BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18330.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480742 jgi|Araly1|480742|fgenesh2_kg.3__3443__AT2G18330.1 3249 0.0
Ahg490979 jgi|Araly1|490979|fgenesh2_kg.7__412__AT4G36580.1 824 0.0
> Ahg480742 jgi|Araly1|480742|fgenesh2_kg.3__3443__AT2G18330.1
Length=2073
Score = 3249 bits (1759), Expect = 0.0
Identities = 1995/2104 (95%), Gaps = 36/2104 (2%)
Strand=Plus/Plus
Query 15 TCATAACCTAGCCACCGT-GGGTTTATGCTCGGGCCTACCGGAGAGACATTTCCGACGAC 73
|||||||||||||||||| ||||||||||||| ||| ||||||| || |||||||||||
Sbjct 1 TCATAACCTAGCCACCGTGGGGTTTATGCTCGTACCTGCCGGAGAAACTTTTCCGACGAC 60
Query 74 TGTGCACAATCATTTCTATTAACCTTGAGAGTACCATTTTCTCATTCCGAAATGTTTGAA 133
| | ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TATCCACAACCATTTCCGCAAACCTTGAGAGCACCATTTTCTCATTCCGAAATGTTTGAA 120
Query 134 TTGTAAAAGGACTTTTGTTTCTTGCTTGGGGTTTAGGAGGCTGCTTTTTAGTCGTATTTC 193
|||||||||||||| |||||||||| | || ||||||||| |||||
Sbjct 121 TTGTAAAAGGACTTCTGTTTCTTGC--------T-------TG--TTTTAGTCGCATTTC 163
Query 194 AATGGCTGCTTCTAGATTATGTTCCGCGGCGGCGATAGCTGCTGCGTTCACTTCAATGTC 253
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 164 AATGGCTGCTTCTAGATTATGTTCGGCGGCGGCGATAGCTGCTGCGTTCACTTCAATGTC 223
Query 254 GATGTCACAGAACCGCGCTTACGCTGACTCGCGATTTCGCTTTCCTTTCTTCTCTTCTTC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GATGTCACAGAACCGCGCTTACGCTGACTCGCGATTTCGCTTTCCTTTCTTCTCTTCTTC 283
Query 314 ACCTCCGGCAGAAGAATCTCCAACCGATCATAAGTCTTCTTCGAATTCTAAATCGGAGAC 373
|||||||||||||||||||||||||||||| ||| ||||| | || ||| |||||
Sbjct 284 ACCTCCGGCAGAAGAATCTCCAACCGATCAAAAG---TCTTC--A-TC-GAAT--GAGAC 334
Query 374 TAAACCTGACTCCGATGAGCCTAAAGGATCTGGTTTCGATCCTGAGTCATTGGAAAGAGG 433
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 335 TAAACCTGACTCCGATGAACCTAAAGGATCTGGTTTCGATCCTGAGTCTTTGGAAAGAGG 394
Query 434 TGCTAAAGCTCTTCGTGAAATCAATAGCTCTCCTCATTCCAAACAGGTGTTTGATCTAAT 493
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 395 TGCTAAAGCTCTTCGTGAAATCAACAGCTCTCCTCATTCGAAACAGGTGTTTGATCTAAT 454
Query 494 GCGAAAGCAGGAGAAGACTCGATTAGCTGAATTAGCGGCTGAGAAAGAACATAATGAAGC 553
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 455 GCGAAAGCAGGAGAAAACTCGATTAGCTGAATTAGCTGCTGAGAAAGAACATAATGAAGC 514
Query 554 TATTCAAGCT-AGCAAGGACATTGAAAGACAGCGGAAATTGGCAGAGGATCAGAGAAATT 612
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 515 TATTCAAGCTCA-CAAGGACATTGAAAGACAGCGGAAATTGGCTGAGGATCAGAGAAATT 573
