BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18220.1
Length=2363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480727 jgi|Araly1|480727|fgenesh2_kg.3__3428__AT2G18220.1 3511 0.0
> Ahg480727 jgi|Araly1|480727|fgenesh2_kg.3__3428__AT2G18220.1
Length=2319
Score = 3511 bits (1901), Expect = 0.0
Identities = 2188/2322 (94%), Gaps = 37/2322 (2%)
Strand=Plus/Plus
Query 69 ATGGGTGCCAAAGATGATAAAAAGCGTGTGAAGAAGTTGAAATCT----AAG-A-AA-CT 121
||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 1 ATGGGTGCCAAAGATGATAAAAAGCGTGTGAAGAAGTTGAAATCTAAGAAAGTAGAAGCT 60
Query 122 -A-GA--AGC-TGAGGAAGAGCTCAAT-AATGTTCAAGAAATCGATGCACATGATATAGT 175
| || ||| ||||||| ||||| || | |||| ||||||| |||| | ||||||||||
Sbjct 61 GATGAGGAGCATGAGGAACAGCTC-ATGAGTGTTGAAGAAATGGATGAAGATGATATAGT 119
Query 176 AATGGAGCAGAAGAGCGATAAGAAGCGTGGGAAGAAGGTGAAATCTAAGAAAGCAGAAGC 235
| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TACGGATCAGAAGACCGATAAGAAGCGTGGGAAGAAGGTGAAATCTAAGAAAGCAGAAGC 179
Query 236 TGAGGAGCATGAAGAAGAGCTTAAGAGGCTTCAAGAAAAGGATC-CTGAtttttttCAGT 294
|||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 180 TGAGGAGCATGAAGAACAGCTTAAGAGGCTTCAAGAAAAGGA-CGCTGATTTTTATCAGT 238
Query 295 ATATGAAAGAGCATGATGCAGAGCTTCTAAAGTTTGATGCTACTGAAATTGAGGATGATG 354
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 ATATGAAAGAGAATGATGCAGAGCTTTTAAAGTTTGATGCTACTGAAATTGAGGATGATG 298
Query 355 CTGATGTTGAACCTGATACTGACCTGGAAGACACTGAAAAGGAAGGTGATGATGAAGCAA 414
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 CTGATGTTGAACCTGATACTGACTTGGAAGACACTGAAAAGGAAGGTGATGATGAAGCAA 358
Query 415 CAAAGATGGAAATTGCAAAGAAAGTGCACGT--GCAGAAAACGATTACAGCATCGATGGT 472
|||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 359 CAAAGATGGAAATTGCAAAGAAAGTG-A-GTGAGCAGAAAACGATTACAGCATCGATGGT 416
Query 473 TGATGCATGGAGTAAATCAATCGAAGATGAAGCGAAGCTAGGTGGAGTGCGTTCTATCTT 532
|||| ||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||
Sbjct 417 TGATTCATGGAGTAAATCAATCAAAGTTGACGCGAAGCTAGGTGCAGTGCGTTCTATCTT 476
Query 533 GAGAGCTTATAGAACTGCCTGTCACTATGGTGATGATACCGGGGACGATCAATCGACAAA 592
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAGAGCTTATAGAACTGCATGTCACTATGGTGATGATACCGGGGACGATCAATCGACAAA 536
Query 593 GTTTAGTGTTATGTCAAGTGAGGTGTTTAATAAGATAATGAT-ATATGTTCTGAGTGAAA 651
||| || ||||||||||| || |||||||||||||| ||| | ||| ||||||| |||||
Sbjct 537 GTTCAGCGTTATGTCAAGCGATGTGTTTAATAAGATTATG-TCATACGTTCTGATTGAAA 595
Query 652 TGGACGGGATTCTTCGTAAGTTGTTAAGGTTTCCTGAAGATACTAGAGGAACAAAAGAGA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGGACGGGATTCTTCGTAAGTTGTTAAGGTTTCCTGAAGATACTAGAGGAACAAAAGAGA 655
Query 712 CTATATTGGAGCTCACAAACACTAGGCCTTGGAAAAACTATAATCATTTAGTCAAATCAT 771
|||||||||| || | ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 656 CTATATTGGACCTGATGAACACCAGGCCTTGGAAGAACTATAATCATTTAGTCAAATCAT 715
