BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18196.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319771 jgi|Araly1|319771|fgenesh1_pm.C_scaffold_3002787 821 0.0
Ahg355758 jgi|Araly1|355758|fgenesh1_pg.C_scaffold_7002931 429 2e-119
> Ahg319771 jgi|Araly1|319771|fgenesh1_pm.C_scaffold_3002787
Length=537
Score = 821 bits (444), Expect = 0.0
Identities = 507/538 (94%), Gaps = 2/538 (0%)
Strand=Plus/Plus
Query 59 ATGGGTTTCGGCTCCTTCATATCTACCATCACTTACTGTTTGTTCTTTCGCTATCCACAT 118
||| |||| ||||||||| |||||||| |||| |||||||||||| ||||| ||||||||
Sbjct 1 ATGAGTTTTGGCTCCTTCTTATCTACCCTCACATACTGTTTGTTCCTTCGCCATCCACAT 60
Query 119 AAGAAGCCAAAGTTCAAAAGTGTGAGCCACC-TCAACCATTACCACACCATGCCAATGGC 177
|| ||| ||||| |||| ||||||||||||| | ||| |||||||||||| ||||||| |
Sbjct 61 AAAAAGTCAAAGCTCAATAGTGTGAGCCACCAT-AACTATTACCACACCAAGCCAATGTC 119
Query 178 TCGTCCACTTTCTTTACAGACGATAGACCTGAAAGTAAGGATGTGTTGCAGTGGATGTGA 237
||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 120 TCGTCCACTTTCTTTACAGACAATAGACTTGAAAGTAAGGATGTGCTGCAGTGGATGTGA 179
Query 238 GAGGGTTGTCAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCT 297
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGGGTGGTTAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCT 239
Query 298 AGAGATGGAGAGAGTAACGGTGGTTGGGTACGTAGAGAGGAAGAAGGTGCTCAAGGCGGT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGAGATGGAGAGAGTAACGGTGGTTGGGTACGTAGAGAGGAAGAAGGTGCTCAAGGCGGT 299
Query 358 GAGAAGAGCCGGTAAACGAGCCGAGTTCTGGCCCTACCCGGACATGCCTCGCTACTTCAC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGAAGAGCCGGTAAACGAGCCGAGTTCTGGCCCTACCCGGACATGCCTCGCTACTTCAC 359
Query 418 TTCCTCTGACCATTACTTCAAAGATACCACCCGCGAGTTTAGGGAGAGCTACAACTACTA 477
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 360 TTCCTCCGACCATTACTTCAAAGATACCACCCGTGAGTTCAGGGAGAGCTACAACTACTA 419
Query 478 TCGCCATGGCTACAACCTTAGTGACCGTCACGGTAACATTCACGTCACCAACCGTGGTGA 537
||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 420 TCGCCATGGCTACAATCTTAGCGACCGTCATGGTAACATCCACGTCACCAACCGTGGCGA 479
Query 538 CGACAAAATGAGCAACTTTTTCAACGACGACAACGTCCACGCATGTAGCCTTATGTAA 595
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 CGACAAAATGAGCAACTTTTTCAACGACGACAACGTCCACGCCTGTAGCCTTATGTAA 537
> Ahg355758 jgi|Araly1|355758|fgenesh1_pg.C_scaffold_7002931
Length=459
Score = 429 bits (232), Expect = 2e-119
Identities = 285/310 (92%), Gaps = 6/310 (2%)
Strand=Plus/Plus
Query 59 ATGGGTTTCGGCTCCTTCATATCTACCATCACTTACTGTTTGTTCTTTCGCTATCCACAT 118
|||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1 ATGGGTTTGGGCTCCTTCATCTCTACCATCACATACTGTTTGTTCCTTCGCTATCCACAC 60
Query 119 AAGAAGCCAAAGTTCAAAAGTGTGAGCCACCTCAACCATTACCACACCATGCCAATGGCT 178
|||||||| ||| ||||| || ||||||||| |||||||||||||||||| ||||
Sbjct 61 AAGAAGCCTAAGCACAAAA--GT----CACCTCAACTATTACCACACCATGCCAAGGGCT 114
Query 179 CGTCCACTTTCTTTACAGACGATAGACCTGAAAGTAAGGATGTGTTGCAGTGGATGTGAG 238
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct 115 CGTCCACTTTCTTTACAGACGATAGACCTGACAGTAAGGATGTGCTGCAGTGGATGCGAG 174
Query 239 AGGGTTGTCAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCTA 298
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AGAGTAGTCAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCTG 234
Query 299 GAGATGGAGAGAGTAACGGTGGTTGGGTACGTAGAGAGGAAGAAGGTGCTCAAGGCGGTG 358
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 235 GAGATGGAGAGAGTTACGGTGGTTGGGTACGTGGAGAGGAAGAAGGTGCTCAAGGCAGTG 294
Query 359 AGAAGAGCCG 368
||||||||||
Sbjct 295 AGAAGAGCCG 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5