Query 613 TAGTGCAGCAACAGGCCCAAGCGAAAGCGCAAAAT-CTTA-GATATGAGGATGAGTTGGC 670
|||||||||||||||| ||||||||||||| |||| | || |||||||||||||||||||
Sbjct 574 TAGTGCAGCAACAGGCACAAGCGAAAGCGC-AAATGC-TACGATATGAGGATGAGTTGGC 631
Query 671 CAGGAAGAGAATGCAGACAGATAATGAAGCTCAGAGACGGCATAATGCTGAATTGGTTTC 730
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AAGGAAGAGAATGCAGACAGATAATGAAGCTCAGAGACGGCATAATGCTGAATTGGTTTC 691
Query 731 GATGCAAGAAGCA-TCTTCTATACGGAAAGAGAAAGCAAGAATTGCCACGGAAGAACAGA 789
|||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 692 GATGCAAG-AGGAGTCTTCTATACGGAAAGAGAAAGCAAGAATTGCCACGGAACAACAGA 750
Query 790 TTCAAGCACAGCAGCGCGAGACTGAGAAAGAGAGAGCGGAACTTGAGCGAGAAACAATTC 849
||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 751 TTCAAGCACAGCAGCGCCAGACTGAGAAAGAGAGAGCTGAACTTGAGAGAGAAACAATTC 810
Query 850 GCGTGAAAGCTATGGCTGAGGCTGAAGGCCGAGCTCATGAAGCTAAACTCACTGAGGAGC 909
|||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 811 GCGTTAAGGCCATGGCTGAGGCTGAAGGCCGAGCTCATGAAGCTAAACTTACTGAGGAGC 870
Query 910 AGAATAGAAGAATGCTTCTAGATAAGATAAATGGTGAAAGGGAGAAATGGCTTGCAGCAA 969
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 871 AGAATAGAAGAATGCTTCTGGATAAGATTAATGGTGAAAGGGAGAAATGGCTTGCAGCAA 930
Query 970 TCAACACGACTTTCAGTCACATTGAAGGAGGAGTAAGGACCTTATTAACTGATCGAAGTA 1029
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 931 TCAACACAACTTTCAGTCATATTGAAGGAGGAGTAAGGACCTTATTAACTGATCGAAGTA 990
Query 1030 AATTGATTATGACTGTTGGAGGAGTTACGGCATTAGCCGCTGGGGTTTACACAACTCGAG 1089
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 991 AATTGATTATGACTGTTGGAGGAATTACGGCATTAGCTGCTGGGGTTTACACAACTCGAG 1050
Query 1090 AAGGTGCTAGGGTTACCTGGGGTTATATCAATAGAATTCTTGGGCAGCCATCACTGATCA 1149
| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1051 AGGGTGCTAGGGTTACCTGGGGTTATATTAACAGAATTCTTGGGCAGCCATCACTGATCA 1110
Query 1150 GAGAATCTTCCATGGGCCGATTCCCATGGGCAGGCTCAGTGTCTCAGTTTAAGAACAAAC 1209
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGAATCGTCCATGGGTAGATTCCCATGGGCAGGCTCAGTGTCTCAGTTTAAGAACAAAC 1170
Query 1210 TTAGCACAGCTGCAGGGGCAGCAGCATCTGCAGAAGGAGAAAAGCCTCTTGAAAATGTAA 1269
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1171 TTAGCACAGCTGCAGGGGCCGCAGCATCTGCAGAAGGAGAAAAGCCCCTTGAAAATGTAA 1230
Query 1270 TTCTCCATCGTTCTTTGAAGACGAGAATTGAGCGTCTTGCAAGAGCCACAGCAAATACCA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TTCTCCATCGTTCTTTGAAGACGAGAATTGAGCGTCTTGCAAGAGCCACAGCAAATACCA 1290
