BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18280.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480735 jgi|Araly1|480735|fgenesh2_kg.3__3436__AT2G18280.2 2209 0.0
> Ahg480735 jgi|Araly1|480735|fgenesh2_kg.3__3436__AT2G18280.2
Length=1960
Score = 2209 bits (1196), Expect = 0.0
Identities = 1388/1481 (94%), Gaps = 11/1481 (1%)
Strand=Plus/Plus
Query 407 ATTG-AGCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATCCT 465
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATTGCAGTTATTGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATCCT 499
Query 466 TCGTGATCTGAAGGAAGTGAGGGATGGACTTGGAGGCATCTCCAAGAGAAGCTGGTCAAA 525
||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 500 TCGTGATTTGAAGGAAGTGAGAGATGGACTTGGAGGCATCTCCAAGCGAAGCTGGTCAAA 559
Query 526 GTCGTCTCACATTGCTCCTGATCAAACAACTCCACCACTGGATAACATACCACAGAGCCC 585
|||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||
Sbjct 560 GTCGTCTCACATTGCTCCTGATCAAACAACTCCACCACCGGAAAACATCCCGCAGAGCCC 619
Query 586 ATGGGCTTCTTTGCCGCCTGAGTTGCTTCATGACATTATCTGGAGGGTTGAAGAGAGTGA 645
||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 620 ATGGGCTTCGTTACCACCTGAGTTGCTTCATGACATTATCCGGAGGGTTGAAGAGAGTGA 679
Query 646 GACAGCTTGGCCCGCTCGAGCTGCCGTTGTCTCTTGTGCTTCAGTATGTAAATCATGGAG 705
||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 680 GACTGCTTGGCCCGCTCGAGCTGCTGTTGTCTCTTGTGCTTCTGTCTGTAAATCATGGAG 739
Query 706 AGGAATCACTATGGAGATTGTGAGGATCCCTGAGCAGTGTGGGAAGCTCACTTTTCCAAT 765
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 740 AGGAATCACTATGGAGATTGTGAGGATCCCTGAGCTGTGTGGGAAGCTCACTTTTCCAAT 799
Query 766 CTCATTGAAACAGCCGGGGCCTCGAGACTCTCCAATTCAATGTTTTATTAAGAGGAACAG 825
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 800 CTCATTAAAACAGCCGGGGCCGCGAGACTCTCCAATTCAATGCTTTATTAAGAGGAACAG 859
Query 826 AGCAACAGCTACATACATTCTCTATTATGGTTTGATGCCTTCGGAGACTGAGAACGACAA 885
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 860 AGCAACAGCTACATACATTCTCTATTATGGTTTGATGCCTTCTGAGACAGAGAACGACAA 919
Query 886 ACTGTTGTTAGCAGCAAGAAGGATTAGAAGAGCGACATGCACAGACTTTATAATCTCCCT 945
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 920 ACTGTTGTTAGCAGCAAGAAGGATTAGAAGAGCGACGTGCACGGACTTTATAATCTCGCT 979
Query 946 ATCTGC-AAAGAACTTCTCACGGAGCAGCAGTACTTATGTTGGCAAATTAAGGTCTGGTT 1004
||| || ||| |||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 980 ATCGGCGAAA-AACTTCTCACGGAGCAGCAGCACATATGTTGGCAAACTAAGGTCTGGTT 1038
Query 1005 TTCTGGGAACCAAGTTCACAATATATGACAACCAAACAGCATCATCCACAGCACAAGCCC 1064
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1039 TTCTGGGAACCAAGTTCACAATATATGACAACCAAACAGCATCATCCACAACACAAGGCC 1098
Query 1065 AACCTAACCGAAGACTCCACCCGAAACAAGCGGCTCCTAAACTACCTACGAATAGCTCTA 1124
|||||||||||||||| ||||| || |||||||| || ||| ||||| | ||||||||||
Sbjct 1099 AACCTAACCGAAGACTTCACCCCAAGCAAGCGGCCCCAAAAGTACCTGCTAATAGCTCTA 1158
Query 1125 CCGTAGGAAACATAACCTACGAGCTCAATGTTCTTCGCACAAGGGGACCTAGAAGAATGC 1184
| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CTGTAGGAAATGTAACCTATGAGCTCAATGTTCTTCGCACAAGGGGACCTAGAAGAATGC 1218
Query 1185 ACTGCGCTATGGATTCTATACCCCTCTCTTCTGTTATTGCTGAACCGTCAGTAGTTCAAG 1244
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1219 ATTGCGCTATGGATTCTATACCCCTCTCTTCTGTTATTGCTGAACCATCAGTAGTTCAAG 1278
Query 1245 GCATAGAAGAGGAAGTCTCTTCCTCTCCTTCACCAAAAGGAGAAACCATCACAACAGACA 1304
|| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1279 GCCTAGAGGAGGAAGTCTCTTCCTCGCCTTCACCAAAAGGAGAAACCAGCACAACAGACA 1338
Query 1305 AAGAGATTCCTGATAATT-CTCCAAGCTTAAGGGACCAACCGCTAGTTCTCAAAAACAAA 1363
