BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18280.1 Length=1900 Score E Sequences producing significant alignments: (Bits) Value Ahg480735 jgi|Araly1|480735|fgenesh2_kg.3__3436__AT2G18280.2 2209 0.0 > Ahg480735 jgi|Araly1|480735|fgenesh2_kg.3__3436__AT2G18280.2 Length=1960 Score = 2209 bits (1196), Expect = 0.0 Identities = 1388/1481 (94%), Gaps = 11/1481 (1%) Strand=Plus/Plus Query 407 ATTG-AGCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATCCT 465 |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 ATTGCAGTTATTGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATCCT 499 Query 466 TCGTGATCTGAAGGAAGTGAGGGATGGACTTGGAGGCATCTCCAAGAGAAGCTGGTCAAA 525 ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 500 TCGTGATTTGAAGGAAGTGAGAGATGGACTTGGAGGCATCTCCAAGCGAAGCTGGTCAAA 559 Query 526 GTCGTCTCACATTGCTCCTGATCAAACAACTCCACCACTGGATAACATACCACAGAGCCC 585 |||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||| Sbjct 560 GTCGTCTCACATTGCTCCTGATCAAACAACTCCACCACCGGAAAACATCCCGCAGAGCCC 619 Query 586 ATGGGCTTCTTTGCCGCCTGAGTTGCTTCATGACATTATCTGGAGGGTTGAAGAGAGTGA 645 ||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 620 ATGGGCTTCGTTACCACCTGAGTTGCTTCATGACATTATCCGGAGGGTTGAAGAGAGTGA 679 Query 646 GACAGCTTGGCCCGCTCGAGCTGCCGTTGTCTCTTGTGCTTCAGTATGTAAATCATGGAG 705 ||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 680 GACTGCTTGGCCCGCTCGAGCTGCTGTTGTCTCTTGTGCTTCTGTCTGTAAATCATGGAG 739 Query 706 AGGAATCACTATGGAGATTGTGAGGATCCCTGAGCAGTGTGGGAAGCTCACTTTTCCAAT 765 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 740 AGGAATCACTATGGAGATTGTGAGGATCCCTGAGCTGTGTGGGAAGCTCACTTTTCCAAT 799 Query 766 CTCATTGAAACAGCCGGGGCCTCGAGACTCTCCAATTCAATGTTTTATTAAGAGGAACAG 825 |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 800 CTCATTAAAACAGCCGGGGCCGCGAGACTCTCCAATTCAATGCTTTATTAAGAGGAACAG 859 Query 826 AGCAACAGCTACATACATTCTCTATTATGGTTTGATGCCTTCGGAGACTGAGAACGACAA 885 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 860 AGCAACAGCTACATACATTCTCTATTATGGTTTGATGCCTTCTGAGACAGAGAACGACAA 919 Query 886 ACTGTTGTTAGCAGCAAGAAGGATTAGAAGAGCGACATGCACAGACTTTATAATCTCCCT 945 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 920 ACTGTTGTTAGCAGCAAGAAGGATTAGAAGAGCGACGTGCACGGACTTTATAATCTCGCT 979 Query 946 ATCTGC-AAAGAACTTCTCACGGAGCAGCAGTACTTATGTTGGCAAATTAAGGTCTGGTT 1004 ||| || ||| |||||||||||||||||||| || |||||||||||| |||||||||||| Sbjct 980 ATCGGCGAAA-AACTTCTCACGGAGCAGCAGCACATATGTTGGCAAACTAAGGTCTGGTT 1038 Query 1005 TTCTGGGAACCAAGTTCACAATATATGACAACCAAACAGCATCATCCACAGCACAAGCCC 1064 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1039 TTCTGGGAACCAAGTTCACAATATATGACAACCAAACAGCATCATCCACAACACAAGGCC 1098 Query 1065 AACCTAACCGAAGACTCCACCCGAAACAAGCGGCTCCTAAACTACCTACGAATAGCTCTA 1124 |||||||||||||||| ||||| || |||||||| || ||| ||||| | |||||||||| Sbjct 1099 AACCTAACCGAAGACTTCACCCCAAGCAAGCGGCCCCAAAAGTACCTGCTAATAGCTCTA 1158 Query 1125 CCGTAGGAAACATAACCTACGAGCTCAATGTTCTTCGCACAAGGGGACCTAGAAGAATGC 1184 | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1159 CTGTAGGAAATGTAACCTATGAGCTCAATGTTCTTCGCACAAGGGGACCTAGAAGAATGC 1218 Query 1185 ACTGCGCTATGGATTCTATACCCCTCTCTTCTGTTATTGCTGAACCGTCAGTAGTTCAAG 1244 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1219 ATTGCGCTATGGATTCTATACCCCTCTCTTCTGTTATTGCTGAACCATCAGTAGTTCAAG 1278 Query 1245 GCATAGAAGAGGAAGTCTCTTCCTCTCCTTCACCAAAAGGAGAAACCATCACAACAGACA 1304 || |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1279 GCCTAGAGGAGGAAGTCTCTTCCTCGCCTTCACCAAAAGGAGAAACCAGCACAACAGACA 1338 Query 1305 AAGAGATTCCTGATAATT-CTCCAAGCTTAAGGGACCAACCGCTAGTTCTCAAAAACAAA 1363 ||||| | |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 1339 AAGAGGTACCTGAT-ATTACTCCAAGCTTAAGGGACCAGCCGCTAGTTCTCAAAAACAAA 1397 Query 1364 TCCCCAAGATGGCATGAGCAGTTGCAGTGCTGGTGCCTCAACTTCAAGGGAAGAGTGACT 1423 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1398 TCCCCAAGATGGCACGAGCAATTGCAGTGTTGGTGCCTCAACTTCAAGGGAAGAGTGACC 1457 Query 1424 GTGGCTTCAGTTAAGAATTTCCAGCTTGTTGCAGAGATTGACGCTTCTTTGGATGCGCCG 1483 ||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct 1458 GTGGCTTCAGTCAAGAATTTCCAGCTTGTTGCAGACATTGACGCTGCTTTGGTTGCGCCG 1517 Query 1484 CCTGAAGAACATGAGAGGGTGATCTTACAGTTTGGCAAAATCGGTAAGGATATTTTCACC 1543 | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 1518 CGTGAAGAACATGAGAGGGTGATCTTACAGTTTGGCAAAATAGGTAAGGACATTTTTACC 1577 Query 1544 ATGGATTATCGCTACCCTCTATCTGCTTTTCAAGCCTTTGCTATATGCATTAGCAGCTTT 1603 |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 1578 ATGGATTATCGCTACCCTCTCTCTGCTTTCCAAGCCTTTGCTATATGCATCAGCAGCTTT 1637 Query 1604 GACACCAAACCGGCATGTGAAGGGTAAACTTTAACCCACCGAGTTAAATCCATCTCTGCA 1663 |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| Sbjct 1638 GACACCAAACCGGCATGTGAAGGGTAAA-GTTAA--C-CCGAGTTAAATCCATCTCTGCA 1693 Query 1664 AATCATCATAGAAGGCTTTTCTTATCTTTAGGTTTCAATGTATCAATCCACGAAAAGCTC 1723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1694 AATCATCATAGAAGGCTTTTCTTATCTTTAGGTTTCAATGTATCAATCCACGAAAAGCTC 1753 Query 1724 TTTGTATGTAGATTGTTGTAGCTCTTTTGAACTATGCTTTAAATCCGTATCTCCAAAATC 1783 ||||||||||||||||||||||||||||||||||||||||||| || | |||||||| || Sbjct 1754 TTTGTATGTAGATTGTTGTAGCTCTTTTGAACTATGCTTTAAACCCATCTCTCCAAATTC 1813 Query 1784 ACTGTGTCAAATGTTTTATGGAGG-TCTTGGTTGATAAGCTTACTGAAGTTATGATTGTT 1842 || ||||||| |||| |||| || | ||||| |||||||||| |||||||||||||||| Sbjct 1814 ACCATGTCAAAAGTTTGATGG-GGCTTTTGGTGGATAAGCTTAATGAAGTTATGATTGTT 1872 Query 1843 ATATCCAATGTAATATATAAACAAAAGCCATTGCACAACAA 1883 ||||||||||||||||||||||| |||||||| |||||||| Sbjct 1873 ATATCCAATGTAATATATAAACAGAAGCCATTACACAACAA 1913 Score = 568 bits (307), Expect = 7e-161 Identities = 370/399 (93%), Gaps = 10/399 (3%) Strand=Plus/Plus Query 2 GAGTTTCTCTCTGCCTTTAAACGTTTCATTGAAAACTATAAGAAAAAGCGAAGACTTCGG 61 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1 GAGTTTCTCTCTGCCTTTAAACGTTTGTTTGAAAACTATAAGAAACAGCGAAGACTTCGG 60 Query 62 ATCCTTTCTT-TCTCAATTTGTAACAAGAGAGAGAGGTTCAGGTTCGTTTTGGTGGTGAC 120 ||||||| || ||||||||||||| |||||||||||||||||||||| |||||||| ||| Sbjct 61 ATCCTTTTTTCTCTCAATTTGTAAGAAGAGAGAGAGGTTCAGGTTCG-TTTGGTGGAGAC 119 Query 121 CACTCC-TTTATTCACCTACGGTGAGATCGGCGGCGGAGTCTAGACGACGGCGATAACGC 179 |||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 120 CACTCCTTTTATTCACCTACGGTGAGATCGGCGGCGGAGTC-AGAAGACGGCGATAACGC 178 Query 180 CGGTGACCGACGGAATCATGTTAAGATA---GTCACTGGCGAATTCGTTCTTCTTCCCCG 236 ||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| |||| Sbjct 179 CGGTGACGGACGGAATCATGTCAAGATAGTCGTCACTTGCGAATTCGTTCTTCTT-CCCG 237 Query 237 GAGACGACAAGCATCGAAGAATCTGTTTAGAGACAGCTATGCTTGTCTCTGTTTCTGCGT 296 |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 238 GAGACGACGAGCATCGAAGAATCTGTCAAGAAACAGCTATGCTTGTCTCTGTTTCTGCGT 297 Query 297 TTTCTCTTTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCTGCCGCCGATCACATCTTC 356 ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| Sbjct 298 TTTCTCTCTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCCGCCGCTGATCTCATCTTC 357 Query 357 CAGTTTCCAGAGATT-CTAAAGCTTTTGTCTTTTGATCC 394 ||||||||||||||| | |||| |||||||||||||||| Sbjct 358 CAGTTTCCAGAGATTTC-AAAGTTTTTGTCTTTTGATCC 395 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71381119130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5