BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18350.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931728 jgi|Araly1|931728|scaffold_304185.1 1227 0.0
> Ahg931728 jgi|Araly1|931728|scaffold_304185.1
Length=826
Score = 1227 bits (664), Expect = 0.0
Identities = 777/831 (94%), Gaps = 9/831 (1%)
Strand=Plus/Plus
Query 152 AAGCTTCaagatcagaa-aagatggaagttagagagaagaaagatgagaaaatggagatg 210
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTTCAAGATCAGAAGAA-ATGGAAGTTAGAGAGAAGAAAGATGAGAAAATGGAGATA 59
Query 211 acaagaagaaaaTCATCAGCTCTAGATCATCATCGTCTTCCTCCGTACACTTACTCC-CA 269
||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || ||
Sbjct 60 ACAAGAAGACAATCATCAGCTCTAGACCATCGTCTTCTTCCTCCGTACACTTAC-CCTCA 118
Query 270 AACCGCCAACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGACCCGGATCCGGATCC 329
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 AACCGCCGACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGAACCGGATCCGGATCC 178
Query 330 GGATCTTGATACTAACCCAATTTCTATATCTCATGCTCCAAGATCATACGCTAGGCCTCA 389
|||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 179 GGATCTTGATACCAACCCAATTTCTATAGCTCCTGCTCCAAGATCATACGTTAGGCCTCA 238
Query 390 AACTACTTCTCCGGGGAAGGCAAGGTATAGAGAATGCCAAAAGAATCACGCGGCGAGCTC 449
||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 239 AACTACTTCTCCGGGGAAGGCGAGGTATAGAGAATGCCAAAAGAACCACGTGGCGAGCTC 298
Query 450 CGGTGGACACGTTGTCGACGGTTGCGGCGAGTTTATGTCTTCCGGGGAAGAAGGCACGGT 509
|||||| ||||| || ||||||||||||||||||||| ||||||| ||||| || ||||
Sbjct 299 CGGTGGCCACGTGGTAGACGGTTGCGGCGAGTTTATGCCTTCCGGTGAAGAGGGTACGGC 358
Query 510 GGAGTCTCTTCTTTGTGCAGCTTGTGATTGCCACCGGAGCTTCCATAGAAAAGAGATCGA 569
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 359 GGAGTCTCTTATTTGTGCAGCTTGTGATTGTCACCGGAGCTTCCATAGGAAAGAGATCGA 418
Query 570 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCACAGAGACCACTCGGAAGCCG 629
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 419 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCTCAGAGGCCACTCGTTAGCCG 478
Query 630 CCACGTGTCTCCGATAATGATGAGTTTTGGTGGTGGTGGTGGTTGTGCGGCGGAGTCATC 689
|||||||||||||||||||||||| || ||||| |||||| | ||||||||||||||||
Sbjct 479 CCACGTGTCTCCGATAATGATGAGCTTCGGTGGCGGTGGT-G--GTGCGGCGGAGTCATC 535
Query 690 GACGGAGGATCTAAACAAGTTTCATCAATCTTTTAGTGGTTATGGAGTGGATCAGTTTCA 749
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 536 GACGGAGGATCTAAACAAATTTCATCAATCTTTTAGTGGTAATGGAGTGGATCAATTTCA 595
Query 750 TCATTATCAACCCAAGAAACGGTTTAGGACAAAGTTTAATGAAGAACAGAAGGAGAAGAT 809
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 596 TCAGTATCAGCCCAAGAAACGGTTTAGGACAAAGTTCAATGAAGAACAGAAGGAGAAGAT 655
Query 810 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATGACAAAACTAGAAGATGATGAAGTGAA 869
||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||
Sbjct 656 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATAACTAAACAAGAAGACGATGAAGTGAA 715
Query 870 TCGGTTTTGTCGTGAGATTAAAGTTAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 929
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 716 TCGGTTTTGTCGTGAGATTAATGTGAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 775
Query 930 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGATTTCtatatata-tat 979
||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 776 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGACT-CTATATATACTAT 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5