Query 772 ATCTTGGGAATTCCCTTCATGTTCTGAACCAGATGACCGACACAGAAATGATAACCTTTA 831
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATCTCGGGAATTCCCTTCATGTTCTGAACCAGATGACCGACACAGAAATGATAACCTTTA 775
Query 832 CTCTGCGCCGCCTAAAGCACTCATCGGtttttttAGCTGCTTTTCCTAGCCTCCTAAGGA 891
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 776 CTCTGCGCCGCCTAAAGCACTCATCGGTTTTTCTAGCTGCTTTTCCTAGCCTCCTAAGGA 835
Query 892 AATATATTAAGGTTGCACTTCATTTCTGGGGAACTGGTAGTGGTGCGCTCCCTGTTGTTT 951
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 836 AATATATTAAGGTTGCACTTCATTTCTGGGGAACTGGTAGTGGCGCGCTCTCTGTTGTTT 895
Query 952 CCTTGTTGTTCCTGAGAGATTTGTGCATACGCCTTGGATCTGACTGTGTTGATGACTGTT 1011
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 896 CCTTGTTGTTCCTGAGAGATTTGTGCATACGTCTTGGATCTGACTGTGTGGATGACTGTT 955
Query 1012 TCAAGGGAATGTACAAAGCGTATGTGTTGAATTGCCAGTTTGTGAATGCTGATAAATTGA 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCAAGGGAATGTACAAAGCGTATGTGTTGAATTGCCAGTTTGTGAATGCTGATAAATTGC 1015
Query 1072 AGCATATTTCGTTTCTTGGTAACTGCTTCATTGAGCTTCTCGGCACAGATATCTCTGCAG 1131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGCATATTTCGTTTCTTGGTAATTGCTTCATTGAGCTTCTCGGCACAGATATCTCTGCAG 1075
Query 1132 CATATCAGCATGCATTTGTCTTCATAAGACAATTGGCAATGATTCTGCGTGAAGCGCTTA 1191
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 CATATCAGCACGCATTTGTCTTCATAAGGCAATTGGCAATGATTCTGCGTGAAGCGCTTA 1135
Query 1192 ACACAAAAACAAAAGAAGCATTTCGAAAAGTGTATCAATGGAAATTCATCCATTGCCTTG 1251
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1136 ACACAAAAACAAAAGAAGCATTTCGGAAAGTGTATCAATGGAAATTCATCCATTGCCTTG 1195
Query 1252 AGCTTTGGACTGGAGCTGTTTGTGCCTACAGCTCTCAGTCTGAACTCAGACCAGTTGCTT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AGCTTTGGACTGGAGCTGTTTGTGCCTACAGCTCTCAGTCTGAACTCAGACCAGTTGCTT 1255
Query 1312 ATCCGCTAGCCCAAATAATAACTGGTGTAGCGCGACTGGTTCCCACGGCTCGCTACACTC 1371
|||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1256 ATCCGCTAGCTCAAATAATAACTGGTGTAGCACGACTTGTTCCCACTGCTCGCTACACTC 1315
Query 1372 CCCTTAGACTAAGATGTGTTCGTATGCTAAACAGGCTTGCTGCTGCGACTGGCACCTTTA 1431
|||||||| ||||||||||||||||||||||| || |||||||| |||| || |||||||
Sbjct 1316 CCCTTAGAATAAGATGTGTTCGTATGCTAAACCGGATTGCTGCTTCGACCGGTACCTTTA 1375
Query 1432 TACCTGTCTCAATGCTTCTTGTGGACATGTTAGAGATGAAGGAGCTCAACAGACCTCCCA 1491
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1376 TACCTGTCTCAATGCTTCTCGTGGACATGTTAGAGATGAAGGAGCTCAATAGACCTCCCA 1435
Query 1492 CTGGAGGTGTTGGCAAAGGTGTAGACTTACGCACACTACTGAAGGTAAGTAAACCAGCAG 1551
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GTGGAGGTGTTGGCAAAGGTGTAGACTTACGCACACTACTGAAGGTAAGTAAACCAGCAG 1495
Query 1552 TGAAGACAAGAGCGTTTCAGGAGGCATGTGTTTATACAGTAGTGGAGGAGCTTGTGGAGC 1611
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1496 TGAAGACAAGAGCGTTTCAGGAGGCATGTGTTTATTCTGTAGTGGAGGAGCTTGTGGAGC 1555
