BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18340.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480743 jgi|Araly1|480743|fgenesh2_kg.3__3444__AT2G18340.1 1107 0.0
> Ahg480743 jgi|Araly1|480743|fgenesh2_kg.3__3444__AT2G18340.1
Length=1434
Score = 1107 bits (599), Expect = 0.0
Identities = 853/976 (87%), Gaps = 16/976 (2%)
Strand=Plus/Plus
Query 502 ATGCAAAGGACATGGCTTATGAGAAAGCGGGCCATGCCAAA-GATTTCGCCTATGATAAG 560
|||| ||||| | |||||||| || || || ||| |||| || | ||||| || ||
Sbjct 462 ATGCGAAGGATTTCGCTTATGATAAGGCTGGTGATG-CAAAGGACATGGCCTACGAAAAT 520
Query 561 GCAGGCAATGCTAAGGACATGGCCTACGAGACA-GC-GGGATATGCAAAGGATTTCGCCT 618
|| ||| |||||||||| | ||||| || | | || || | |||||||||| | ||||
Sbjct 521 GCGGGCTATGCTAAGGATTTCGCCTATGATA-AGGCAGGCA-ATGCAAAGGACATGGCCT 578
Query 619 ATGATAAGGGAGGCTACGCGAAGGATGTTGCCTATGATAAGGCAGGCAATGCAAAGGATA 678
|||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |
Sbjct 579 ATGATAAGGGAGGCTACGCGAAGGATTTTGCCTATGATAAGGCTGGTGATGCAAAGGACA 638
Query 679 TGGCATATGAGAAGGCGGGAAATGCGAAGGACATGGCCTACGAGAAGG-CGGAACA-CAT 736
|||| |||||||||||| |||| ||||||||||| || ||||||| | | | | ||
Sbjct 639 TGGCCTATGAGAAGGCGCCCTATGCAAAGGACATGGCATATGAGAAGGCCAGCATAGCA- 697
Query 737 AAAGGATTTCACATATGATAAAGTGGGATCTGCTTACGGAAGTGCACAG-AGTATGATGG 795
||| || | | || || |||| ||| |||||| |||||||| ||| | | ||||||
Sbjct 698 AAA-GACATGGCCTACGAAAAAGCGGGGGATGCTTATGGAAGTGCGCAGAAAT-TGATGG 755
Query 796 ACTCTGGTTATGATAAGGCCGGTGATGCCAAGGACATGGCCTATGAGAAGGCAGGCATA- 854
|||| || |||||||||| ||||||||| |||||||| |||||||| ||||| ||| ||
Sbjct 756 ACTCCGGCTATGATAAGGTCGGTGATGCTAAGGACATTGCCTATGAAAAGGCTGGC-TAT 814
Query 855 GTAAAAGACATGGCATATGATAAAGCGGGGGATGCAAAGGACGTG-GCTTATGAGAAGGC 913
||||| |||||||| || || ||| | || |||| ||||||| | || |||||||||||
Sbjct 815 GTAAAGGACATGGCCTACGAGAAAACAGGCAATGCCAAGGACG-GCGCCTATGAGAAGGC 873
Query 914 TGGCATTGCCAAGGATATGGCCTATGATAAGGCGGGCAATGCCAAGGACATGGCCTATGA 973
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 874 GGGCATTGCCAAGGGCATGGCCTATGATAAGGCAGGCAATGCCAAGGACATGGCATATGA 933
Query 974 TAAGGTGGGATCTGCTTATGGCAGTGCGCAGAAGGCAAAGGATTCTGGTTATGAGAAAGC 1033
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 934 TAAGGTGGGATCTGCTTATGGCATTGCGCAGAAGGCAAAGGATTCTAGTTATGAGAAAGC 993
Query 1034 TGGTGAGGCCAAAGACTACGCCTACAAGAAGGCTGGCAATGCAAAAGACATAGCTTACGA 1093
