BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18245.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480731 jgi|Araly1|480731|fgenesh2_kg.3__3432__AT2G18245.1 1816 0.0
> Ahg480731 jgi|Araly1|480731|fgenesh2_kg.3__3432__AT2G18245.1
Length=1377
Score = 1816 bits (983), Expect = 0.0
Identities = 1195/1296 (92%), Gaps = 19/1296 (1%)
Strand=Plus/Plus
Query 19 AGCGATTTGACGAGAAGAGCTTTTTGGTTTCTGCGAATCATCCAAAATCCGCCATGGAAG 78
|||||||| ||||||||| | ||||||||||| | |||||||||||||||||||||||||
Sbjct 1 AGCGATTTTACGAGAAGAACCTTTTGGTTTCTCCCAATCATCCAAAATCCGCCATGGAAG 60
Query 79 CAACTACAAGAATCTTGAGTACTTCTTCTGCTCTCAATCGTCTTCTTCTTCTCAGTAAGC 138
|| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 61 CAGCTACAAGAATCTTGAGAACTTCTTCTGCTATCAATCGTCGTCTTCTTCTCAGTAAGC 120
Query 139 TCAATCTAAAATCAGATCCCCGTAATATCAATTCCACAAATCAGCTACTACACAATGCCG 198
| |||||||||||||||||||| || | | | | | ||||||||||||||||||
Sbjct 121 TTAATCTAAAATCAGATCCCCG---TA-CGA-T---C--A--AGCTACTACACAATGCCG 168
Query 199 TTACCCGAAAATCCTCTATCTCCGCCGCTCGTATACGGTGCTCTTCGCTCCCTGCGAATG 258
|| || || ||||||||||||||||| ||||||||| ||||||||||| || | |||
Sbjct 169 TTTCCAGAGAATCCTCTATCTCCGCCTTTCGTATACGATGCTCTTCGCTTCCACCCAATT 228
Query 259 CGAATCTCTTCAGATCACTCTTCTTCCTAACGTCAACGTTTCGTCTCGAGAACACCGCCG 318
|||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 229 CGAATCTCTTCAAATCACTCTTCTTCCTTACGTCAACGTTTCGTTTCGAGAACACCGCCG 288
Query 319 TTCACGCTAATCCATTCCGATCCGAACCTAACGACGGCGTCGCCGTCTGGAACAGAGCTC 378
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 289 TTCACGCTAACCCATTCCGATCCGAACCTAACGATGGCGTCGCTGTCTGGAACAGAGCTC 348
Query 379 CACGGA-TCGTGAACGGAGGTGGAAACGCGGCGATATTCGGCGGGAACGAGGGGAAAGAG 437
|||||| | ||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct 349 CACGGAGT-GTGAACGGAGGTGGAGACGCGGCGATATTCGGCGGG-A--AGGAGAAAGAG 404
Query 438 ACGACGGTGGTTCTCCTTGGTTGGCTAGGAGCGAAAGCTAAACATC-TAAGGAGATACGT 496
||||| |||||||| || |||||| | ||||||||||| ||||| | |||||||||||||
Sbjct 405 ACGACCGTGGTTCTTCTCGGTTGGTTGGGAGCGAAAGCGAAACA-CTTAAGGAGATACGT 463
Query 497 TGAGTGGTACAACTCCAGGGGAATTAACGCCGTTACTTTCACTGTTGACGTTAGGGATTT 556
|||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 464 TGAGTGGTACAATTCCAGAGGAATTAACGCCGTTACTTTCACCGTCGACGTTAGGGATTT 523
Query 557 GCTCCGGTTAGATCTTGGTCGGCGGCTTGAACGAAGGATAGCTGAATTTGGGAATGAATT 616
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 524 GCTCCGGTTAGATCTTGGTCGGAGGCTTGAACGACGGATAGCTGAATTTGGGAATGAATT 583
Query 617 GGTTAATTGGGTATCGGAGAAAGAAGATGATGGTAGAGAGAAATGCTTGGTGTTTCACAG 676
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 584 GGTCAATTGGGTATCGGAGAAAGAAGATGATGGTAGAGAGAAATGCTTGGTGTTCCACAG 643
Query 677 TTTCAGTAACACTGGTTGGCTTGTATATGGTGCCTTGCTAGAGAGCTTCATTGGTAGACA 736
