BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18480.1
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906700 jgi|Araly1|906700|Al_scaffold_0003_3828 2381 0.0
> Ahg906700 jgi|Araly1|906700|Al_scaffold_0003_3828
Length=1515
Score = 2381 bits (1289), Expect = 0.0
Identities = 1434/1504 (95%), Gaps = 10/1504 (1%)
Strand=Plus/Plus
Query 13 ATGGTTCATGCTGATGGTCATAATTTTCCCGGTTCGGATCCAAA--CC-CTCATATGAAC 69
|||||||||||||||| ||||||||||||||| ||||||| ||| || |||||||||||
Sbjct 1 ATGGTTCATGCTGATGCTCATAATTTTCCCGGGTCGGATCAAAACCCCACTCATATGAAC 60
Query 70 AAGTTCGCTTTCGGGTGTGCCATTGTTGCTTCCATCATTTCTATCATCTTTGGATATGAT 129
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTTCGCTTGCGGGTGTGCCATTGTTGCTTCCATCATTTCTATCATCTTTGGATATGAT 120
Query 130 ACGGGAGTTATGAGCGGAGCTCAGATATTTATAAGAGATGATCTAAAAATAAACGACACT 189
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 121 ACGGGAGTTATGAGCGGAGCTCAGATATTTATAAGAGAGGATCTAAATTTAGACGACACT 180
Query 190 CAGATTGAAGTTTTGGCCGGAATCTTGAATCTTTGTGCACTCGTCGGATCACTAACGGCG 249
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CAGATCGAAGTTTTGGCCGGAATCTTGAATCTTTGTGCCCTCGTCGGATCACTAACGGCG 240
Query 250 GGGAAAACGTCTGACGTCATCGGCCGACGTTACACCATAGCTCTCTCCGCCGTGATATTC 309
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GGAAAAACTTCTGACGTCATCGGCCGACGTTACACCATTGCTCTCTCCGCCGTGATATTC 300
Query 310 TTAGTGGGCTCAGTTCTTATGGGTTACGGCCCAAACTATC-CTGTTTTGATGGTCGGACG 368
|||||||| ||||||||||||||||||||||||||||| | | ||||||||||||||| |
Sbjct 301 TTAGTGGGTTCAGTTCTTATGGGTTACGGCCCAAACTA-CGCCGTTTTGATGGTCGGAAG 359
Query 369 ATGTATTGCCGGAGTTGGTGTAGGGTTTGCTCTCATGATAGCTCCGGTTTACTCTGCCGA 428
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGTATCGCCGGGGTTGGTGTAGGGTTTGCTCTCATGATAGCTCCGGTTTACTCTGCCGA 419
Query 429 GATATCCTCTGCGTCACATAGAGGCTTTCTCACTTCTCTACCTGAGCTTTGTATTAGTCT 488
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATATCCTCTGCTTCACACAGAGGCTTTCTCACTTCTCTACCTGAGCTTTGTATTAGTCT 479
Query 489 TGGGATTTTACTAGGCTATGTCTCGAATTACTGTTTTGGGAAACTGACGTTGAAACTTGG 548
|||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 480 TGGGATTTTACTTGGTTATGTCTCGAATTACTGTTTTGGGAAATTGACGTTGAAGCTTGG 539
Query 549 ATGGAGATTGATGCTTGGAATCGCAGCGTTCCCGTCTTTGATATTGGCTTTTGGGATTAC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGGAGATTGATGCTTGGAATCGCAGCGTTCCCGTCTTTGATATTGGCTTTTGGGATTAC 599
Query 609 AAGAATGCCCGAGTCGCCGAGGTGGCTTGTGATGCAAGGTAGGTTAGAAGAAGCCAAGAA 668
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGAATGCCTGAGTCGCCGAGGTGGCTTGTGATGCAAGGTAGGTTAGAAGAAGCCAAGAA 659
Query 669 AATAATGGTTTTGGTATCCAATACGGAAGAAGAAGCTGAAGAACGGTTCAGAGACATCTT 728
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 660 AATAATGGTTTTGGTATCCAACACAGAAGAAGAAGCCGAAGAACGGTTCAGAGACATCTT 719
