BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18420.1

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906691 jgi|Araly1|906691|Al_scaffold_0003_3819                    416    8e-116
  Ahg926960 jgi|Araly1|926960|scaffold_202521.1                        141    5e-33 


> Ahg906691 jgi|Araly1|906691|Al_scaffold_0003_3819
Length=285

 Score =  416 bits (225),  Expect = 8e-116
 Identities = 266/286 (93%), Gaps = 2/286 (1%)
 Strand=Plus/Plus

Query  61   ATGGCTGTATTCAGAGTCTTGCTTGCTTCTCTTCTCATATCTCTTCTTGTCCTCGACTTC  120
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTGTATTCAGAGTCCTGCTTGCTTCTCTTCTCATATCTCTTCTTGTCCTCGACTTC  60

Query  121  GTCCATGCCGATATGGTGACGTCGAATGACGCCCCTAAAATCGATTGCAACAGCAGGTGC  180
            |||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||
Sbjct  61   GTCCATGCCGATATGGTGACGTCGGATAACGCCCCTAAAATCGATTGCAAGAGTAGGTGC  120

Query  181  CAAGAGCGGTGCAGTCTTTCGAGTAGGCCAAATCTTTGTCACAGAGCGTGCGGGACTTGC  240
            ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct  121  CAAGAACGGTGCAGTCTCTCGAGTAGGCCGAATCTTTGTCACAGAGCGTGCGAGACTTGC  180

Query  241  TGCGCTAGGTGCAACTGCGTGGCACCGGGCACATCCGGAAACTACGACAAATGTCC-GTG  299
            ||||||||||||||||||||| |||||||||||| ||||||||||||||| || |  |||
Sbjct  181  TGCGCTAGGTGCAACTGCGTGCCACCGGGCACATACGGAAACTACGACAAGTG-CAAGTG  239

Query  300  CTATGGTAGCCTAACCACCCACGGAGGACGCAGAAAGTGTCCTTAA  345
            ||||| |||||| ||||||||||| || ||| ||||||||||||||
Sbjct  240  CTATGCTAGCCTCACCACCCACGGTGGTCGCCGAAAGTGTCCTTAA  285


> Ahg926960 jgi|Araly1|926960|scaffold_202521.1
Length=341

 Score =  141 bits (76),  Expect = 5e-33
 Identities = 137/166 (83%), Gaps = 5/166 (3%)
 Strand=Plus/Plus

Query  187  CGGTGCAGTCTTTCGAGTAGGCCAAATCTTTGTCACAGAGCGTGCGGGACTTGCTGCG-C  245
            |||||||| || ||||| ||||| |  || |||||||||||||||||||||||||||  |
Sbjct  162  CGGTGCAGGCTCTCGAGGAGGCCGAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTAC  221

Query  246  TAGGTGCAACTGCGTGGCACCGGGCACATCCGGAAACTACGACAAATGTCC-GTGCTATG  304
             ||||||||||| ||| | |||||||||| ||| ||||||||||  || || |||||| |
Sbjct  222  -AGGTGCAACTGTGTGCCTCCGGGCACATACGGTAACTACGACACGTG-CCAGTGCTACG  279

Query  305  GTAGCCTAACCACCCACGGAGGACGCAGAAAGTGTCCTTAA-AAAC  349
             || ||| ||||||||||| |||||| | ||||| || ||| ||||
Sbjct  280  CTACCCTCACCACCCACGGTGGACGCCGCAAGTGCCCATAAGAAAC  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20642173649


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5