Query 1612 ATTTGTCTCAGTGGAGTTGTTCCGTTGCTTTCTTTGAACTATCATTTATCCCGACCATAA 1671
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1556 ATTTGTCTCAGTGGAGTTGTTCCGTCGCTTTCTTTGAACTATCATTTATCCCGACCATAA 1615
Query 1672 GGCTGCGTAGCTTTTGCAAATCCACGAAAGCTGAGAGGTTTAGGAAAGAAATGAAGCAAC 1731
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1616 GGCTGCGTAGCTTTTTCAAATCCACCAAAGCTGAGAGGTTTAGGAAAGAAATGAAGCAAC 1675
Query 1732 TCATCAGCCAGATTGAAGCTAACTCAGAATTTGTCAACAAAAAGAGAGCTTTGATTAAGT 1791
|||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1676 TCATTAGCCAGATTGAAGCTAACTCAGAGTTTGTCAACAAAAAGAGAGCTTCGATTAAGT 1735
Query 1792 TTCTACCCAATGATCTTGCTGCTGAATCATTCCTTGAGGATGAGAAGAAAGCAGGAAAAA 1851
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1736 TTCTACCCAATGATCTTGCTGCTGAATCATTCCTTGAGGATGAGAAGAAGGCAGGAAAAA 1795
Query 1852 CCCCTCTATTGCAATATGCGGAAATTATCCGCCAAAGAGCCCAGCAAAGAAACGAATCGC 1911
||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1796 GCCCTCTATTACAATACGTGGAAATTATCCGCCAAAGAGCTCAGCAAAGAAACGAATCGC 1855
Query 1912 TGGTGGAATCTGATGTAATTGTGGGAGAGAACTCAGCTGTCTTTGGGAAAAACGCACCAA 1971
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1856 TGGTGGAATCTGATGTTATTGTGGGAGAGAACTCAGCTGTCTTTGGGAAAAATGCACCAA 1915
Query 1972 GCAGTGATGATGAAGATGATGAAGATAGGATGGAAAAGGGTGCTGCAGCTTTCAATTCTT 2031
||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||
Sbjct 1916 GCAGTGATGATGAAGATGATGCAGATAGGATCGAAAAGGGTGCTTCAGCTTTCAATTCTT 1975
Query 2032 CTTGGTTACCGGGAAGTGACTCCaaagaaaaagagccggaagaagagaaaacgaaaaaga 2091
| |||||||| |||||||||||||||||||| |||||||| |||||| | ||||||||||
Sbjct 1976 CCTGGTTACCAGGAAGTGACTCCAAAGAAAAGGAGCCGGAGGAAGAGCAGACGAAAAAGA 2035
Query 2092 agaaaaggaagagaggtggaaagagtaaaacagagaagaagCAGGATGAGCAAGGCTTAG 2151
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 2036 AGAAAAGGAAGAGAGGTGGTAAGAGTAAAACAGAGAAGCAGCAGGACGAGCAAGGCTTAG 2095
Query 2152 GAGAAGATGACGTTGTGGAGGATTTTGTGTTGAGTTCTGATGAAGAGGAAGA-G--GATC 2208
|||||||||| |||||||| |||||||||||||||||||||||||| ||||| | ||||
Sbjct 2096 GAGAAGATGATGTTGTGGAAGATTTTGTGTTGAGTTCTGATGAAGAAGAAGAAGATGATC 2155
Query 2209 TGTTTGATATAGGAGGAGACAAAGATGAAGATGATGCAGTAGACGAAATTGCAGATCCTG 2268
|||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 2156 TGTTTGATATTGGAGGAGACAAAGATGAAGATGATGCAGCAGACGAAATTACAGATCCTG 2215
Query 2269 AGACCAAGACATCTAAGAAGA-CT--AAG--G-----G--CACTTATAAGACCTGGCATA 2316
|||||||||||||||| |||| || ||| | | |||||| |||||||||||||
Sbjct 2216 AGACCAAGACATCTAATAAGAACTCTAAGAAGACCAAGGGCACTTACAAGACCTGGCATA 2275
Query 2317 AGGCTTACAAAAAGACCAAGAAGAAGAAGGCCCGAGTAGCTT 2358
|| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 2276 AGACTTACAAGAAGACCAAGAAGAAGAAGCCCCGAGTAGCTT 2317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89016902565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5