Query 1330 AGTCACATAAAGCACCATTCCGAAACATGATGTTTTATGGGCCTCCAGGTACCGGAAAAA 1389
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1291 AGTCCCATAAAGCACCATTCCGAAACATGATGTTTTATGGGCCTCCTGGTACTGGAAAAA 1350
Query 1390 CTATGGTGGCGAGGGAGATTGCTCGGAAGTCGGGTCTTGATTATGCTATGATGACAGGAG 1449
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1351 CTTTGGTGGCGAGGGAGATTGCTCGGAAATCGGGTCTTGATTATGCTATGATGACAGGAG 1410
Query 1450 GAGATGTTGCTCCTCTTGGTGCACAGGCTGTTACAAAGATCCATGAAATATTTGATTGGG 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 GAGATGTTGCTCCTCTTGGTGCACAGGCTGTTACAAAGATCCATGAAATATTTGATTGGG 1470
Query 1510 CTAAGAAATCAAACAAAGGGTTACTGCTTTTCATCGATGAAGCTGATGCTTTCCTATGCG 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 CTAAGAAATCAAACAAAGGGTTACTGCTTTTCATCGATGAAGCTGATGCTTTCCTATGCG 1530
Query 1570 AACGTAACAGCACTTACATGAGTGAGGCTCAGCGCAGCGCTCTGAACGCGTTGCTCTTTC 1629
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 AACGTAACAGCACGTACATGAGTGAGGCTCAGCGCAGCGCTCTGAACGCGTTGCTCTTTC 1590
Query 1630 GAACCGGTGATCAATCGCGGGACATAGTCCTTGTCCTGGCTACAAACAGACCTGGAGATC 1689
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1591 GAACCGGTGATCAATCACGGGACATAGTTCTTGTCCTGGCTACAAACAGACCCGGAGATC 1650
Query 1690 TCGACAGTGCAGTCACTGACAGGATCGACGAAGTTATCGAGTTTCCTCTCCCTGGTGAAG 1749
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1651 TGGACAGTGCAGTCACTGACAGGATCGACGAAGTAATCGAGTTTCCTCTCCCTGGTGAAG 1710
Query 1750 AAGAACGCTTCAAGCTCCTCAAGCTCTATCTCAACAAGTACCTAATGGGTGACGACAAGA 1809
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1711 AAGAACGCTTCAAGCTCCTCAAGCTCTATCTCAACAAGTACCTAATGGGTGAAGACAAGA 1770
Query 1810 AAGGTGAGAAAGACTCAAACCTTAAATGGAGCAACTTGTTCAAGAAGAAGAAGTCACAGA 1869
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 AAGGTGAGAAAAACTCGAACCTTAAATGGAGCAACTTGTTCAAGAAGAAGAAGTCACAGA 1830
Query 1870 AGATAACCATTGAAGGAGACCTAACCGACCAAGTGATTAAAGAAGCTGCAAAAAAGACAG 1929
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1831 AGATAACCATTGAAGGAGACCTAACCGACCAAGTGATCAAAGAAGCTGCAAAAAAGACAG 1890
Query 1930 AAGGCTTTTCTGGTCGTGAAATCGCTAAGCTTGTCGCCGGTGTTCAAGCTGCGGTATATG 1989
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1891 AAGGCTTCTCTGGTCGTGAAATCGCTAAGCTTGTCGCCGGTGTTCAAGCTGCGGTATACG 1950
Query 1990 GACGACAGGATTGTGTCTTGGATTCCCAACTTTTTGAAGAAATTGTGGATTATAAGATCG 2049
|||||| |||||| |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 1951 GACGACCGGATTGCGTCTTGGATTCCCAGCTTTTTGAAGAGATTGTGGATTATAAAATCG 2010
Query 2050 AAGAACATCACCAGAGAATCAGACTTGCGACTGAAGGTGGCCAATCGTTTCCGTAGATCT 2109
