BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18240.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480729 jgi|Araly1|480729|fgenesh2_kg.3__3430__AT2G18240.2 1360 0.0
> Ahg480729 jgi|Araly1|480729|fgenesh2_kg.3__3430__AT2G18240.2
Length=1043
Score = 1360 bits (736), Expect = 0.0
Identities = 873/936 (93%), Gaps = 21/936 (2%)
Strand=Plus/Plus
Query 180 CCATGGAAGACGAACCAGGAAGCGAAAATGAAGCAGACACCATAGTTGCTTCACCACTTG 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 118 CCATGGAAGACGAACCAGGAAGCGAAAATGAAGGAGACACCATAGTTGCTTCACCACTTG 177
Query 240 CAAAATGGAGAATCGAATTCTCGAAATCGTTTCAGAATTACTTAGACAGATCTGCTCCTA 299
| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 178 CGAAATGGAGAATTGAATTCTCGAGATCATTTCAGAATTACTTAGACAGATCTGCTCCTA 237
Query 300 ACATTGTTCGAAGATGGCTTGTGACTTTAGTCGCTGCAGTGATCTATATCTATAGGGTTT 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 ACATTGTTCGAAGATGGCTTGTGACTTTAGTCGCTGCTGTGATCTATATCTATAGGGTTT 297
Query 360 ACTCTGTTTATGGATACTTCGTTATCTCTTATGGCTTAGCTACTTATATCTTAAATCTCT 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 ACTCTGTTTACGGATACTTCGTTATCTCTTATGGCTTAGCTACTTATATCTTAAACCTCT 357
Query 420 TGATTGGTTTCCTTTCCCCTAAAGTTGATCCTGAACTTGAAGCTTTGGATCCTGATTCTT 479
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGATTGGTTTCCTCTCTCCTAAAGTTGATCCTGAACTTGAAGCTTTGGATCCTGATTCTT 417
Query 480 TACCTGTTGATGAGTCTGATGAGTATAAGCCCTTTGTTCGTCGTCTTCCTGAGTTCAAGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TACCTGTTGATGAGTCTGATGAGTATAAGCCCTTTGTTCGTCGTCTTCCTGAGTTCAAGT 477
Query 540 TCTGGTATGCAGCGACTAAAGCATTTGTTGTTGCATTTGTGATGACATTCTTCTCTTTCC 599
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 478 TCTGGTATGCAGCTACTAAGGCATTTGTTGTTGCATTTGTGATGACTTTCTTCTCCTTCT 537
Query 600 TGGATGTGCCTGTGTTCTGGCCGATCTTGTTGTGTTACTGGTTGGTTTTGTATTCTTTAA 659
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |
Sbjct 538 TGGATGTGCCTGTGTTCTGGCCAATCTTGTTGTGTTACTGGTTGGTTCTGTATTCTCTCA 597
Query 660 CTATGAAACGCTTAATCGTGCACATGTTCAAGTATAGATACTTTCCTTTCGATGTAAGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTATGAAACGCTTAATCGTGCACATGTTCAAGTATAGATACTTTCCTTTCGATGTAAGAA 657
Query 720 AGCCTGTGAAGCTGCTCAAGTTTCTTGTAAACAGTGTCCTGACCTTTTTAAGACTCAAGA 779
||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 658 AGCCTGTAAAGCTGCTCAAGTTTCTTGTTCACAGTTTCCTTACCTTTTTAAGACTCAAGA 717
Query 780 AGGG-TGATGGTGGAGATGATAGGCCCAGCAGCAGCAATTCATCTCAGGGAAATGAAAAA 838
||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 -GGGATGGTGGTGGAAATGATAGGCCCAGTAGCAGCAATTCATCTCAGGGAAATGAAAAA 776
Query 839 CAAGATTAGATGCGAACAGTAGATCAGGTACTGATCTCGACGTGGTGATAGGCGAAGCAA 898
|| ||||||||| |||| ||| |||||||||||||||| |||||||||||||||||| |
Sbjct 777 CAGGATTAGATGTGAACCGTACATCAGGTACTGATCTCTACGTGGTGATAGGCGAAGGAC 836
Query 899 GAAAGGATACAAACTAAG--GA------TATCAAAGTAAAATATACTATAGCCATGCTGG 950
|||||||||||||||||| || |||||| ||||| | |||||||| ||||||||
Sbjct 837 GAAAGGATACAAACTAAGAAGAGAAGAATATCAA-GTAAATTGTACTATAGTCATGCTGG 895
Query 951 TGGAATAGGAAAACAAA-GTTCTTGAAGCTTAACAGAACTAAGAAATCTCTCTGA-GTTT 1008
|||| |||||||||||| |||||||||||||| |||||||||||||||||||| | ||||
Sbjct 896 TGGACTAGGAAAACAAAAGTTCTTGAAGCTTATCAGAACTAAGAAATCTCTCTTATGTTT 955
Query 1009 TGAGTAATCTCCTGCATTTTCCGGTTTTTGCATTGTAATGTGTAACAGTGTATTTTACAA 1068
|||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 956 TGAGTAAT-----GCATTTTCTGGTTTT--CATTGTAATGTGTAACAGTGTATTT-ACAA 1007
Query 1069 TTATACGTTTAAATGAATTTGGGAATCACAAGTAGG 1104
|||||||||||||||||||||||||||||| |||||
Sbjct 1008 TTATACGTTTAAATGAATTTGGGAATCACATGTAGG 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5