BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18360.1
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480744 jgi|Araly1|480744|fgenesh2_kg.3__3445__AT2G18360.1 1716 0.0
> Ahg480744 jgi|Araly1|480744|fgenesh2_kg.3__3445__AT2G18360.1
Length=1179
Score = 1716 bits (929), Expect = 0.0
Identities = 1114/1199 (93%), Gaps = 29/1199 (2%)
Strand=Plus/Plus
Query 7 AAACAAGAACCCAACACCAGATACATTATAATTAATCCCAACTCAAGAAGCTTTAAAATC 66
||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 1 AAATAAGAACCCAACACCAAATACATTATAATTAATCCCAACTCAAAAAGCTTTTAAATC 60
Query 67 TTCACCTTCCATTTGCTATT-GA-T-CATCTTCTTACATCTCTCTCCCTCTAAATATATC 123
|||||||||||||||||||| | | ||||||| |||||||||| || | ||
Sbjct 61 TTCACCTTCCATTTGCTATTATATTCCATCTTCAAACATCTCTCT-CC-C--------TC 110
Query 124 CAAACAAGAACGAAAGGAAAAAGAGTACATACAATGGTGAACTTTGTGGATTTACAAAAA 183
|||||||||| ||| || || | | |||||||||||||||||||||||| |||||||
Sbjct 111 CAAACAAGAA--AAA-GAGTAA-A-T--ATACAATGGTGAACTTTGTGGATTCACAAAAA 163
Query 184 CCATTGTTGTACCGCCTCATGAAATTGGCCGGTGTCATTCCTTACACCGTAGAGCTTGAA 243
|||||||||||||| |||||||||| ||| ||||||||||| |||||||||||| |||||
Sbjct 164 CCATTGTTGTACCGTCTCATGAAATGGGCTGGTGTCATTCCGTACACCGTAGAGATTGAA 223
Query 244 CCAGGGACAAAGATGAACTTCTGGATCCCAAAAGAAACCCTaaaaaaaaccaaaaaatct 303
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 224 CCAGGGACGAAGATGAACTTCTGGATCCCAAAAGAAACCCTAAAAAAGTCCAAAAAATCT 283
Query 304 gacaaaaaCTTTGCCGTGGAACCCCAAAAACCTACGAAACCAGTCCTATTGTTCATCCAT 363
|||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 284 GACAAAAACTCTGCCGTGGAACCCCAAAAACCTACCAAACCAGTCCTCTTGTTCATCCAC 343
Query 364 GGCTTTGCAGCCGAAGGGATCGTGACGTGGCAGTTCCAGGTCGGATCATTAGCCAAGAAG 423
||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 344 GGCTTCGCAGCTGAAGGGATTGTGACGTGGCAGTTCCAGGTCGGATCCTTAGCCAAGAAG 403
Query 424 TACTCAGTCTATATACCAGACCTCCTCTTCTTTGGTGGGTCCTACTCCGACAACGCGGAT 483
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||
Sbjct 404 TACTCAGTCTATATACCGGACCTCCTCTTCTTTGGTGGGTCTTACTCCGACAACCCGGA- 462
Query 484 C-GATCACCAGCGTTTCAAGCCCACTGTTTAGTCAAGTCTCTTCGTATCCTCGGTATCGA 542
| | ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 463 CAGGTCACCAGCGTTCCAAGCCCACTGTTTAGTCAAGTCTCTTCGTATCCTCGGCGTGGA 522
Query 543 AAAGTTTACT-CTTGTAGGGTTTAGTTACGGTGGCATGGTTGCTTTCAAGATCGCCGAGG 601
|||||| | ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 523 TAAGTTT-GTCCTTGTAGGGTTTAGTTACGGTGGCATGGTGGCTTTCAAGATAGCTGAGG 581
Query 602 AGTACCCTGAGATGGTTCAAGCCATGGTGGTTTCAGGTTCGATACTCGCGATGACTGATA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AGTACCCTGAGATGGTTCAAGCCATGGTGGTTTCAGGTTCGATACTCGCGATGACTGATA 641
Query 662 CGATCAGTGAGTCTAATTTGAACCAGTTAGGATTTAAGTCGTCGGCGGATCTTTTGTTAC 721
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 642 CAATCAGTGAGTCTAATTTGAACCAGTTAGGGTTTAAGTCATCGGCGGATCTTTTGTTAC 701
Query 722 CAACTTCGGTTAAAGGGCTCAAGACTCTCTTCACCCTTGCTGTTCATAAACCCATGTGGT 781
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 702 CAACTTCGGTTAAAGGACTCAAGACTCTCTTTACCCTTGCTGTTCATAAACCCATGTGGT 761
Query 782 TCCCGAAACGGCTCTTCAAGGATTTCATTGAGGTGATGATTACCAATAGGAAGGAAAGAG 841
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCCCGAATCGGCTCTTCAAGGATTTCATTGAGGTGATGATTACCAATAGGAAGGAAAGAG 821
Query 842 CAGAATTGTTAGAAGCTTTGGTCATCAGCAACAAAGATGTGACAATCCCTCGTTTTCAAC 901
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 822 CAGAATTGTTGGAAGCTTTGGTCATCAGCAACAAAGATGTGACCATCCCTCGTTTTCAAC 881
Query 902 AGAAAATACATCTTCTGTGGGGCGAAAGTGATCAAATTTTTAACCTTGAATTTGCCAAGA 961
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGAAAATCCATCTTCTGTGGGGCGAAAGTGATCAAATTTTTAACCTTGAATTTGCCAAGA 941
Query 962 GCATGAAAGAGCAACTAGGCGAAAATGCAACAATGGAGAGTATaaaaaaaGCAGGTCACT 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GCATGAAAGAGCAACTAGGCGAAAATGCAACAATGGAGAGTATAAAAAAAGCAGGTCACT 1001
Query 1022 TGGCACATTTGGAGAGACCTTGTGTCTATAACAGACGTCTCAAAAAGTTTCTTGCTTCAG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TGGCACATTTGGAGAGACCTTGTGTCTATAACAGACGTCTCAAAAAGTTTCTTGCTTCAG 1061
Query 1082 TTTACTCCGAAAACTAATTT-GGATGTAATCGATTCTCACATCAACACCGAATGAATTTA 1140
||||||||||||||||| || || | |||| |||||||||||||| || ||||||||||
Sbjct 1062 TTTACTCCGAAAACTAAATTCGGTT-TAATTGATTCTCACATCAATGCCCAATGAATTTA 1120
Query 1141 TTTATCTTATTTCTTTGGTT-TCAGTTCTTCTTTCAAAA-TAATGTAACCTGATATATT 1197
|||||||||||||||||||| | | ||||||| |||||| |||||||||||||||||||
Sbjct 1121 TTTATCTTATTTCTTTGGTTGTAA-TTCTTCTGTCAAAAATAATGTAACCTGATATATT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5