BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18400.1

Length=643
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480748 jgi|Araly1|480748|fgenesh2_kg.3__3449__AT2G18400.1         523    5e-148


> Ahg480748 jgi|Araly1|480748|fgenesh2_kg.3__3449__AT2G18400.1
Length=458

 Score =  523 bits (283),  Expect = 5e-148
 Identities = 337/363 (93%), Gaps = 3/363 (1%)
 Strand=Plus/Plus

Query  132  TAGGATAGAGAGACATGGAAGCCAAGTTTTTCCGGTTCTTGAAGATTGTTGGAGTTGGAT  191
            ||||| | | ||| |||||| |||||||||| || |||||||||||||||||||||||||
Sbjct  13   TAGGAGAAATAGAAATGGAAACCAAGTTTTTTCGATTCTTGAAGATTGTTGGAGTTGGAT  72

Query  192  ACAAAGCTAGAGCTGAGGAAGCAGGGCGTTTCTTATACCTCAAATTGGGTTACAGTCACG  251
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  73   ACAAAGCTAGAGCTGAGGAAGCAGGACGTTTCTTATACCTCAAATTGGGTTACAGTCATG  132

Query  252  AAGTCGAACTTGCGGTTCCTCCAGCGGTTCGAGTCTTTTGTTTCAAGAACAATGTGGTTT  311
            |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  133  AAGTTGAACTTGCTGTTCCTCCAGCGGTTCGGGTCTTTTGTTTCAAGAACAATGTGGTTT  192

Query  312  GCTGCACTGGAATCGACAAGCAAAGAGTGCATCAGTTTGCTGCAACGGTAAGGAGTTGCA  371
            ||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct  193  GCTGCACCGGAATCGACAAGCAGAGGGTGCATCAGTTTGCTGCAACAGTAAGGAGTTGCA  252

Query  372  AACCCCCTGAACCTTATAAGGGCAAAGGCATAATGTACACTGATGAAGTCGTCAAGAAGA  431
            |||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct  253  AACCTCCTGAACCTTATAAGGGCAAAGGCATTATGTACATTGACGAAGTCGTCAAGAAGA  312

Query  432  AACAAGGAAAGAAGTCCAAATGATCTCTCTTTGTATGCTTCTTCTTCCTTCTTACTCTGC  491
            |||||||||||||||| |||||||||| ||||||||||||||||  | |||||||| |||
Sbjct  313  AACAAGGAAAGAAGTCGAAATGATCTCGCTTTGTATGCTTCTTC--C-TTCTTACTTTGC  369

Query  492  AGA  494
            |||
Sbjct  370  AGA  372


 Score =  132 bits (71),  Expect = 4e-30
 Identities = 81/86 (94%), Gaps = 0/86 (0%)
 Strand=Plus/Plus

Query  535  TTATCAATAAGTTTTATTTGGTTGTATGAGACATCATTTTGTTGTTAAGTCTCTTTCAAT  594
            ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  373  TTATCAATAAGTTATATTTGGATGTATGAAACATCATTTTGTTGTTAAGTCTCTTTCAAT  432

Query  595  GAAACAAAATGAGAAGAGTTCGTCTT  620
             ||||||||||||||||||| |||||
Sbjct  433  TAAACAAAATGAGAAGAGTTTGTCTT  458



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559962706


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5