BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18370.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480745 jgi|Araly1|480745|fgenesh2_kg.3__3446__AT2G18370.1 725 0.0
> Ahg480745 jgi|Araly1|480745|fgenesh2_kg.3__3446__AT2G18370.1
Length=608
Score = 725 bits (392), Expect = 0.0
Identities = 568/645 (88%), Gaps = 43/645 (7%)
Strand=Plus/Plus
Query 58 CAACGATGAATGTATTGAAATGTCTAGCGATCATTTCCGTTCTCGGAATATTCTTCATAC 117
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CAACGATGAATGTATTGAAAAGTCTAGCGATCATTTCCGTTCTCGGAATATTCTTTATAC 60
Query 118 CTCGTTATTCTGAATCCGCTATATCTTGCAGTGTTGTGTTACAGGATTTGCAGCCATGTG 177
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTCGTTATTCTGAATCCGCGATATCTTGCAGTGTTGTGATACAGGATTTGCAGCCATGTG 120
Query 178 TGAGCTACTTGACCAGCGGAAGTGGAAACCCTCCGGAGACTTGTTGCGACGGAGTTAAGA 237
||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 121 TGAGCTATTTGACCAGCGGAAGTGGAAACCCTCCGAAGACTTGCTGCGACGGAGTTAAGA 180
Query 238 GTTTAGCGGCGGCAACCACCACATCTGCCGATAAGAAGGCAGCTTGTCAATGCATCAAGT 297
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 GTTTAGCGGCGGCAACCACCACATCTGCCGATAAGAAGGCGGCTTGTCAATGCATCAAGT 240
Query 298 CAGTGGCTAATAGTGTTACCGTGAAGCCTGAATTGGCTCAAGCCCTTGCTAGCAATTGTG 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CAGTGGCTAATAGTGTTACCGTGAAGCCTGAATTGGCTCAGGCCCTTGCTAGCAATTGTG 300
Query 358 GTGCGAGCTTGCCCGTTGATGCTTCTCCTACTGTCGACTGCACTACTGTTGGTTGAGAAA 417
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 301 GCGCGAGCTTGCCCGTTGATGCATCTCCTACTGTCGACTGCACTACGGTTGGTTGAGAAA 360
Query 418 TTCTCAACATTGATCAATGGTCCATCTTGTCCTAATTAAGTACGCAATTTATATCAATAA 477
||| |||||| |||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 361 TTCACAACATCGATCAATGGTCCATATCGTCCTAATTAAGTATGCAATTTATATCAATAA 420
Query 478 AGGCGC--C--GTA-TAATATATGTAGGCGAATGTACACATGTTGTAAGGTTCATTTAGT 532
|||||| | | | ||| |||| |||||||||||| ||| | ||| ||
Sbjct 421 AGGCGCGTCCAGCAGTAAGATATTTAGGCGAATGTA----TGT---A-----CATGTA-- 466
Query 533 TTCTTcatgtatgtacatgtacatgtgtattgtgtagttgtctttgtgtgcatttgtgca 592
| |||| |||| ||| ||| ||| || ||| | | || ||||||| | ||
Sbjct 467 --C---ATGT--GTAC-TGTGGG-GTGCATT-TG-AGT-G-CATT-TGTGCAT--G--CA 508
Query 593 -tgcaatgcaATCATTTACCCCGGTGGTTTGGATATTACAGTGTTGTGAACTGATGAGTC 651
|||||| || | || |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 509 ATGCAAT-CA-T--TT-ACCCCGGTGGTTTGGATATTACAGTGCTGTGGACTGATGAGTC 563
Query 652 ATGAAAACACAGCGTTTCTTGATGTTGAATATTTTACGAGGGCTC 696
||||||| ||||| |||| || |||||||||||||| |||||||
Sbjct 564 ATGAAAAAACAGCTTTTCATGTTGTTGAATATTTTAAAAGGGCTC 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5