BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18250.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480732 jgi|Araly1|480732|fgenesh2_kg.3__3433__AT2G18250.1 1038 0.0
> Ahg480732 jgi|Araly1|480732|fgenesh2_kg.3__3433__AT2G18250.1
Length=803
Score = 1038 bits (562), Expect = 0.0
Identities = 705/773 (91%), Gaps = 13/773 (2%)
Strand=Plus/Plus
Query 61 GAACTCGATTTATTGGTTCTAAAGTCTCCAAATCAGAA-AATTCAGAGACGAGCCCTAAA 119
||| |||| || |||| | | |||||||||||||| || ||||||||||||| |||||||
Sbjct 35 GAATTCGA-TTCTTGGGTGTGAAGTCTCCAAATCA-AATAATTCAGAGACGAACCCTAAA 92
Query 120 TGGCAGCTCCGGAAGATTCAAAGATGTCTCCGGCGAATTCGTTTGGAGCTGTCGTTCTCG 179
|||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 93 TGGCAGCTACTGAAGATTCGAAGATGTCTCCGGCGAATTCGTTTGGTGCTGTCGTTCTCG 152
Query 180 GCGGTACGTTTGATCGATTACACGATGGGCATCGAATGTTCCTCAAGGCGGCGGCGGAGC 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 153 GCGGTACGTTTGATCGATTACACGATGGGCATCGAATGTTCCTCAAGGCAGCGGCGGAGC 212
Query 240 TGGCCAGGGATCGGATCGTAGTGGGAGTCTGTGATGGCCCAATGTTGACGAAAAAGCAAT 299
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 213 TGGCTAGGGATCGGATCGTAGTGGGAGTATGTGATGGCCCAATGTTGACGAACAAGCAAT 272
Query 300 TCTCTGACATGATTCAACCCATTGAAGAAAGGATGCGTAATGTGGAGACCTATGTCAAGT 359
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 273 TCTCTGAGATGATACAACCCATTGAAGAAAGGATGCGTAATGTGGAGAACTATGTCAAGT 332
Query 360 CTATCAAGCCCGAGCTGGTTGTACAAGCCGAACCCATTACAGATCCATATGGCCCTTCTA 419
|||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 333 CTATCAAGCCCGAGCTGGTTGTACAAGCTGAACCCATTAGTGATCCATATGGTCCTTCTA 392
Query 420 TCGTAGATGAAAATTTGGAAGCTATTGTTGTCAGCAAAGAGACATTACCTGGTGGCTTGT 479
|||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 393 TCGTCGATGAAAATTTGGAAGCTATTGTAGTCAGCAAGGAGACGTTACCCGGTGGCTTGT 452
Query 480 CAGTTAACAGAAAAAGAGCAGAAAGAGGTCTTTCACAGCTTAAGATTGAAGTTGTGGAAA 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 453 CAGTTAACAGAAAAAGAGCAGAAAGAGGTCTTTCACAACTTAAGATTGAAGTTGTGGAAA 512
Query 540 TAGTTTCTGATGGATCGAGTGGAAATAAGATAAGTTCAAGTACTCTGAGAAAAATGGAGG 599
|||||||||||||||| ||||| || ||||||||||| |||||||||||||| |||| |
Sbjct 513 TAGTTTCTGATGGATCAAGTGGGAACAAGATAAGTTCGAGTACTCTGAGAAAGTTGGAAG 572
Query 600 CTGAGAAAGC-GTCTAAACAAAAACAACCAGCAGAAGAAAAAGCATCATGAACTCATCAT 658
|||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 573 CTGAGAAAGCCGA-TAAACAAAAACAACCGGCAGAAGAAAAAGCATCATGAACTCATCAT 631
Query 659 ATATAAAC---TCTCAACTTTGCATGTAATTTAATACTCTTTTGTATACTCAAAATGCTG 715
| | ||| ||||||||||| ||||||||||||| ||| ||||||| ||||||||||
Sbjct 632 ACAAAAAAAAATCTCAACTTTGGTTGTAATTTAATACGCTTCTGTATACCCAAAATGCTG 691
Query 716 TAAATTGGATGCAATAGATCAATAAAGGTCCAAGCTTTGCATTCTTTAACTCGGAATATG 775
|||||||| | || ||||||||||||||||||||||||||||| ||||||| || | |
Sbjct 692 TAAATTGGCTTAAACAGATCAATAAAGGTCCAAGCTTTGCATTCCCTAACTCGAAACAAG 751
Query 776 AACTAGTCCT--GT-AAAATCAACTTTTGGT-CAATAAAGGTCAAGACTTTTT 824
|||||||| | || |||||||||||| ||| ||||||||||| |||||||||
Sbjct 752 AACTAGTCATATGTGAAAATCAACTTT-GGTTCAATAAAGGTCTAGACTTTTT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5