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 2011 AAGAACATCACCAGAGAATCAGACTTGCGACTGAAGGTGGCCAATCGTTTGCGTAGAT-T 2069
Query 2110 TTTT 2113
||||
Sbjct 2070 TTTT 2073
> Ahg490979 jgi|Araly1|490979|fgenesh2_kg.7__412__AT4G36580.1
Length=1869
Score = 824 bits (446), Expect = 0.0
Identities = 759/907 (84%), Gaps = 34/907 (4%)
Strand=Plus/Plus
Query 195 ATGGCTGCTTCTAGATTATGTTCCGCGGCGGCGATAGCTGCTGCGTTCACTTCAATGTCG 254
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 ATGGCTGCTTCTAGATTGTGTTCCGCGGCGGCGATAGCTGCTGCGTTCACTTCAATGTCG 66
Query 255 ATGTCACAGAACCGCGCTTACGCTGACTCGCGATTTCGCTTTCCTTTCT-TCTCTTCTTC 313
|||||||||||||| || ||||| || || ||||| || |||||||||| | ||||||||
Sbjct 67 ATGTCACAGAACCGTGCGTACGCCGATTCTCGATTCCGGTTTCCTTTCTAT-TCTTCTTC 125
Query 314 ACCTCCGGCAGA-AGAATCTCCAACCGA-TCATAAGTCTTCTTCGAATTCTAAATCGGAG 371
||||| | | ||| ||||| | || ||| | ||||||||||| |||| | ||
Sbjct 126 TCCTCCTCC-GTCAGATTCTCCGGC-GAATCA-A--TCTTCTTCGAACTCTAG-TA--AG 177
Query 372 ACTAAACCTGACTCCGATGAGCCTAAAGGATCTGGTTTCGATCCTGAGTCA-TTGGAAAG 430
||||||| || | ||||||||||||||||| ||||| ||||||||||| ||| | ||
Sbjct 178 TCTAAACCAGAGGCTGATGAGCCTAAAGGATCGGGTTTTGATCCTGAGTCCCTTG-AGAG 236
Query 431 AGGTGCTAAAGCTCTTCGTGAAATCAATAGCTCTCCTCATTCCAAACAGGTGTTTGATCT 490
|| ||| ||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct 237 AGCTGCAAAAGCTCTTAGAGATATCAATAGCTCTCCCCATTCCAAACAGGTGTTTGATCT 296
Query 491 AATGCGAAAGCAGGAGAAGACTCGATTAGCTGAATTAGCGGCTGAGAAAGAACA-TAATG 549
||| | ||||||||||| ||||| ||||||||||||||||| ||| || || |
Sbjct 297 CATGAGGAAGCAGGAGAAAACTCGGTTAGCTGAATTAGCGGCAGAGTCTTCTCAATAC-G 355
Query 550 AAGCTATTCAAGCTAGCA-AG-GACATTGAAAGACAGCGGAAATTGGCAGAGGATCAGAG 607
||||||||||||| | || || || ||||| ||||| | ||||||||| ||||| |||||
Sbjct 356 AAGCTATTCAAGC-A-CACAGAGATATTGAGAGACAACAGAAATTGGCTGAGGACCAGAG 413
Query 608 AAAT-TTAGTGCAG-CAACAGGCCCAAGCGAAAGCGCAAAATCTTAGATATGAGGATGAG 665
|||| || ||||| || ||||| ||| | |||||||||| ||| |||||||||||||
Sbjct 414 AAATCTTT-TGCAGACA-CAGGCGCAAACCAAAGCGCAAATTCTGCGATATGAGGATGAA 471
Query 666 TTGGCCAGGAAGAGA-ATGCAGACAGATAATGAAGCTCAGAGACGGCATAATGCTG-AAT 723
|| ||||| |||||| | |||||||||| ||||||||||||||| ||||||| || |||
Sbjct 472 TTAGCCAGAAAGAGACA-GCAGACAGATCATGAAGCTCAGAGACATCATAATG-TGGAAT 529
Query 724 TGGTTTCGATGCAAGAAGCATCTTCTAT-ACGGAAAGAGAAAGCAAGAATTGCCACGGAA 782
||||| ||||||||| || |||||||| | ||||||||| |||| ||| ||||| |||
Sbjct 530 TGGTTAAGATGCAAGAGGCGTCTTCTATCA-GGAAAGAGAGGGCAAAAATCGCCACAGAA 588