Query 729 AACCGCTGCGGAAGTAGATGTGACAGAGATAAAAGAAGTTG-GTGGCGGCGTTAAGAAGA 787
||||||||||||| |||||| || ||||||||||| || || |||||| |||| ||||
Sbjct 720 AACCGCTGCGGAAATAGATGAGATAGAGATAAAAGCAG-TGAGTGGCGCCGTT---AAGA 775
Query 788 AGAATCACGGTAAAAGTGTTTGGAGGGAGTTGGTGATAAAACCGCGACCTGCGGTGCGTT 847
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGAATCAAGGTAAAAGTGTTTGGAGGGAGTTGGTGATAAAACCGCGACCTGCGGTGCGTT 835
Query 848 TGATCTTGATAGCGGCCGTTGGGATACACTTTTTCGAGCATGCGACGGGGATTGAGGCCG 907
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 836 TGATCCTGATAGCGGCCGTTGGGATACACTTTTTCGAGCATGCGACGGGGATTGAAGCCG 895
Query 908 TCGTGTTGTACAGCCCGAGAATTTTCAAGAAAGCCGGAGTTGTTTCGAAAGACAAGCTCT 967
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 896 TCGTGTTGTACAGCCCGAGAATTTTCAAGAAAGCCGGAGTAGTTTCGAAAGACAAGCTCT 955
Query 968 TACTAGCCACGGTCGGTGTAGGTTTAACTAAGGCCTTTTTCATAATAATAGCCACTTTCT 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 956 TACTAGCCACGGTCGGTGTAGGTTTAACTAAGGCCTTTTTCATAATAATAGCTACTTTCT 1015
Query 1028 TGCTCGACAAGGTAGGTCGTAGAAAGCTCCTGTTGACCAGTACGGGTGGGATGGTCTTCG 1087
|||| |||||||||||||| |||||||| || |||||||| |||||||||||||||||||
Sbjct 1016 TGCTAGACAAGGTAGGTCGGAGAAAGCTTCTATTGACCAGCACGGGTGGGATGGTCTTCG 1075
Query 1088 CATTGACCAGTTTAGCGGTTAGTCTCACGATGGTTCAGCGATTTGGGCGGTTAGCGTGGG 1147
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CACTGACCAGTTTAGCGGTTAGTCTCACGATGGTTCAGCGATTTGGGCGGTTAGCGTGGG 1135
Query 1148 CATTGAGTTTAAGCATCGTCTCTACGTATGCATTTGTAGCTTTTTTCTCCATAGGGCTTG 1207
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1136 CATTGAGTTTAAGCATCGTCTCTACATATGCATTTGTAGCGTTTTTCTCCATTGGGCTTG 1195
Query 1208 GACCTATCACATGGGTGTACAGCTCCGAGATATTCCCGTTGAGACTTAGGGCTCAGGGAG 1267
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GGCCTATCACATGGGTGTATAGCTCCGAGATATTCCCGTTGAGACTTAGGGCTCAGGGAG 1255
Query 1268 CGAGTATAGGTGTTGCGGTTAATAGGATCATGAACGCGACGGTCTCAATGAGTTTTCTGT 1327
||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1256 TGAGCATATGCGTTGCGGTTAATAGGATCATGAATGCGACGGTCTCAATGAGTTTTCTAT 1315
Query 1328 CGATGACGAAGGCGATCACGACAGGGGGCGTGTTCTTCGTATTCGCCGGAATAGCGGTGG 1387
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1316 CCATGACGAAGGCGATCACGACAGGGGGCGTGTTCTTCGTATTCGCCGGAATAGCCGTGG 1375
Query 1388 CGGCATGGTGGTTCTTCTTCTTTATGTTGCCGGAGACGAAAGGATTGCCATTGGAGGAGA 1447
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CCGCATGGTGGTTCTTCTTCTTTATGTTGCCGGAGACGAAAGGATTGCCATTGGAGGAGA 1435
Query 1448 TGGAGAAGCTTTTTGGTGGTGGGGGTCCTCGTGGTGATCGTGACGGACTTGAGATTCAAA 1507
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1436 TGGAGAAGCTTTTTGGTGGTGGGGGTCCTCGTGGTGATCGCGACGGACTAGAGATTCAAA 1495
Query 1508 CTAA 1511
||||
Sbjct 1496 CTAA 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67495914140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5