BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18290.1
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931722 jgi|Araly1|931722|scaffold_304179.1 1038 0.0
Ahg480735 jgi|Araly1|480735|fgenesh2_kg.3__3436__AT2G18280.2 163 2e-39
> Ahg931722 jgi|Araly1|931722|scaffold_304179.1
Length=620
Score = 1038 bits (562), Expect = 0.0
Identities = 599/617 (97%), Gaps = 2/617 (0%)
Strand=Plus/Plus
Query 218 ATCTCGGAGAAGAGATATGGCGACAGAGTCATCGGAATCGGAAGAAGAAGGAAAGATTAG 277
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 ATCTCGGAGAGGAGATATGGCGACAGAGTCATCGGAATCGGAAGAAGAAGGAAAGATTAG 64
Query 278 TGGAGGAAACTATAAGCTAATCATAGACGACGATCTAAGAGAGATGGGTAAAAACGCAGC 337
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AGGAGGAAACGATAAGCTAATCATAGACGACGATCTAAGAGAGATGGGTAAAAACGCAGC 124
Query 338 TTGGAGCGTTAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCT 397
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TTGGAGTGTGAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCT 184
Query 398 CGAGACTTATTGGCAATCAGATGGGTTACAACCACATTTGATTAACATTCAATTCCAGAA 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CGAGACTTATTGGCAATCAGATGGGTTACAACCACATTTGATTAACATTCAATTCCAGAA 244
Query 458 GAAAGTGAAACTGCAGTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATAC 517
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 245 GAAAGTGAAATTGCAGTTAGTGGTTCTCTACGTTGACTTTAAGCTTGATGAGAGCTATAC 304
Query 518 ACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGGAGATTAAAAG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 ACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGGAGATTAAAAG 364
Query 578 TGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCTTTGTCTGGAACCGATCCACG 637
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 365 TGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCTCTGTCTGGAACTGATCCACG 424
Query 638 GGAAACTTTTGTCAATACATTTATGTTACAAATAGCCATTTTGTCAAATCACCTCAACGG 697
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 425 GGAAACTTTTGTCAATACATTTATGTTACAAATAGCCATTTTGTCGAATCACCTCAACGG 484
Query 698 GAGAGATACTCATATCCGCCAGATCAAAGTTTACGGCCCTAGACCAAATCCTATTCCGCA 757
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 485 GAGAGATACTCATATCCGCCAGATCAAAGTTTATGGCCCTAGACCAAATCCTATTCCGCA 544
Query 758 CCAACCTTTTCAGTTTACATCGATGGAGTTTCTCACTTATTCAACACTGAGATGAGAA-A 816
|||||| |||||||||||||| |||||||||||||||||||| || ||||||||| || |
Sbjct 545 CCAACCGTTTCAGTTTACATCAATGGAGTTTCTCACTTATTCGACGCTGAGATGA-AAGA 603
Query 817 TTTGAGCAGGAGAAGTT 833
|||||||||||||||||
Sbjct 604 TTTGAGCAGGAGAAGTT 620
> Ahg480735 jgi|Araly1|480735|fgenesh2_kg.3__3436__AT2G18280.2
Length=1960
Score = 163 bits (88), Expect = 2e-39
Identities = 146/172 (85%), Gaps = 11/172 (6%)
Strand=Plus/Minus
Query 867 GATACCACATGAAGAGTCTATAATCAGATTAG-T-TA---T----TGTTGTTGTGCAATG 917
||||||||| |||||||||||||||||||||| | || | | |||||||| ||||
Sbjct 1960 GATACCACAGGAAGAGTCTATAATCAGATTAGTTATAGTTTCACATATTGTTGTGTAATG 1901
Query 918 GCTTTTGTTTATATATTACATTGGATATAACAATCATAACTTCAGTAAGCTTATCAACCA 977
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1900 GCTTCTGTTTATATATTACATTGGATATAACAATCATAACTTCATTAAGCTTATCCACCA 1841
Query 978 AGA-CCTCCATAAAACATTTGACACAGTGATTTTGGAGATACGGATTTAAAG 1028
| | || |||| |||| ||||||| |||| |||||||| | || |||||||
Sbjct 1840 AAAGCC-CCATCAAACTTTTGACATGGTGAATTTGGAGAGATGGGTTTAAAG 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38237285751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5