Query 783 GAACAGATTCAAGCACAGCAGCGCGAGACTGAGAAAGAGAGAGCGGAACTTGAGCGAGAA 842
|||||||| ||||| ||||| ||| | ||||||||||||||||| ||||||||||||||
Sbjct 589 GAACAGATCCAAGCTCAGCATCGCCAAACTGAGAAAGAGAGAGCTGAACTTGAGCGAGAG 648
Query 843 ACAATTCGCGTGAAAGCTATGGCTGAGGCTGAAGGCCGAGCTCATGAAGCTAAACTCACT 902
|| ||||| || || || |||||||| |||||||| || ||||||||||| ||||| |||
Sbjct 649 ACGATTCGTGTCAAGGCCATGGCTGAAGCTGAAGGTCGGGCTCATGAAGCCAAACTTACT 708
Query 903 GAGGAGCAGAATAGAAGAATGCTTCTAGATAAG-ATAAATGGTGAAAGGGAGAAATGGCT 961
|| ||||| || |||||| ||||||| || ||| || ||||||||||||||||| |||||
Sbjct 709 GAAGAGCAAAACAGAAGATTGCTTCTGGA-AAGGATTAATGGTGAAAGGGAGAAGTGGCT 767
Query 962 TGCAGCAATCAACACGACT-TTCAGTCACATTGAAGGAGGAGTAAGGACCTTATTAACTG 1020
||| ||||||||||| | | ||||||||||| ||||| ||| | |||||||||||||| |
Sbjct 768 TGCTGCAATCAACACCA-TGTTCAGTCACATCGAAGGGGGATTCAGGACCTTATTAACCG 826
Query 1021 ATCGAAGTAAATTGATTATGACTGTTGGAGGAGTTACGGCATTAGCCGCTGGGGTTTACA 1080
|||||| ||| ||||||||||||||||||||| ||| |||||||| || ||| |||| |
Sbjct 827 ATCGAAATAAGCTGATTATGACTGTTGGAGGAGCTACTGCATTAGCTGCAGGGATTTATA 886
Query 1081 CAACTCG 1087
|||||||
Sbjct 887 CAACTCG 893
Score = 817 bits (442), Expect = 0.0
Identities = 817/993 (82%), Gaps = 46/993 (5%)
Strand=Plus/Plus
Query 1112 TTATATCAA-TAGAATTCTTGGGCAGCCATCACTGA-TCAGAGAATCTTCCATGGGCCGA 1169
||||| ||| | | || ||||| || |||||||| | || |||||||||||||||| ||
Sbjct 882 TTATA-CAACTCGGATGCTTGGACAACCATCACTTATTC-GAGAATCTTCCATGGGTAGA 939
Query 1170 TTCCCATGGGCAGGCTCAGTGTCTCAGTTTAAGAACA-AACTTAGCACAGCTGCAGGGGC 1228
|| ||||||||||||||| ||||||| || ||||||| || | | ||| |||| ||
Sbjct 940 TTTCCATGGGCAGGCTCAATGTCTCAATTGAAGAACAGAA--T--CTCAGGTGCA---GC 992
Query 1229 AGCAGCATCT---GCAGAA-GGAGAAAAGCCTCTTGAAAATGTAATTCTCCAT-CGTTCT 1283
|||||||||| |||||| ||| ||||||| ||||| ||||||||||||||| | ||||
Sbjct 993 AGCAGCATCTGCAGCAGAAGGGA-AAAAGCCACTTGATAATGTAATTCTCCATAC-TTCT 1050
Query 1284 TTGAAGACGA-GAATTGAGCGTCTTGCAAGAGCCACAGCAAATACCAAGTCACATAAAGC 1342
||||||| | |||| |||| ||| || ||||| |||||||||||||| || ||| ||||
Sbjct 1051 TTGAAGA-AACGAATCGAGCATCTCGCTAGAGCTACAGCAAATACCAAATCCCATCAAGC 1109
Query 1343 ACCATTCCGAAACATGATGTTTTATGGGCCTCCAGGTACCGGAAAAACTATGGTGGCGAG 1402
||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| || ||
Sbjct 1110 ACCATTCCGCAACATGATGTTTTATGGACCTCCTGGTACCGGTAAAACTATGGTCGCAAG 1169
Query 1403 GGAGATTGCTCGGAAGTCGGGTCTTGATTATGCTATGATGACAGGAGGAGATGTTGCTCC 1462
