BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18210.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931710 jgi|Araly1|931710|scaffold_304167.1 592 2e-168
Ahg931709 jgi|Araly1|931709|scaffold_304166.1 399 1e-110
> Ahg931710 jgi|Araly1|931710|scaffold_304167.1
Length=415
Score = 592 bits (320), Expect = 2e-168
Identities = 374/401 (93%), Gaps = 0/401 (0%)
Strand=Plus/Plus
Query 93 CTTCAACTAATCCAGAAATGCAAATGCTAAGAAACTTAAGCACGAGGACGAGGAGTCGTC 152
||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||| ||||
Sbjct 4 CTTCAACCAATCCAGAAATGCAAATGCTAAGAACCCTAAGCACGAGGACAAGGAGCCGTC 63
Query 153 GCGGCGGATATGAGCGTGTAAGCGATGATTCCACCTTCAGCCTACTTGGAGCAAAGCTAA 212
| ||||||| || |||||||| ||||||||||| || ||| || | |||||||||||||
Sbjct 64 GTAGCGGATACGACCGTGTAAGAGATGATTCCACATTTAGCTTAATCGGAGCAAAGCTAA 123
Query 213 GGAGGTCAACGAGCGTTCCATACTATGCTCCATCGATAAGGCTTGGTGGAGATTTTCCTG 272
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| |||||||
Sbjct 124 GGAGGTCAACTAGCGTTCCGTATTATGCTCCATCAATAAGGCTTGGTGGAGACTTTCCTG 183
Query 273 TGATTTTGGAAAAGCTTCCACGCCAAAAACCAACTAAAACAGTGGTGACAAGCAAATTAA 332
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 184 CGATTTTGGAAAAGCTTCCACGCCAAAAACCAACTAAGACAGTGGTGACAAGCAAATTGA 243
Query 333 GCCATCCAATCTTCAGTTTATTTGATGGTTATCGCCGCCATAACAAGAAGAAAGCGACGG 392
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 244 GCCATCCAATCTTCAGTTTATTTGATGGTTATCGCCGCCGTAGCAAGAAGAAAGCGACGG 303
Query 393 CTAAACCGGAGTTCTCTAGATACCATGAATACCTTAAAGAAAGTGGAATGTGGGATTTGA 452
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTAAACCGGAGTTCTCTAGGTACCATGAATACCTTAAAGAAAGTGGAATGTGGGATTTGA 363
Query 453 GATCTAATAGTCCGGTCATCTACTTTAAGTAGATGTATATA 493
||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 GATCTAATACTCCGGTCATCTACTTTAAGTAGATGTATATA 404
> Ahg931709 jgi|Araly1|931709|scaffold_304166.1
Length=395
Score = 399 bits (216), Expect = 1e-110
Identities = 271/298 (91%), Gaps = 1/298 (0%)
Strand=Plus/Plus
Query 96 CAACTAATCCAGAAATGCAAATGCTAAGAAACTTAAGCACGAGGACGAGGAGTCGTCGCG 155
||| ||| |||||||||||||||||||||| | |||||||||| || ||||| ||||||
Sbjct 8 CAA-TAACCCAGAAATGCAAATGCTAAGAACCCTAAGCACGAGAACAAGGAGCCGTCGCA 66
Query 156 GCGGATATGAGCGTGTAAGCGATGATTCCACCTTCAGCCTACTTGGAGCAAAGCTAAGGA 215
| ||||| || |||||| || ||||||||||||| |||||||| ||||||||||||||||
Sbjct 67 GTGGATACGAACGTGTACGCAATGATTCCACCTTTAGCCTACTCGGAGCAAAGCTAAGGA 126
Query 216 GGTCAACGAGCGTTCCATACTATGCTCCATCGATAAGGCTTGGTGGAGATTTTCCTGTGA 275
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 127 GGTCACCGAGCGTTCCATACTATGCTCCATCGATAAGGCTTGGTGGAGACTTTCCTGCGA 186
Query 276 TTTTGGAAAAGCTTCCACGCCAAAAACCAACTAAAACAGTGGTGACAAGCAAATTAAGCC 335
|||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||
Sbjct 187 TTTTGGAAAAGCTTCCACGCCAAAAACCAAATAAGACAGTGGTGACAAGCAGCTTGAGCC 246
Query 336 ATCCAATCTTCAGTTTATTTGATGGTTATCGCCGCCATAACAAGAAGAAAGCGACGGC 393
|||||||||| ||||||||||| |||||||||||||||| |||||||||||| |||||
Sbjct 247 ATCCAATCTTTAGTTTATTTGAAGGTTATCGCCGCCATAGCAAGAAGAAAGCAACGGC 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5