BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18400.1 Length=643 Score E Sequences producing significant alignments: (Bits) Value Ahg480748 jgi|Araly1|480748|fgenesh2_kg.3__3449__AT2G18400.1 523 5e-148 > Ahg480748 jgi|Araly1|480748|fgenesh2_kg.3__3449__AT2G18400.1 Length=458 Score = 523 bits (283), Expect = 5e-148 Identities = 337/363 (93%), Gaps = 3/363 (1%) Strand=Plus/Plus Query 132 TAGGATAGAGAGACATGGAAGCCAAGTTTTTCCGGTTCTTGAAGATTGTTGGAGTTGGAT 191 ||||| | | ||| |||||| |||||||||| || ||||||||||||||||||||||||| Sbjct 13 TAGGAGAAATAGAAATGGAAACCAAGTTTTTTCGATTCTTGAAGATTGTTGGAGTTGGAT 72 Query 192 ACAAAGCTAGAGCTGAGGAAGCAGGGCGTTTCTTATACCTCAAATTGGGTTACAGTCACG 251 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 73 ACAAAGCTAGAGCTGAGGAAGCAGGACGTTTCTTATACCTCAAATTGGGTTACAGTCATG 132 Query 252 AAGTCGAACTTGCGGTTCCTCCAGCGGTTCGAGTCTTTTGTTTCAAGAACAATGTGGTTT 311 |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 133 AAGTTGAACTTGCTGTTCCTCCAGCGGTTCGGGTCTTTTGTTTCAAGAACAATGTGGTTT 192 Query 312 GCTGCACTGGAATCGACAAGCAAAGAGTGCATCAGTTTGCTGCAACGGTAAGGAGTTGCA 371 ||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| Sbjct 193 GCTGCACCGGAATCGACAAGCAGAGGGTGCATCAGTTTGCTGCAACAGTAAGGAGTTGCA 252 Query 372 AACCCCCTGAACCTTATAAGGGCAAAGGCATAATGTACACTGATGAAGTCGTCAAGAAGA 431 |||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 253 AACCTCCTGAACCTTATAAGGGCAAAGGCATTATGTACATTGACGAAGTCGTCAAGAAGA 312 Query 432 AACAAGGAAAGAAGTCCAAATGATCTCTCTTTGTATGCTTCTTCTTCCTTCTTACTCTGC 491 |||||||||||||||| |||||||||| |||||||||||||||| | |||||||| ||| Sbjct 313 AACAAGGAAAGAAGTCGAAATGATCTCGCTTTGTATGCTTCTTC--C-TTCTTACTTTGC 369 Query 492 AGA 494 ||| Sbjct 370 AGA 372 Score = 132 bits (71), Expect = 4e-30 Identities = 81/86 (94%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 535 TTATCAATAAGTTTTATTTGGTTGTATGAGACATCATTTTGTTGTTAAGTCTCTTTCAAT 594 ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 373 TTATCAATAAGTTATATTTGGATGTATGAAACATCATTTTGTTGTTAAGTCTCTTTCAAT 432 Query 595 GAAACAAAATGAGAAGAGTTCGTCTT 620 ||||||||||||||||||| ||||| Sbjct 433 TAAACAAAATGAGAAGAGTTTGTCTT 458 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23559962706 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5