BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18380.1
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906687 jgi|Araly1|906687|Al_scaffold_0003_3815 920 0.0
> Ahg906687 jgi|Araly1|906687|Al_scaffold_0003_3815
Length=621
Score = 920 bits (498), Expect = 0.0
Identities = 586/628 (93%), Gaps = 8/628 (1%)
Strand=Plus/Plus
Query 80 ATGATGGGATACCAAACAAACTCTAATTTCTCCATGtttttttCCTCGGAAAATGACGAC 139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGGGATACCAAACAAACCCTAATTTCTCCATGTTTTTTTCCTCGGAAAATGACGAC 60
Query 140 CAAAACCACCACAACTACGATCCTTATAATAATTTCTCTTCATCAACTTCTGTTGATTGC 199
|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 61 CAAAACCACCACAATTACGATCCTTATAATACTTTCTCTTCATCACCTTCTGTTGATTGC 120
Query 200 ACTCTCTCACTTGGAACACCCTCTACTCGTCTCGACGACCACCATAGATTTTCTTCTGCT 259
||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||
Sbjct 121 ACTCTCTCACTTGGAACACCCTCCACTCGTCTCGATGATCACCGTAGATTTTCTTCTGCT 180
Query 260 AATTCTAACAACATCTCCGGCGACTTTTA-TATTCACGGAGGAAACGCTAAGACTTCTTC 318
|||||||||||||||||||||||||| || | ||||||||||||||||||||||| | ||
Sbjct 181 AATTCTAACAACATCTCCGGCGACTTCTACT-TTCACGGAGGAAACGCTAAGACTACGTC 239
Query 319 GTACAAGAAGGGTGGTGTTGCTCATAGCCTACCTCGCCGTTGTGCTAGCTGCGACACCAC 378
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTACAAGAAGGGTGGTAATGATCATAGCCTACCTCGCCGTTGTGCTAGCTGCGACACCAC 299
Query 379 TTCAACTCCTCTATGGAGAAACGGACCAAAAGGACCTAAGTCGTTATGTAACGCGTGTGG 438
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 300 TTCAACTCCTCTATGGAGAAATGGACCAAAAGGACCTAAGTCGTTATGTAATGCTTGTGG 359
Query 439 AATCCGATTCAAGAAAGAGGAGAGGCGTGCGACGGCCAGAAACTTAACGATCTCCGGTGG 498
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 AATCCGATTCAAGAAGGAGGAGAGGCGTGCGACGGCCAGAAACTTAACGATATCCGGTGG 419
Query 499 AGGTTCATCAGCGGCAGAAGTCCCAGTAGAGAATTCGTACAACGGAGGTGGAAACTATTA 558
||||||||| ||||||||| | || ||||||||| |||||||||||||||||||||||||
Sbjct 420 AGGTTCATCGGCGGCAGAAATTCCGGTAGAGAATCCGTACAACGGAGGTGGAAACTATTA 479
Query 559 CAGTCATCATCATCATCACTATGCCTCGTCGTCGCCGTCGTGGGCTCATCAGAACACACA 618
|||||||||||| | | | | || |||||||||||||||||||||||||||||||||||
Sbjct 480 CAGTCATCATCA-C-T-A-T--GCTTCGTCGTCGCCGTCGTGGGCTCATCAGAACACACA 533
Query 619 AAGAGTTCCATATTTCTCACCGGTTCCGGAGATGGAATATCCCTACGTGGATAACGTCAC 678
||||||| | ||||||||||||| ||||||||||||||||||||||| ||| |||| ||
Sbjct 534 AAGAGTTGCGTATTTCTCACCGGCACCGGAGATGGAATATCCCTACGTTGATGACGTAAC 593
Query 679 GGCTTCTTCTTTTATGTCTTGGAATTGA 706
|||| |||| ||||||||||||||||||
Sbjct 594 GGCTGCTTCGTTTATGTCTTGGAATTGA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25961706477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5