||| || ||||| || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1170 GGAAATAGCTCGAAAATCGGGTCTGGATTATGCTATGATGACAGGTGGAGATGTTGCTCC 1229
Query 1463 TCTT-GG-TGCACAGGCTGTTAC-AAAGATCCATGAAATATTTGATTGGGCTAAGAAATC 1519
||| || | |||| |||||||| ||| |||||| | |||||||||||||| ||||||||
Sbjct 1230 -CTTGGGAT-CACAAGCTGTTACTAAA-ATCCATCAGATATTTGATTGGGCCAAGAAATC 1286
Query 1520 AAACAAAGGGTTACTGCTTTTCATCGATGAAGCTGATGCTTTCCTATGCGA-ACGTAACA 1578
|||||||| ||||| |||||||| |||||||| |||||||| |||||| | |||||||
Sbjct 1287 GAACAAAGGCTTACTTCTTTTCATTGATGAAGCCGATGCTTTTCTATGC-AGGCGTAACA 1345
Query 1579 GCACTTACATGAGTGAGGCTCAGCGCAGCGCTCTGAACGCGTTGCTCTTTCGAACCGGTG 1638
|||||||||||||||||||||| || || |||||||| || |||||||| ||||||||||
Sbjct 1346 GCACTTACATGAGTGAGGCTCAACGTAGTGCTCTGAATGCTTTGCTCTTCCGAACCGGTG 1405
Query 1639 ATCAATCGCGGGACATAGTCCTTGTCCTGGCTACAAACAGACCTGGAGATCTCGACAGTG 1698
||||||| |||||||| || |||||| | |||||||||||||||||||||||||| ||||
Sbjct 1406 ATCAATCTCGGGACATTGTTCTTGTCTTAGCTACAAACAGACCTGGAGATCTCGATAGTG 1465
Query 1699 CAGTCACTGACAGGATCGACGAAGTTATCGAGTTTCCTCTCCCTGGTGAAGAAGAACGCT 1758
| || || |||||||| || ||||| || ||||| || || || || ||||||||||| |
Sbjct 1466 CGGTTACAGACAGGATTGATGAAGTCATTGAGTTCCCACTTCCAGGGGAAGAAGAACGTT 1525
Query 1759 TCAAGCTCCTCAAGCTCTATCTCAACAAGTACCTAATG-GGTGACGACAAGAAAGGTGAG 1817
||||||| ||||| ||||||||||| || || |||| | || | ||||| || |
Sbjct 1526 TCAAGCTTCTCAATCTCTATCTCAATAAATATCTAAAGAGGGGT-GACAACAAC----A- 1579
Query 1818 AAAGACTCAAA-CCTTAAATGGAG-CAACTTGTTCAAGAAGAAGAAGTCACAGAAGATAA 1875
|| ||| |||| || |||||||| || ||||| |||||| | ||||||||||| |
Sbjct 1580 AA-GACACAAAACCG-AAATGGAGTCAT-TTGTTTAAGAAGCTG---TCACAGAAGATTA 1633
Query 1876 CCATTGAAGGAGACCTAACCGACCAAGTGATTAAAGAAGCTGCAAAAAAGACAGAAGGCT 1935
|| |||||| ||||||||| || |||||||| || ||||| || ||||| ||||| |
Sbjct 1634 CCGTTGAAGCAGACCTAACTGATAAAGTGATTTCTGAGGCTGCGAAGAAGACGGAAGGAT 1693
Query 1936 TTTCTGGTCGTGAAATCGCTAAGCTTGTCGCCGGTGTTCAAGCTGCG-GTATATGGACGA 1994
| ||||| |||||||| || |||||||| ||||| || ||||||| | || || ||||||
Sbjct 1694 TCTCTGGCCGTGAAATTGCAAAGCTTGTGGCCGGAGTACAAGCTG-GAGTGTACGGACGA 1752
Query 1995 CAGGATTGTGTCTTGGATTCCCAACTTTTTGAAGAAATTGTGGATTATAAGATCGAAGAA 2054
|||||||||| |||||||| || ||||| |||| ||||| || |||||| | ||||||
Sbjct 1753 GAGGATTGTGTATTGGATTCACAGCTTTTCAAAGAGATTGTTGAATATAAGGTTGAAGAA 1812
Query 2055 CATCACCAGAGAATCAGACTTGCGACTGAAGGT 2087
|||||||| || | || ||||| ||||||||
Sbjct 1813 CATCACCAAAGGCTTAGGCTTGCTTCTGAAGGT 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5