BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18460.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480753 jgi|Araly1|480753|fgenesh2_kg.3__3454__AT2G18460.2 1230 0.0
> Ahg480753 jgi|Araly1|480753|fgenesh2_kg.3__3454__AT2G18460.2
Length=808
Score = 1230 bits (666), Expect = 0.0
Identities = 714/738 (97%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 1 ATGGAAACGAGGGAGAGAGATCTAGAACGATTGATCCCGATGCATAAATCCGGAGCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 ATGGAAACGAGGGAGAGAGATCTAGAACGATTGATCCCGATGCATAAATCCGGAGCTTCT 69
Query 61 CCTCGCGACGTCGTTTTGTCTGTTCCGCCGTCTCCTCTCGCTTCTCCGATCCACGTCGCC 120
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 70 CCTCGCGACGTCGTTTTGTCTGTTCCGCCTTCTCCTCTCGCTTCTCCGATTCACGTCGCC 129
Query 121 GGCAAAGAGGCGATTTACAAAGTCATTAGAAGCTGGGCCTCCAAAAAGTTCATGACCGGA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GGAAAAGAGGCGATTTACAAAGTCATTAGAAGCTGGGCCTCCAAAAAGTTCATGACCGGA 189
Query 181 TGTGTCATTCTGCTACCAATCGCTGTCACATTCTACTTCACGTGGTGGTTTATACATTTC 240
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 190 TGTGTCATTCTGCTTCCAATCGCCGTCACATTCTACTTCACATGGTGGTTTATACATTTC 249
Query 241 GTTGATGGATTCTTCTCCCCGATCTATACTCATCTCGGAATCAATATGTTCGGTCTTGGC 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GTTGACGGATTCTTCTCCCCGATCTATACTCATCTCGGAATCAATATGTTCGGTCTTGGA 309
Query 301 TTTGTAACATCCATCACATTCATATTTATGGTTGGTGTGTTCATGTCTTCATGGCTTGGA 360
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 310 TTTGTGACATCCATCACATTCATATTTATGGTTGGTGTATTCATGTCTTCATGGCTTGGA 369
Query 361 GCTTCAGTTCTCAGTATCGGAGAATGGTTTATCAAGAAGATGCCTCTCGTAAGCTACATC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 370 GCTTCAGTTCTCAGTATTGGAGAATGGTTTATCAAGAAGATGCCTCTCGTAAGTTATATC 429
Query 421 TACTCAGCTTCTAAACAAATTAGTGGAGCAATCTCACCAGATCAAAGCTCAGGTGCATTC 480
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 430 TACTCAGCTTCTAAGCAAATTAGCGGAGCAATCTCACCAGATCAAAGCTCAGGAGCATTC 489
Query 481 AAGGAGGTAGCAATTATCAGACATCCTCATATGGGAGAATACGCTTTTGGTTTCATTACA 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AAGGAGGTAGCGATTATCAGACATCCTCATATGGGAGAATACGCTTTTGGTTTCATTACA 549
Query 541 TCGACTGTGATTCTTCGAGGCCGTGCTGGTGGAGAAGAACTATGTTGTGTCTATGTTCCC 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 550 TCGACTGTGATTCTTCGAGGCCGTGCTGGTGGAGAAGAACTCTGTTGTGTCTATGTTCCC 609
Query 601 ACCAACCATCTTTACCTTGGAGACATTTTCCTCATTAGCTCAAAGGACATCATAAGACCT 660
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ACTAACCATCTTTATCTTGGAGACATTTTCCTCATTAGCTCAAAGGACATCATAAGACCT 669
Query 661 AATCTCTCAGTCCGGGAAGGCATAGAAATCGTCATCTCGGGTGGTATGTCGATTCCACAT 720
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 670 AATCTCTCAGTCCGGGAAGGCATAGAAATTGTCATCTCGGGTGGTATGTCGATTCCACAG 729
Query 721 ATGCTAACAACTCTGGAC 738
|| |||||||| ||||||
Sbjct 730 ATACTAACAACGCTGGAC 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5