|||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 644 TTTCAGTAACACCGGTTGGCTTGTCTATGGTTCCTTGCTAGAGAGCTTTGTTGGTAGACA 703
Query 737 AGATTTAGTAGAAAGGATTAAGGGTTGTATCATTGACTCGGGAGGAGCAGATCCTCTTGA 796
|||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 704 AGATTTAGTAGAAAAGATTAAAGGTTGTATCATCGACTCGGGAGGAGCAGATCCTCTAGA 763
Query 797 TACTAAGATTTGGGCAGCGGGGTTTACCGCGGCTATACTGAAGAAGCGTAGCTCCACCAT 856
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 764 TACTAAGATTTGGGCAGCCGGGTTTACTGCTGCTATACTGAAGAAGCGGAGCTCCACCAT 823
Query 857 AACCACAGAACCAAACAGTCCCATAAAAGAAGAGGATGCTTCAACACCACAAAAGAAGGA 916
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 824 AACCACAGAACCAAACAGTCCCATAAAAGAAGACGATGCTTCAACCCCACAAAAGAAAGA 883
Query 917 ACCTTTAGGAATCGAAAACATAATGCTATCATCTCTGGAGAAACTCTTCCCCATCTTCTT 976
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 884 ACCTTTAGGAATCGAAAACATGATGCTATCATCTCTAGAGAAACTTTTCCCCATCTTCTT 943
Query 977 AAACCACCCAGACGTCAATACGAGGCTAACAAAAATCATTCAAAAACTATATGAGAACCA 1036
||||| ||| || ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 944 AAACCTCCCGGAAGTCAATACGAGGCTAACGAAAATCATCCAAAAACTATATGAGAACCA 1003
Query 1037 TCCTCCATGTCCTCAGCTCTATCTTTACAGCTCCGGGGACAAAGTTGTTCCATCTCATTC 1096
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1004 TCCTCCATGTCCTCAGCTCTATCTTTACAGCTCAGGGGACAAAGTTGTTCCGTCTCATTC 1063
Query 1097 CGTTGAGCTCCGCATCCGAGAACAACAGAAGATTGGAAGAAAGATACATTCTTTCAATTT 1156
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1064 CGTTGAGCTCCGCATCCGAGAACAACAGAAGATGGGAAGAAACATACATTCTTTCAATTT 1123
Query 1157 CAAGTCCTCTCCTCACGTGGATCATTACCGGAACTTTCCTGACTTGTATTCCTCACAGCT 1216
||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CAAGTTCTCTCCTCATGTCGATCATTACCGGAACTTTCCTGACTTGTATTCCTCACAGCT 1183
Query 1217 TCAAAACTTCTTGCAAGAATGCTTCACACCAACAAAACAACAAGCTCTGTGACTTTGGAA 1276
||| |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 1184 TCAGAACTTCTTGCAAGAATGCCTCACACCAACAAAACGACAAGCTCTGTGACATTGGAA 1243
Query 1277 CATCtttttttGCAGAATATTTGTAGCCTTGGTTTG 1312
||| |||||||||||||| ||||||||| |||||||
Sbjct 1244 CATATTTTTTTGCAGAATCTTTGTAGCCGTGGTTTG 1279
Score = 141 bits (76), Expect = 1e-32
Identities = 93/101 (92%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 1346 TTGATGATAGAACAAGATAATCCGAAGGAGACAGAAACTCCAAACTGTGTCGACGAGCTA 1405
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1277 TTGATGATAGAACAAGATAATCCGAAGGAGACAGAAACTCGAAATTGTGTCGACGTGCTA 1336
Query 1406 CTGAG-CAGAGATAGTTTCTGAAACTCTTAGATTGTTGTTG 1445
||||| | | ||| |||||||||||||||| ||||||||||
Sbjct 1337 CTGAGGCTGGGATTGTTTCTGAAACTCTTATATTGTTGTTG 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5