||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct 994 TGGTGAGGCCAAAGACTTCGCCTACAAGAAGGCTGGCAATGCGAAAGACTTAGCTTACGA 1053
Query 1094 AAAGGCCCAAGATGCAAAAGACTTTGCATATGACAAGGCGGGTTACGGATACGACAAGGC 1153
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1054 AAAAGCGCAAGATGCAAAAGACTTTGCATATGACAAGGCGGGTTACGGATACGACAAGAC 1113
Query 1154 CGGTGATGTGATTAGGATGGCAACGGATAAGAGCGGTGAAGCCTATGAAGGAGCCAAAGA 1213
||||||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||
Sbjct 1114 CGGTGATGTGATTAGGATGGCTACAGACAAGAGTGGTGAAGCTTATGAAGGAGCTAAAGA 1173
Query 1214 AAAGTCAAAGAGTGCCAAAGACACGGCAGGAGAAGCAATGGATGATTCTATTGACTACAT 1273
|||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||
Sbjct 1174 GAAGTCAAAGAGTGCCAAAGACATGGCTGGAGTAGCAATGGATGATTCTATTAACTACAT 1233
Query 1274 GAAAGACAAATCACACAATGCCAAAGATGGAGCAACTAGAGGATTTGAAGAAGCCATGGA 1333
||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||
Sbjct 1234 GAAAGACAAATCACACAATGCCAAAGATGAAGCAGCTAGGGGATTCGAAGAAGCCATGGA 1293
Query 1334 AAAAGTCGGCGAAAAGTACGGTGTAGCCAAAGAATCCACAAAATATGCTTATGAAACCGC 1393
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 1294 AAAAGTCGGCGAAAAGTACGGTACAGCCAAAGAATCCACAAAATACGCTTACGAAACCGC 1353
Query 1394 AAAGAAAAAGGCTTCTCAAGTTGCGGGAGAAATAAGAGACCGTTATGCTGAGCTCTAAAA 1453
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1354 AAAGAAAAAGGCTTCTCAAGTTGCGGGAGAAATAAAAGACCGTTATGCTGAGCTCTAAAA 1413
Query 1454 TCAATTTGTTATACAA 1469
|||||||||||||||
Sbjct 1414 CCAATTTGTTATACAA 1429
Score = 896 bits (485), Expect = 0.0
Identities = 809/961 (84%), Gaps = 39/961 (4%)
Strand=Plus/Plus
Query 8 TTTAAAAAGGGACAAAACTAAATTGGTCATAGCAAATTCAAAGAAGTTTGATTCGGAATC 67
||||||||||||||||| |||||||||||| |||||||||| ||||| |||||| ||||
Sbjct 2 TTTAAAAAGGGACAAAAATAAATTGGTCAT--CAAATTCAAACAAGTTCGATTCGTAATC 59
Query 68 ACTGGTT-AAAGAGATGATGGAGAGAAGAAGAACGGCATTGGTATTGTTTGTGGTAGTGG 126
|| |||| ||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 60 ACCGGTTAAAAGAGATGATGGAGAGAAGAAGAACGGCATTGGTATTGCTCGTTGTAGTGG 119
Query 127 TGGTGTTGACGTGGCAAGAGGGTGTATTGGGGAAATGGTTAGAGTCGACGGCGAAGGAAA 186
||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 120 TGGTGATGACGTGGCAGGAGGGTGTTTTGGGGAAATGGGCAGAGTCGACGGCGAAGGAAA 179
Query 187 AGACCGGTTCATGGGCTGGTTGGGTCTCCGACAAAATCACCACTGGATTTGGTACTAAGA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 AGACCGGTTCATGGGCTGGTTGGGTCTCCGACAAAATCACCACTGGATTTGGTACCAAGA 239
