BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18260.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480733 jgi|Araly1|480733|fgenesh2_kg.3__3434__AT2G18260.1 1709 0.0
> Ahg480733 jgi|Araly1|480733|fgenesh2_kg.3__3434__AT2G18260.1
Length=1052
Score = 1709 bits (925), Expect = 0.0
Identities = 1025/1070 (96%), Gaps = 20/1070 (2%)
Strand=Plus/Plus
Query 28 ATGAATGATCTGATGACAAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAAGCGAGG 87
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 ATGAATGATCTGATGACAAAATCGTTCTTAAGTTATGTTGAATTGAAGAAACAAGCGAAG 60
Query 88 ACAGATATGGAATCTGATCGAGATTTGGAGAAAGGTGAAGACTTTAACTTCGATTTCAGT 147
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGATCTGGAATCTGATCGAGATTTGGAGAAAGGTGAAGACTTTAACTTCGATTTCAGT 120
Query 148 CCCGCAGATGAAGAAAACCTCTCTGGTTTCTTTCAAGAAATCGAAACCATCAAAACCCTA 207
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGCGGATGAAGAAAACCTCTCTGGTTTCTTTCAAGAAATCGAAACCATCAAAACCCTA 180
Query 208 ATCGAAGAGATCACTCATCTCTTACTCGATCTCCAAAACCTAAACGAAGAGACCAAATCA 267
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 ATCGAAGAGATCACTCATCTCTTACTCGATCTCCAAAACCTAAACGAAGAAACCAAATCA 240
Query 268 ACTCACAGCACCAAGATCTTACGTGGGTTGCGAGACAGAATGGAATCAAACATCGTCACC 327
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 ACTCACAGTACCAAGATCTTACGTGGGTTAAGAGACAGAATGGAATCAAACATCGTCACC 300
Query 328 ATCTCTCGTAAGGCCAACACAGTCAAAACCCTAATCGAGACTCTGGAGAAGAGAAACGTT 387
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ATCTCTCGTAAGGCCAACACAGTCAAAACCCTAATCGAGACTCTTGAGAAGAGAAACGTT 360
Query 388 GCGAATCGTACGAGTTTCAAGGAAGGATCTTGCGTGGACAGGACAAGAACTTCGATCACT 447
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 361 GCGAATCGTACGAGTTTCAAGGAAGGATCTTGCGTGGATAGGACAAGAACTTCGATAACT 420
Query 448 AATGGAGTTAGAAAGAAACTTAGAGATACGATGAGTGAGTTTCATCGATTGAGGGAGAGA 507
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 421 AATGGAGTTAGAGCGAAACTGAGAGAGACGATGAGTGAGTTTCATCGATTGAGGGAAAGA 480
Query 508 ATCTTTGCTGATTACAGAGAAGATCTCAAAAGGAAGTATTTTTTAGCGACTGGTGAAGAA 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCTTTGCTGATTACAGAGAAGATCTCAAAAGGAAGTATTTTTTAGCGACTGGTGAAGAA 540
Query 568 CCAAGTAATGAAGACATGGAGAAGATGATCTCTGGATCAGGGTCTTGTTCTGATTTGGTT 627
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 CCAAGTAATGAAGACATGGAGAAGATGATCTCTGGATCTGGGTCTTGTTCTGATTTGGTT 600
Query 628 AAAACATTTGAAGTGAAGCCAGAGATGGATTTGAAGACTAAAGAGAGACATGAAGCAGTG 687
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGACATTTGAAGTGAAGCCAGAGATGGATTTGAAGACTAAAGAGAGACATGAAGCAGTG 660
Query 688 AATGATATCAAGAGAAGTCTTAATAGGCTTCATCAAGTGTTTCTTGACATGGCTGTTCTT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATGATATCAAGAGAAGTCTTAATAGGCTTCATCAAGTGTTTCTTGACATGGCTGTTCTT 720
Query 748 GTTGAGACTCAAGGAGATCGTATTGATGACATTGAAGCTAATGTGGCTAATGCAGGGAGC 807
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GTTGAGACTCAAGGAGATCGAATTGATGACATTGAAGCTAATGTTGCTAATGCAGGGAGC 780
Query 808 TTTGTGAGTGGAGGTACTAATAGTTTGTACTATGCTAATCAGATGAAGAAGAAGACTAAG 867
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTGTGAGTGGAGGGACTAATAGTTTGTACTATGCTAATCAGATGAAGAAGAAGACTAAG 840
Query 868 AGTTGGGTTCTTTGGGTTTCGATTTTGGGTGTTCTTATTCTTCTTGTGTGTGTCATCTCA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTTGGGTTCTTTGGGTTTCGATTTTGGGTGTTCTTATTCTTCTTGTGTGTGTCATCTCA 900
Query 928 ATGCTTGCTTCTCGTT--GAGATTTGGTTGCTTTCTTGTGTTCTTTTGCCATTGTTCTAG 985
|||||||||||||||| |||||||||||| || ||| | | | || ||||
Sbjct 901 ATGCTTGCTTCTCGTTAAGAGATTTGGTTG-TT-CTT-T-T------G---TT---CTAG 944
Query 986 TTTTATTTTCATTAGATGTTTTCATGATTTGTGTATCAGAATGAAACTTCAGGTTTTGTA 1045
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 945 TTTTATTT-CATTAGATGTTTTCATGATTTGTGTATCAGAA-GAAACTTCAGGTTTTGTA 1002
Query 1046 TTCATGAATCTTTGTCCACAGATCTTTTGTGTTGATCATGTTAATGTCTA 1095
|||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1003 TTCATGAATCTTTGTCCACAAATCTTTTGTGTTGATCATATTAATGTCTA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5