BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18470.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906696 jgi|Araly1|906696|Al_scaffold_0003_3824 2905 0.0
> Ahg906696 jgi|Araly1|906696|Al_scaffold_0003_3824
Length=1923
Score = 2905 bits (1573), Expect = 0.0
Identities = 1813/1926 (94%), Gaps = 27/1926 (1%)
Strand=Plus/Plus
Query 115 ATGGCTTCTTCTCCTGAATCTG---CTCCTCCAACAAACTCCACCTCTTCTCCATCTCCA 171
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGCTTCTTCTCCTGATTCTGCTCCTCCTCCAACAAACTCCAGCTCTTCTCCATCTCCA 60
Query 172 CCGTCTAATACCAATTCAACCACCTCTTCTCCGCCGGCTCCGTCTCCTCCTTCTCCTACA 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTCTAATACCAATTCAACCACCTCTTCTCCGCCGGCTCCGTCTCCTCCTTCTCCTACT 120
Query 232 CCTCCTCAAGGAGACTCATCATCATCGCCACCTCCT-GATTCCACATCTCCACCAGCTCC 290
||||||||||||||||| ||||| || ||||||||| || |||||||||||||||||||
Sbjct 121 CCTCCTCAAGGAGACTCGTCATCGTCTCCACCTCCTGGA-TCCACATCTCCACCAGCTCA 179
Query 291 ACAAGCTCCTAAC-CCTCCTAATTCCTCTAATAAC-TCTCCTTCCCCTCCGTCACAGGGC 348
|||||||||| | |||||||||||||||||| || || ||||| || |||||||| |||
Sbjct 180 ACAAGCTCCT-TCTCCTCCTAATTCCTCTAAT-ACTTCGCCTTCACCACCGTCACAAGGC 237
Query 349 GGTGGAGGAGAAAGAGGAAATGGAGGAAACAATGGTGGCAATGATACTCCACCGTCACGC 408
||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||
Sbjct 238 GGTGGAGGAGAAAGAGGAAATGGAGGAAACAGTGGTGGAAATGATTCTCCACCGTCGCGC 297
Query 409 GGCTCTCCTCCTTCTCCTCCTTCTAGGAGTAATGGAGATAATGGTGGTAGCAGATCATCG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGCTCTCCTCCTTCTCCTCCTTCTAGGAGTAATGGAGATAATGGTGGTAGCAGATCATCG 357
Query 469 CCACCAGGAGACACTGGAGGCTCTCGCTCAGACAACCCTCCTTCTAGC----G-G--A-- 519
||||||||||||||||||||||||||||| ||||| |||||||||||| | | |
Sbjct 358 CCACCAGGAGACACTGGAGGCTCTCGCTCGGACAATCCTCCTTCTAGCGGAGGTGCCAGC 417
Query 520 GGAAGCAGTGGA---GGAGGTGGAGGTGGA--A-GAAGTAATACGAATACAGCGATCATA 573
|||||||||||| ||||| ||||| ||| | |||||||||||||||| |||||||||
Sbjct 418 GGAAGCAGTGGAGGTGGAGGAGGAGGAGGAGGAGGAAGTAATACGAATACGGCGATCATA 477
Query 574 GTTGGTGTATTAGTCGGAGCTGGACTTTTGATGATCGTTCTTATTATTGTGTGTCTTAGA 633
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 GTTGGTGTATTAGTCGGAGCTGGACTTTTGATGATCGTTCTTATTATTGTTTGTCTTAGA 537
Query 634 CGCAAAAAGAAGAGAAAAGACTCCTTCTACCCTGAACCCATGAAAGGAAACCAATATCAA 693
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 538 CGCAAAAAGAAGAGAAAAGATTCCTTCTACCCTGAATCCATGAAAGGAAATCAATATCAA 597
Query 694 TACTATGG--A-aacaacaacaacaacaaTGCTTCACAGAATTATCCGAATTGGCACCTA 750
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 TACTATGGAAACAACAACAACAACAACAATGCTTCACAGAATTATCCAAATTGGCACCTA 657
Query 751 AATTCACAAGGCCAAAACCAACAATCTACTGGTGGTTGGGGAGGCGGTGGACCATCACCG 810
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AATGCACAAGGCCAAAACCAACAATCTACTGGTGGTTGGGGAGGCGGTGGACCATCACCA 717
Query 811 CCTCCTCCTCCGCGGATGCCTACAAGCGGAGAAGATTCTTCCATGTACTCAGGCCCATCA 870
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 718 CCTCCTCCCCCGCGGATGCCTACAAGCGGAGAAGATTCTGCCTTGTACTCAGGCCCATCA 777
Query 871 CGCCCAGTTTTACCTCCTCCTTCGCCTGCTCTAGCCCTCGGATTCAACAAGAGCACTTTT 930
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 778 CGCCCGGTTTTACCTCCTCCTTCGCCTGCTCTAGCCCTCGGATTCAATAAGAGTACTTTT 837
Query 931 ACTTACCAAGAGCTTGCGGCTGCAACAGGAGGGTTTACGGATGCTAACCTTTTGGGACAG 990
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 838 ACTTACCAAGAGCTTGCGGCTGCAACGGGAGGGTTTACGGATGCTAACCTCTTGGGACAG 897
Query 991 GGAGGATTTGGGTATGTCCATAAAGGAGTCTTGCCTAGCGGGAAAGAAGTAGCAGTTAAG 1050