Query 247 AAGAAGAAACAGGAATTTATCAAAAATCTAAAGATGAAGCAAGAAAAGCGGCTCAAGCCG 306
|||| ||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||
Sbjct 240 AAGAGGAAACAGGAATTTATCAAAAAACTAAAGACGAAGCAAGAAAAGCGGCCCGAGCCG 299
Query 307 CGGAAAACTATGCTTATGACAAGGCAAATTACGTCAAGGACTCTGCTTACGACAATGCAG 366
|||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 300 CGGAAAACTATGCTTATGACAAGGCAAAATACGTTAAGGACTCTGCTCACGACAATGCAG 359
Query 367 GTTACGCCAAGGATTTTGCTGAGAACAAGGCAGAGTACGCAAAGGATTTCGCTTATGACA 426
||||||| ||||||||||| |||||||||||| | |||||||| ||||| ||||||||||
Sbjct 360 GTTACGCTAAGGATTTTGCCGAGAACAAGGCACAATACGCAAAAGATTTTGCTTATGACA 419
Query 427 AGGCTGGTGATGCAAAGAACATGGCATACGAAAATGCGGGCTATGCTAAGGATTTTGCAT 486
|| ||||||||||||| |||||||| | |||||||||||||||||| |||||||| || |
Sbjct 420 AGACTGGTGATGCAAAAAACATGGCCTGCGAAAATGCGGGCTATGCGAAGGATTTCGCTT 479
Query 487 ATGACAAGGCTGGTGATGCAAAGGACATGGCTTATGAGAAA-GCGGGCCATGCCAAAGAT 545
|||| |||||||||||||||||||||||||| || || ||| |||||| |||| || |||
Sbjct 480 ATGATAAGGCTGGTGATGCAAAGGACATGGCCTACGA-AAATGCGGGCTATGCTAAGGAT 538
Query 546 TTCGCCTATGATAAGGCAGGCAATGCTAAGGACATGGCCTACGAGACAGCG-GGATATGC 604
|||||||||||||||||||||||||| |||||||||||||| || | || | || || ||
Sbjct 539 TTCGCCTATGATAAGGCAGGCAATGCAAAGGACATGGCCTATGATA-AGGGAGGCTACGC 597
Query 605 AAAGGATTTCGCCTATGATAAGGGAGGCT-ACGCGAAGGATGTTGCCTATGATAAGGCAG 663
|||||||| ||||||||||||| || | | || ||||| | |||||||| ||||| |
Sbjct 598 GAAGGATTTTGCCTATGATAAGGCTGG-TGATGCAAAGGACATGGCCTATGAGAAGGC-G 655
Query 664 GCA-ATGCAAAGGATATGGCATATGAGAAGGCGGGAA-ATGCGAAGGACATGGCCTACGA 721
| |||||||||| ||||||||||||||||| | | | || || ||||||||||||||
Sbjct 656 CCCTATGCAAAGGACATGGCATATGAGAAGGCCAGCATA-GCAAAAGACATGGCCTACGA 714
Query 722 GAAGGCGGAACA--CATAAAGGATTT-CACATATGATAAAGTGGGA-TCTG-CTTACGG- 775
|| |||| | | || ||| | | || | || | ||| | || | || | |
Sbjct 715 AAAAGCGGGGGATGCTTAT-GGAAGTGCGCAGAA-ATTGA-TGG-ACTCCGGCT-ATGAT 769
Query 776 AAGTGCACAGAGTATGAT--GGAC-TCTGGTTATGATAAGGCCGG-TGATGCCAAGGACA 831
||| | | | | ||| | |||| | || ||||| ||||| || | ||| |||||||
Sbjct 770 AAG-GT-CGGTG-ATGCTAAGGACAT-TGCCTATGAAAAGGCTGGCT-ATGTAAAGGACA 824
Query 832 TGGCCTATGAGAAGGCAGGCA-TAGTAAAAGACATG-GCATATGATAAAGCGGGGGAT-G 888
||||||| ||||| |||||| | | || ||| | || ||||| || ||||| || |
Sbjct 825 TGGCCTACGAGAAAACAGGCAAT-GCCAAGGACG-GCGCCTATGAGAAGGCGGGC-ATTG 881