||||| | |||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1339 AAGAGGTACCTGAT-ATTACTCCAAGCTTAAGGGACCAGCCGCTAGTTCTCAAAAACAAA 1397
Query 1364 TCCCCAAGATGGCATGAGCAGTTGCAGTGCTGGTGCCTCAACTTCAAGGGAAGAGTGACT 1423
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1398 TCCCCAAGATGGCACGAGCAATTGCAGTGTTGGTGCCTCAACTTCAAGGGAAGAGTGACC 1457
Query 1424 GTGGCTTCAGTTAAGAATTTCCAGCTTGTTGCAGAGATTGACGCTTCTTTGGATGCGCCG 1483
||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1458 GTGGCTTCAGTCAAGAATTTCCAGCTTGTTGCAGACATTGACGCTGCTTTGGTTGCGCCG 1517
Query 1484 CCTGAAGAACATGAGAGGGTGATCTTACAGTTTGGCAAAATCGGTAAGGATATTTTCACC 1543
| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1518 CGTGAAGAACATGAGAGGGTGATCTTACAGTTTGGCAAAATAGGTAAGGACATTTTTACC 1577
Query 1544 ATGGATTATCGCTACCCTCTATCTGCTTTTCAAGCCTTTGCTATATGCATTAGCAGCTTT 1603
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1578 ATGGATTATCGCTACCCTCTCTCTGCTTTCCAAGCCTTTGCTATATGCATCAGCAGCTTT 1637
Query 1604 GACACCAAACCGGCATGTGAAGGGTAAACTTTAACCCACCGAGTTAAATCCATCTCTGCA 1663
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 1638 GACACCAAACCGGCATGTGAAGGGTAAA-GTTAA--C-CCGAGTTAAATCCATCTCTGCA 1693
Query 1664 AATCATCATAGAAGGCTTTTCTTATCTTTAGGTTTCAATGTATCAATCCACGAAAAGCTC 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 AATCATCATAGAAGGCTTTTCTTATCTTTAGGTTTCAATGTATCAATCCACGAAAAGCTC 1753
Query 1724 TTTGTATGTAGATTGTTGTAGCTCTTTTGAACTATGCTTTAAATCCGTATCTCCAAAATC 1783
||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||
Sbjct 1754 TTTGTATGTAGATTGTTGTAGCTCTTTTGAACTATGCTTTAAACCCATCTCTCCAAATTC 1813
Query 1784 ACTGTGTCAAATGTTTTATGGAGG-TCTTGGTTGATAAGCTTACTGAAGTTATGATTGTT 1842
|| ||||||| |||| |||| || | ||||| |||||||||| ||||||||||||||||
Sbjct 1814 ACCATGTCAAAAGTTTGATGG-GGCTTTTGGTGGATAAGCTTAATGAAGTTATGATTGTT 1872
Query 1843 ATATCCAATGTAATATATAAACAAAAGCCATTGCACAACAA 1883
||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1873 ATATCCAATGTAATATATAAACAGAAGCCATTACACAACAA 1913
Score = 568 bits (307), Expect = 7e-161
Identities = 370/399 (93%), Gaps = 10/399 (3%)
Strand=Plus/Plus
Query 2 GAGTTTCTCTCTGCCTTTAAACGTTTCATTGAAAACTATAAGAAAAAGCGAAGACTTCGG 61
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 GAGTTTCTCTCTGCCTTTAAACGTTTGTTTGAAAACTATAAGAAACAGCGAAGACTTCGG 60
Query 62 ATCCTTTCTT-TCTCAATTTGTAACAAGAGAGAGAGGTTCAGGTTCGTTTTGGTGGTGAC 120
||||||| || ||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 61 ATCCTTTTTTCTCTCAATTTGTAAGAAGAGAGAGAGGTTCAGGTTCG-TTTGGTGGAGAC 119
Query 121 CACTCC-TTTATTCACCTACGGTGAGATCGGCGGCGGAGTCTAGACGACGGCGATAACGC 179
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 120 CACTCCTTTTATTCACCTACGGTGAGATCGGCGGCGGAGTC-AGAAGACGGCGATAACGC 178
Query 180 CGGTGACCGACGGAATCATGTTAAGATA---GTCACTGGCGAATTCGTTCTTCTTCCCCG 236
||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| ||||
Sbjct 179 CGGTGACGGACGGAATCATGTCAAGATAGTCGTCACTTGCGAATTCGTTCTTCTT-CCCG 237
Query 237 GAGACGACAAGCATCGAAGAATCTGTTTAGAGACAGCTATGCTTGTCTCTGTTTCTGCGT 296
|||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 238 GAGACGACGAGCATCGAAGAATCTGTCAAGAAACAGCTATGCTTGTCTCTGTTTCTGCGT 297
Query 297 TTTCTCTTTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCTGCCGCCGATCACATCTTC 356
||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 298 TTTCTCTCTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCCGCCGCTGATCTCATCTTC 357
Query 357 CAGTTTCCAGAGATT-CTAAAGCTTTTGTCTTTTGATCC 394
||||||||||||||| | |||| ||||||||||||||||
Sbjct 358 CAGTTTCCAGAGATTTC-AAAGTTTTTGTCTTTTGATCC 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5