATTTAACCCACGTTGTAGCCGAATCCGAGGAGATCAAG-AGGAAT 609
||||| ||||||||||||||| ||| ||| ||||| || |||||||| ||| || |||
Sbjct 203 AAGTCATGAACTCTTATTTAAACCATGTTTTAGCCCAAGGGGAGGAGATTAAGCAG-AAT 261
Query 610 CTGAGAGTGGTGAAGCTTTATAGCAGAGATGT-G-TATGCTAGTGATGATGAT-GATGGA 666
|||||||||||||||||||||||| ||||||| | || | | ||||| || | ||||
Sbjct 262 CTGAGAGTGGTGAAGCTTTATAGCCGAGATGTTGGTAGG--ACCGATGACGACAG-TGGA 318
Query 667 ATGGCTGGT 675
|||||||||
Sbjct 319 ATGGCTGGT 327
> Ahg931705 jgi|Araly1|931705|scaffold_304162.1
Length=401
Score = 387 bits (209), Expect = 2e-106
Identities = 289/327 (88%), Gaps = 7/327 (2%)
Strand=Plus/Plus
Query 1172 CTGCTCTGCTACGTCCTGGAAGAATGGATGTGCATATCAACATGTCTTATTGTACAGGTT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGCTCTGCTACGTCCTGGAAGAATGGATGTGCATATCAACATGTCTTATTGTACAGGTT 60
Query 1232 TAGGATTTAGGACATTGGTCTCTAACTACCTTGGTTTAGATGGCTTAAACCATCCTCTTT 1291
|||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 61 TAGGGTTTAGGACATTGGTCTCTAACTATCTCGGTTTAGATGGCTTAAACCATCCTCTAT 120
Query 1292 GCGAGGAAATCGAGGCGCTGGTCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCTGAAG 1351
| || ||||| ||||||||| | ||||| || || || ||||| ||||||||||||||||
Sbjct 121 GTGAAGAAATTGAGGCGCTGATTGATTCCACAGAGGTGACTCCGGCTGAGTTAGCTGAAG 180
Query 1352 AGCTGATGCAAGACGATGATACTGACGTTGTTCTTCGTGGAGTAATAAGCTTTGTTGAGA 1411
|||| |||||||||||||| || || |||||||||||||||||| | |||||||||||||
Sbjct 181 AGCTAATGCAAGACGATGACACGGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTTGAGA 240
Query 1412 AGAGGAAGGTT-GAGAGAAGCAAGACTAAGAAG--G-AGGTTTCTATTTGTAAAGCAACT 1467
| || ||| || |||| |||||| || ||| || | ||| ||||| ||||||| | |||
Sbjct 241 ACAGAAAG-TTCGAGACAAGCAAAACCAAGGAGCTGGAGGATTCTAATTGTAAA-CTACT 298
Query 1468 -GATGATGACGAAAAACAGAATGGTTC 1493
|||| |||||||||||| ||||||||
Sbjct 299 TGATGGTGACGAAAAACACAATGGTTC 325
> Ahg931706 jgi|Araly1|931706|scaffold_304163.1
Length=337
Score = 278 bits (150), Expect = 1e-73
Identities = 246/292 (84%), Gaps = 8/292 (3%)
Strand=Plus/Plus
Query 94 ATGTTTCCTTCAT-CAGATTTCTCTTTCTCACCGTCGTCGCTGTTCTCAGCGTACGCATC 152
||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 24 ATGTTTCCTTCATCCA-ATTTCTCTTTCTCACCATCGTCGCTGTTCTCAGCGTACGCATC 82
Query 153 TTTAACCGGATTCTTGATGCTCTTTAGATCGATGCTCCATGATTTCGTACCGGAGAAGCT 212
|||||||||||||||||||||||||||||| || || ||||| ||||||| |||| |||
Sbjct 83 CTTAACCGGATTCTTGATGCTCTTTAGATCGTTGTTCAATGATATCGTACCAGAGAGGCT 142
Query 213 TCGATCTTACTTCTCC-AGCTTACTCGACCGGTTTTTCACTCCGAAATCAAAGTATCTCA 271
||||| ||| || || | ||||||| ||||||| || ||||||||||||||| || | |
Sbjct 143 CCGATCATACATCACCGA-CTTACTCAACCGGTTCTTGACTCCGAAATCAAAGAATTTGA 201
Query 272 CTGTGATCATCGACGAGAACTTCGGAT-TGAACCGGAATCAAGTCTTCGACGCGGCGGAG 330
|| || | |||||||||| |||||| | || |||| ||||| || ||||||||||||
Sbjct 202 CTATGGTTATCGACGAGATGATCGGATAT-AAGAGGAACCAAGTTTTTGACGCGGCGGAG 260
Query 331 ATGTATCTCAGGAGCAAGATCGGACCGGAAACAG-AGCGGTTGCGAGTTGGT 381
||||| ||| ||| ||| |||||||| || |||| | || || ||||| |||
Sbjct 261 ATGTACCTCCGGAACAAAATCGGACCAGAGACAGCA-CGTTTTCGAGTAGGT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5