BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18390.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931733 jgi|Araly1|931733|scaffold_304190.1 963 0.0
> Ahg931733 jgi|Araly1|931733|scaffold_304190.1
Length=599
Score = 963 bits (521), Expect = 0.0
Identities = 570/594 (96%), Gaps = 1/594 (0%)
Strand=Plus/Plus
Query 150 GAAGCTCTCTTGTATGAAAAAATGGGACTGTTAAGCATAATCCGGAAGATCAAGAAGAAA 209
|||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGCTCTGTTGTGTG-GAAAATGGGACTGTTAAGCATAATCCGGAAGATCAAGAAGAAA 59
Query 210 GAGAAGGAGATGCGTATTCTTATGGTTGGACTTGATAATTCTGGGAAGACGACGATTGTT 269
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAGAAGGAGATGCGAATTCTTATGGTTGGACTTGATAATTCTGGGAAGACGACGATTGTT 119
Query 270 CTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAA 329
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 CTGAAGATAAACGGAGAAGACACAAGTGTGATTAGTCCAACACTTGGATTCAACATCAAA 179
Query 330 ACCATTATCTACCAAAAGTATACGCTAAATATATGGGATGTTGGTGGGCAAAAGACTATA 389
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCATTGTTTACCAAAAGTATACGCTAAATATATGGGATGTTGGTGGGCAAAAGACTATA 239
Query 390 AGATCGTATTGGAGGAATTACTTTGAGCAGACTGATGGTTTGGTTTGGGTGGTTGATAGT 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGATCGTATTGGAGGAATTACTTTGAGCAGACTGATGGTTTGGTTTGGGTGGTTGATAGT 299
Query 450 TCTGATCTTAGGAGGTTAGATGATTGCAAGATGGAACTTGACAATCTCTTGAAAGAAGAG 509
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 300 TCTGATCTTAGGAGGTTAGATGACTGTAAGATGGAACTTGACAATCTCTTGAAGGAAGAG 359
Query 510 AGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAAGGTGCACTA 569
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 AGGCTAGCTGGGTCATCTTTGCTGATACTAGCAAATAAACAGGATATTCAAGGTGCACTT 419
Query 570 ACACCTGATGAAATTGGCAAGGTGCTAAACTTAGAGTCCATGGATAAAAGCCGGCACTGG 629
|| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 420 ACTCCTGAAGAAATTGGCAAAGTGTTAAACTTAGAGTCCATGGATAAAAGCCGGCACTGG 479
Query 630 AAGATAGTGGGTTGCAGCGCATACACGGGTGAAGGTTTGTTGGAAGGATTCGATTGGTTG 689
|| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 480 AAAATCGTGGGTTGCAGCGCATACACAGGTCAAGGTTTGTTGGAAGGATTCGATTGGTTG 539
Query 690 GTTCAAGACATTGCCTCCAGGATTTACATGCTTGACTAATCGACTACTGCATTG 743
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GTTCAAGACATTGCCTCCAGGATTTACATGCTTGACTAATCAACTACTGCATTG 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5