BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18410.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319792 jgi|Araly1|319792|fgenesh1_pm.C_scaffold_3002808 1740 0.0
> Ahg319792 jgi|Araly1|319792|fgenesh1_pm.C_scaffold_3002808
Length=1137
Score = 1740 bits (942), Expect = 0.0
Identities = 1076/1139 (94%), Gaps = 16/1139 (1%)
Strand=Plus/Plus
Query 23 ATGGCGGAATCGATTTTCAGAAAGCTCAGAGATGGTGGCGAAGAAGGCGAACTCGCACCA 82
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCGGAATCGATTTTCAGAAAGCTAAGAGATGGTGGCGAAGAAGGCGAGCTCGCACCA 60
Query 83 GCTCTCACTATAGAAGAAACTGTAGCTTCCCCTTTCGGACTCGATGTCTCCGGCTATCTT 142
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 61 GCTCTCACTATAGAAGAAACTGTAGCTTCCCCTTTTGGAATCGATGTCTCCGGCTACCTT 120
Query 143 CTCACAAATCTATCTTCTTCAATTTTAGCTGGAAAATCCTCGTCGCAGGGTCTTGTGTTG 202
||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 121 CTCACAAATCTCTCTTCTTCAATTTTAGCTGGAAAATCCAAGTCGCAAGGTCTCGTGTTG 180
Query 203 ATCACATTCTCGCGGAGCCCTTCGTTCTATTTGCAATTGTTGAAGCAAAAAGGAATCGTT 262
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ATCACATTCTCGCGGAGCCCTTCGTTCTATTTGCAATTGTTGAAGCAAAGAGGAATCGTT 240
Query 263 GTCTCTTCATCTTCTAAATGGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCTCTTCATCTTCTAAATGGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGG 300
Query 323 ATTGATCAATCTTCAACTAGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACATAAGTGT 382
||| || || |||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 ATTCATGAACCTTCAAGTGGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACACAAGTGT 360
Query 383 GTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGAGTTGGTTGGA 442
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 361 GTGAGTGACTTGAGAAAGCTTTTTTCTACAGTCATTGAAGCAGGAAGAGAGTTGGTTGGA 420
Query 443 -ACTGGGAAGACACGTTTCTGCGTTGCCATTGATTCGGTAAATGAGTTGCTAAGACATTC 501
|| |||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 421 GAC-GGGAAGACACATTTCTGTGTTGCCATTGATTCGGTGAATGAGCTGCTAAGACATTC 479
Query 502 AGCGATGCCATTAGTTTCTGGTCTTTTAACAGATCTTCGAAGCCATGCGCAAATTTCCAG 561
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ATCGATGCCATTAGTTTCTGGTCTTTTAACAGATCTTCGAAGCCACGCGCAAATTTCCAG 539
Query 562 TGTCTTTTGGTCATTGAACACTGACCTTCACCAAGAGAAGGTCACAAATGCGCTTGAATA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTCTTTTGGTCATTGAACACTGACCTTCACCAAGAGAAGGTCACAAATGCGCTTGAATA 599
Query 622 TATATCCACAATGAAAGCGAACTTAGAACCTTTGTGTCCATCTTCAGATGGGCAAAGGAA 681
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATATCCACGATGAAAGCCAACTTAGAACCTTTGTGTCCATCTTCAGATGGGCAAAGGAA 659
Query 682 TGCTTTAGAAAACCTCTTTTCGGTTCATCAGGATTTCGGTAAAGGACGGTTTCATGTCCG 741
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TGCTTTAGAAAACCTCTTTTTGGTTCATCAGGATTTCGGTAAGGGACGGTTTCATGTCCG 719
Query 742 GTTTAAGCTTAGAAAAGGACGTGTGAGAGTAATGTCTGAAGAATATCATGTTGATCAATC 801
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 GTTTAAGCTTAGAAAGGGACGTGTAAGAGTAATGTCTGAAGAATATCATGTTGATCAATC 779
Query 802 GGGGATAAACTTTTCACCCATTTCCTCTGTGGATACTGTTATTGCAGCCACTAAAAGCCT 861
||| ||| |||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 780 GGGAATAGTCTTTTCACCCATTTCCTCAACGGATACTGTTATTGTAACCACTAAAAGCCT 839
Query 862 TTTGCCTAAGG----TT--C-A----ATT-CAATCTC-CAGTTGTCTGAGAAAGAACGGG 908
||||||||||| || | | ||| |||||| | ||||||||||||||||||||
Sbjct 840 TTTGCCTAAGGCAAGTTATCTAGTTCATTTCAATCTAAC-GTTGTCTGAGAAAGAACGGG 898
Query 909 TCGAGAAAGAAAAAGTTGTGCTTCCTTTTGAGCACCAAGATGATGGAAAATCGAACGAGA 968
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCGAGAAGGAAAAAGTTGTGCTTCCTTTTGAGCACCAAGATGATGGAAAATCGAACGAGA 958
Query 969 TCTATGATGGGAGGAGATCTCTTGTGGATGGCAAGATTGAGACAACACCATTGTCGTCAA 1028
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TCTATGATGGGCGGAGATCTCTTGTGGATGGCAAGATTGAGACAACACCATTGTCTTCAA 1018
Query 1029 TGGAGTTGCAGACCGATGTGGTTTCGTCGGGTAAGGGTGGTGAGATTATATATTTCAGAG 1088
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 TGGAGTTGCAGACCGACGTAGTTTCTTCGGGTAAGGGTGGTGAGATTATATATTTCAGAG 1078
Query 1089 ATTCAGACGATGAGCATCCTGATTCTGATGAAGATCCTGATGATGATTTGGACATTTAA 1147
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATTCAGACGATGAGCATCCTGATTCTGATGAAGATCCTGATGATGATTTGGACATTTAA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5