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 898 GGAGGATTCGGGTATGTCCATAAAGGAGTTTTGCCTAGTGGGAAAGAAGTAGCAGTTAAG 957
Query 1051 AGTTTAAAAGCGGGTAGCGGACAAGGAGAGAGGGAGTTTCAAGCTGAGGTCGATATCATT 1110
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGCTTAAAAGCGGGTAGCGGACAAGGAGAGAGGGAGTTTCAAGCTGAGGTCGATATCATT 1017
Query 1111 AGCCGTGTGCATCATCGGTATCTTGTTTCTTTGGTTGGATATTGCATAGCTGATGGACAG 1170
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 AGCCGTGTTCATCATCGATATCTTGTTTCTTTGGTTGGATACTGCATAGCTGATGGACAG 1077
Query 1171 AGGATGTTGGTTTATGAGTTTGTTCCTAACAAAACTTTGGAATATCATCTTCATGGGAAA 1230
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 AGGATGTTGGTTTATGAGTTTGTTCCTAACAATACTTTGGAATATCATCTTCATGGGAAA 1137
Query 1231 AATCTTCCGGTAATGGAGTTCTCCACTAGGTTGCGTATCGCCTTAGGTGCTGCGAAAGGA 1290
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1138 AATCTTCCGGTAATGGATTTCTCCACTAGATTGCGTATCGCCTTAGGTGCTGCTAAAGGA 1197
Query 1291 CTCGCTTACCTTCACGAAGACTGCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTCGCTTACCTTCACGAAGACTGCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCA 1257
Query 1351 AATATTCTCTTGGACTTCAACTTTGATGCTATGGTGGCTGATTTTGGATTAGCTAAGTTA 1410
|| |||||||||||||||||||||||||| |||||||||||||||||| | || ||||||
Sbjct 1258 AACATTCTCTTGGACTTCAACTTTGATGCAATGGTGGCTGATTTTGGACTGGCAAAGTTA 1317
Query 1411 ACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGATATCTAGCT 1470
|| ||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 1318 ACTTCTGATAACTACACTCATGTATCTACTCGTGTGATGGGAACTTTTGGTTATGTAGCA 1377
Query 1471 CCAGAATATGCTTCAAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGAGTT 1530
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1378 CCGGAATATGCATCGAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGTGTC 1437
Query 1531 ATGTTATTGGAACTTATAACTGGAAAACGACCGGTTGATAATAGCATCACCATGGACGAC 1590
|||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1438 ATGTTATTGGAACTGATCACTGGAAAACGACCGGTTGATAATAGCAGCACCATGGATGAC 1497
Query 1591 ACCTTAGTAGATTGGGCTCGGCCTCTTATGGCTCGCGCGCTAGAAGATGGAAACTTTAAT 1650
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1498 ACCTTAGTAGATTGGGCTCGGCCTCTTATGGCTCCCGCACTAGAAGATGGAAACTTTAAT 1557
Query 1651 GAGCTCGCAGATGCGAGGCTTGAAGGCAACTACAACCCGCAAGAAATGGCTCGAATGGTG 1710
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GAGCTCGCAGATGCAAGGCTTGAAGGCAACTACAACCCGCAAGAAATGGCTCGAATGGTG 1617
Query 1711 ACTTGTGCCGCTGCTAGCATTCGTCATTCGGGGCGTAAACGTCCAAAGATGAGCCAGATA 1770
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1618 ACTTGTGCCGCTGCTAGCATTCGCCATTCCGGGCGTAAACGTCCAAAGATGAGCCAGATA 1677
Query 1771 GTAAGAGCGTTAGAAGGAGAAGTGTCCTTAGATGCTTTAAACGAAGGTGTGAAGCCAGGA 1830
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GTAAGAGCATTAGAAGGAGAAGTGTCCTTAGATGCTTTAAACGAAGGTGTGAAGCCAGGA 1737
Query 1831 CACAGTAACGTTTACGGGTCATTGGGAGCAAGCTCGGATTATAGTCAGACATCTTACAAT 1890
|||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||
Sbjct 1738 CACAGTAACGTTTACGGGACATCGGGAACAAGTTCGGATTATAGTCAGACATCTTACAAT 1797
Query 1891 GCAGACATGAAGAAATTCAGACAGATAGCTTTGTCGAGCCAAGAATTCCCAGTCAGTGAC 1950
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1798 GCAGACATGAAGAAATTCAGACAGATAGCTTTATCGAGCCAAGAATTCCCAATCAGTGAC 1857
Query 1951 TGTGAAGGAACATCTAGTAATGATTCTAGAGATATGGGAACTAAGAGCCCTACTCCTCCA 2010
||||||||||||||||||||||||||| |||| |||||| |||| |||||| |||||||
Sbjct 1858 TGTGAAGGAACATCTAGTAATGATTCTCGAGAGATGGGACCTAAAAGCCCTGCTCCTCCT 1917
Query 2011 AAATGA 2016
|||||
Sbjct 1918 CAATGA 1923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5