BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18440.1

Length=1378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343472 jgi|Araly1|343472|fgenesh1_pg.C_scaffold_3003235           224    1e-57
  Ahg906692 jgi|Araly1|906692|Al_scaffold_0003_3820                    198    8e-50


> Ahg343472 jgi|Araly1|343472|fgenesh1_pg.C_scaffold_3003235
Length=573

 Score =  224 bits (121),  Expect = 1e-57
 Identities = 176/201 (88%), Gaps = 10/201 (5%)
 Strand=Plus/Minus

Query  253  GATCTAGATC-TGGATCGTCCTTCGCGGCTTCTTCACATGCAAGATTCTGTGAATTGTTC  311
            |||||||  | |||||||||||| || ||||||||| |||| ||||||| ||||||| ||
Sbjct  196  GATCTAG-CCTTGGATCGTCCTTTGCTGCTTCTTCAGATGCGAGATTCTTTGAATTGATC  138

Query  312  AAGTTGAGGCAT-C-ATTTCTGGATTACTAGGAGACGAATCTGTTGCAGACGGATGTGTG  369
              | |||||| | | | ||||||| ||| ||||| | |||||||||||||||||| ||||
Sbjct  137  --GCTGAGGCGTCCGA-TTCTGGA-TACAAGGAGGCCAATCTGTTGCAGACGGATCTGTG  82

Query  370  TGTGTTGGATTGAATTGAGATTAGGGTGTAGAAGATGTTTTGT-GGATAGCTAATAGCTT  428
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  81   TGTGTTGGATTGAATTGAGATTAGGGTGTAGAAGATGTTTTGTTGGATAGCTAATCGCTT  22

Query  429  CCTGATTGCATCTCT-GTCAT  448
            ||||||||||||| | |||||
Sbjct  21   CCTGATTGCATCTTTTGTCAT  1


> Ahg906692 jgi|Araly1|906692|Al_scaffold_0003_3820
Length=204

 Score =  198 bits (107),  Expect = 8e-50
 Identities = 184/218 (84%), Gaps = 17/218 (8%)
 Strand=Plus/Plus

Query  461  ATGTCAGGTGCGCTTGCATGGCAGGTCAAAAAACTGATCCTCAATaaaaaaaa--GATTT  518
            |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  1    ATGTCAGGTGCGCTTGCATGGCAGGTCAAAAAACTGATCCTCAATAAAAAAAAAAGATTT  60

Query  519  TGTGGGTTTTGGAGAGGAGGTCGCACGGGTTATTAT-TTTTTCCCGGGAtctcttctcct  577
            |||||||| |||||||||| |||||||||||||| | ||||||||||||||| |||||||
Sbjct  61   TGTGGGTTGTGGAGAGGAGATCGCACGGGTTATT-TGTTTTTCCCGGGATCTTTTCTCCT  119

Query  578  ctgtgtgtgtcgtcttgcctctgctctatctctctccctgctctTTCACATTTCATATCT  637
            ||||||||  | | | || |||||||   |||||||||| | || || |  ||  || | 
Sbjct  120  CTGTGTGT--C-T-T-GCTTCTGCTCC--CTCTCTCCCTTCCCTATCTCCCTT--TA-CA  169

Query  638  TTCTTAAATGCTCATATACACTCAAAAACCGATCATAA  675
             | | |  |||||||||| ||| ||||| |||||||||
Sbjct  170  GT-T-AT-TGCTCATATATACTTAAAAATCGATCATAA  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51580306701


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5