Query 889 CAAAGGACGTGGCTTATGAGAAGGCTGGCATTGCCAAGGATATGGCCTATGATAAGGCGG 948
| |||| | |||| ||||| ||||| |||| ||||||||| ||||| |||||||||| ||
Sbjct 882 CCAAGGGCATGGCCTATGATAAGGCAGGCAATGCCAAGGACATGGCATATGATAAGGTGG 941
Query 949 G 949
|
Sbjct 942 G 942
Score = 219 bits (118), Expect = 7e-56
Identities = 188/222 (85%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 408 AAGGATTTCGCTTATGACAAGGCTGGTGATGCAAAGAACATGGCATACGAAAATGCGGGC 467
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 467 AAGGATTTCGCTTATGATAAGGCTGGTGATGCAAAGGACATGGCCTACGAAAATGCGGGC 526
Query 468 TATGCTAAGGATTTTGCATATGACAAGGCTGGTGATGCAAAGGACATGGCTTATGAGAAA 527
|||||||||||||| || ||||| ||||| || |||||||||||||||| ||||| ||
Sbjct 527 TATGCTAAGGATTTCGCCTATGATAAGGCAGGCAATGCAAAGGACATGGCCTATGATAAG 586
Query 528 GCG-GGCCATGCCAAAGATTTCGCCTATGATAAGGCAGGCAATGCTAAGGACATGGCCTA 586
| | ||| | || || ||||| |||||||||||||| || |||| ||||||||||||||
Sbjct 587 G-GAGGCTACGCGAAGGATTTTGCCTATGATAAGGCTGGTGATGCAAAGGACATGGCCTA 645
Query 587 CGAGACAG-CGGGATATGCAAAGGATTTCGCCTATGATAAGG 627
|||| || || ||||||||||| | || ||||| ||||
Sbjct 646 TGAGA-AGGCGCCCTATGCAAAGGACATGGCATATGAGAAGG 686
Score = 108 bits (58), Expect = 2e-22
Identities = 210/282 (74%), Gaps = 16/282 (6%)
Strand=Plus/Plus
Query 454 ACGAAAATGCGGGCTATGCTAAGGATTTTGCATATG-ACAAGGC-TGGTGATGCAAAGGA 511
|||| ||||| || || |||||||||||||| | | ||||||| | | ||||| ||
Sbjct 348 ACGACAATGCAGGTTACGCTAAGGATTTTGCCGA-GAACAAGGCACAAT-ACGCAAAAGA 405
Query 512 CATGGCTTATGAGAAAG-CGGGCCATGCCAAAGATTTCGCCTATGATAAGGCAGGCAATG 570
| |||||||| ||| | || |||| ||| | | |||| || || || ||| |||
Sbjct 406 TTTTGCTTATGA-CAAGACTGGTGATGCAAAAAACATGGCCTGCGAAAATGCGGGCTATG 464
Query 571 CTAAGGACATGGCCTACGAGACA-GCGGGAT-ATGCAAAGGATTTCGCCTATGATAA-GG 627
| ||||| | || || || | | || || | |||||||||| | ||||| || || |
Sbjct 465 CGAAGGATTTCGCTTATGATA-AGGCTGG-TGATGCAAAGGACATGGCCTACGAAAATGC 522
Query 628 GAGGCTACGCGAAGGATGTT-GCCTATGATAAGGCAGGCAATGCAAAGGATATGGCATAT 686
| ||||| || |||||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 523 G-GGCTATGCTAAGGAT-TTCGCCTATGATAAGGCAGGCAATGCAAAGGACATGGCCTAT 580
Query 687 GAGAAGGCG-GGAAATGCGAAGGACATGGCCTACGAGAAGGC 727
|| |||| | || | |||||||| | ||||| || |||||
Sbjct 581 GATAAGG-GAGGCTACGCGAAGGATTTTGCCTATGATAAGGC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5