BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18465.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480755 jgi|Araly1|480755|fgenesh2_kg.3__3456__AT2G18465.1 1613 0.0
> Ahg480755 jgi|Araly1|480755|fgenesh2_kg.3__3456__AT2G18465.1
Length=1184
Score = 1613 bits (873), Expect = 0.0
Identities = 1058/1145 (92%), Gaps = 22/1145 (2%)
Strand=Plus/Plus
Query 1 TCTCTCCCATTTCTTCCTCAAATCTCTCTTTTCACGCCAAATGAAAGTTTAAAACC-TTT 59
||||||||||||||||||||||||||||||||| || | ||||||| ||| ||||| |||
Sbjct 1 TCTCTCCCATTTCTTCCTCAAATCTCTCTTTTCGCGTC-AATGAAA-TTTTAAACCTTTT 58
Query 60 GAATTGT-TTATTGAAAGTTTACA-TTTTTCTGTTGAATCCAACTATGTTTAGATTGAGA 117
||||| | |||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 59 GAATT-TCTTATTGAAAGTTTACATTTTTTCTGTTGAATCCAACTATGTTAAGATTGAGA 117
Query 118 AGTCTCTTGTCGCTGAAGAGTTCTTCGATTGTAGAATTGTCATCACAAAACGTCACAGAA 177
||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 118 AGTCTCTTGTCGCTGAAAAGTTCTTCGATTGTAGAATTGTCATCACCAAACGCCACAGAA 177
Query 178 GCAATTCGTTTCGCTCCATTTCATTCGACAAGTGTTCTGTCTGAAAAATCGAGGAGTAGA 237
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| || |
Sbjct 178 GCAATTCGTTTCGCTCCATTTCATTCGACGAGTGTTTTGTCTGAGAAATCGAGGAATA-A 236
Query 238 -TTTGGTTCTGCTAGAGATTCCGAAGGCGAACGATCTTCAAAGAACTCCTCCATAAGATT 296
|||||||||| |||| ||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 237 CTTTGGTTCTGAAAGAGCTTCTGAAGGCGAAGGATCTTCAAAGAACTCTTCCATAAGATT 296
Query 297 TACATGTACCGTAAAGGAGAAGGGTCGTACCAGTGCTAAGAAGACTGTGGATAAACTCCT 356
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 CACATGTACTGTAAAGGAGAAGGGTCGTACTAGTGCTAAGAAGACTGTGGATAAACTCCT 356
Query 357 TTTCCACAGGGGAATTAATGATCCGCTTCAGAATGAGTGGCATTTCGGGCCAAGTCCGCT 416
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 357 CTTCCACAGGGGAATTAATGATCCGCTTCAGAATGAATGGCATTTCGGGCCAAATCCGCT 416
Query 417 TATCCGGGATAGGCATATGAAGAAAAAATCTCCGCCTGGCAGGGGAAAGAAGCCTCGAGA 476
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 417 TATCCGGGATAGGCATATGAAGAAAAAGCCTCCACCTGGCAGGGGAAAGAAGCCTCGGGA 476
Query 477 TAAGAAAACAAAACGATGGCACAGAGAAGGTAATCCGGACGATGATTTTGGCACTGATGC 536
|||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||
Sbjct 477 TAAGAAAACAAAACGATGGCACAGAGAAGGAAATCCCGATGATGACTTTGGTACTGATGC 536
Query 537 TAATAATACATTCGAGAACAAATGGAGAGAACGCTGGACAGCTCAATCTCAGAAGGCTTC 596
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 537 TAGTAATACATTCGAGAACAAATGGAGAGAACGCTGGACAACTCAATCTCAGAAGGCCTC 596
Query 597 ATATTCGAAAGACTCGACAGCGGGATTTGAATGGAGAGAAGGCTGGAGCTGGACCACTCA 656
||||||||||||||| || | |||||||||||||||||||| ||||||||||| |||||
Sbjct 597 CTATTCGAAAGACTCGGCATCTGGATTTGAATGGAGAGAAGGGTGGAGCTGGACAACTCA 656
Query 657 ATCTCAGAGGAGCAAAAGTTGGAATAAAGAGTCTTTTGATGAACCTTTGAACGTTGAGTT 716
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 657 ATCTCAAAGGAGCAAAAGTTGGAATAATGAGTCTTTTGATGAACCTTTGAACGTCGGGTC 716
Query 717 TAGGTCTGAGAGGATTGTTCTAGGATTGCCTCTTGATGGTCCCATCAAGGTTGATGATGT 776
| ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 717 TCGGTCTGAGAGGATTGTTCTGGGCTTGCCTCTTGATGGTCCCATCAAAATTGATGATGT 776
Query 777 TAAGAATGCCTTCCGATCTTCTGCGTTGAAGTGGCATCCAGATAAGCACCAGGGGCCTTC 836
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 TAAGAATGCCTTCCGATCTGCTGCGTTGAAGTGGCATCCGGATAAGCACCAGGGGCCTTC 836
Query 837 TCAGGTGGCAGCGCAAGAGAAATTCAAACTCTGTGTTGATGCATACAAGTCCCTCTGTTC 896
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 837 TCAGGCGGCAGCGCAAGAGAAATTTAAACTCTGTGTTGATGCATACAAGTCTCTCTGTTC 896
Query 897 TGCACTCGCTTGACGTTACACATAGGCATTGATGCACCATTTTAGCATTAGTTGATAAGG 956
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGCACTCGCTTGACGTTATACATAGGCATTGATGCACCATTTTAGCATTAGTTGATAAGG 956
Query 957 CTGCTTCTGAAACGTTTTCGAGAGATACACCGGTTTTTAGATGATGGGTTTGATTTGGTT 1016
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 CTGCTTCTGAAACGATTTCGAGAGATCCACCGGTTTTTAGATGATGGGTTTGATT----- 1011
Query 1017 CATGAGAATCCACCAGCTACAAGATTGCACACGGCACACCAATGTGTCTCTCGTCCTTTT 1076
|||||||||||||||| ||||||||||||||| || | |||||||||| |||||||
Sbjct 1012 CATGAGAATCCACCAGTTACAAGATTGCACAC--CA-A----TGTGTCTCTCATCCTTTT 1064
Query 1077 CCAACATTTGATAACAAAAACATG-TATGTGAAAGATTTATGCTAGTGCCCAACTTTTAG 1135
|||||||||||||||||||||| | ||||||||||||| ||||||||||||| || | ||
Sbjct 1065 CCAACATTTGATAACAAAAACAAGATATGTGAAAGATT-ATGCTAGTGCCCATCTCTGAG 1123
Query 1136 CTGAC 1140
|||||
Sbjct 1124 CTGAC 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5