BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18490.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931746 jgi|Araly1|931746|scaffold_304203.1 878 0.0
Ahg931747 jgi|Araly1|931747|scaffold_304204.1 542 2e-153
Ahg931310 jgi|Araly1|931310|scaffold_303767.1 532 1e-150
Ahg948883 jgi|Araly1|948883|scaffold_800770.1 449 1e-125
> Ahg931746 jgi|Araly1|931746|scaffold_304203.1
Length=1044
Score = 878 bits (475), Expect = 0.0
Identities = 658/745 (88%), Gaps = 18/745 (2%)
Strand=Plus/Plus
Query 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATTAAAGATAATCCT 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 258 ATGAGGAGAAACATTGATTATGTTTCTGGTACCGATTATTTGCCTATTAAAGATAATCCT 317
Query 61 CATCTTACTAGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTCCT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 318 CATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCTCCT 377
Query 121 ACCAATTCACTTGATGCTGTTCAATATGATATTGAACTTGTCAAACGTGCCATGGATTCT 180
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 378 GCCAATACACTTGATGCTGTTCAATATGATATTGAACGTGTCAAACGTGCCATGGATTCT 437
Query 181 AAACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTTGGTAAACAATGCGAG 240
||||||||||||||||||||| ||| || ||||||||||||||| |||||||||| ||
Sbjct 438 AAACCCAATATTTGGAATCCTACTTTACATTCTCCAAATTTTCTTGATAAACAATGCCAG 497
Query 241 ATTTTAAAC-CCTGAGCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGATCGTCA 299
||| | | | ||||||||||| ||||||||||| || | ||||||||||| |||||||||
Sbjct 498 ATTCTGA-CTCCTGAGCCTCTTAATGTCATTTTCCCGCGCCAAAATTCTGTAGATCGTCA 556
Query 300 ATATTTAAACATGTTT-TCCTTGTCATCAAAGCATAACCATGATCAAAATGTTT-TCCAT 357
| |||||||| | ||| ||||||||||| ||||||||||||||||||||| ||| || ||
Sbjct 557 ACATTTAAACTT-TTTCTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTGTC-AT 614
Query 358 GAAGGCCGATCTTCGACAAAAA-TCCCCAAACCAACCA-TGT--CCATTGAAAAAACTAC 413
|| || ||||||| | ||||| || | |||||||||| | | ||| |||||||||
Sbjct 615 GAGGGTCGATCTTTGG-AAAAAGTCTCTAAACCAACCACTTTTTCCA---AAAAAACTAA 670
Query 414 TGAATATATAGATTGTGAAGAAAACGAGAAAAGTGACGATGCTCAATATGATGGTCGAAT 473
||| |||||| |||||||| |||||||||||| |||||||| ||||||||||||||| |
Sbjct 671 TGATTATATACATTGTGAAAAAAACGAGAAAATTGACGATGATCAATATGATGGTCGGAC 730
Query 474 ACATAGTTTACCATATAAGAAATATGGTCCATATACATGTCCTAAGTGCAACAGTATATT 533
||||||| |||| ||| ||||||| ||||||||||||||||| || |||||| || ||||
Sbjct 731 ACATAGTCTACCGTATGAGAAATACGGTCCATATACATGTCCCAAATGCAACGGTGTATT 790
Query 534 TGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAGTGAAACGAATAA 593
| ||||||||||| |||||||||||||||||||||||||||||||| | || ||||| ||
Sbjct 791 TAATACTTCTCAACAATTTGCTGCACATATGTCATCTCACTACAAGGGCGAGACGAACAA 850
Query 594 AGAAAGAGCTCAAAGATTTCGTGCAAGAAATAAAAGAAAATATCGTAAATTGAATCTTGA 653
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 851 AGAAAGAGATCAAAGATTTCGTGCAAGGAATAAAAGAAAATATCGTAAATTGAATCCTGA 910
Query 654 AGTTTATGGGGAGTCTCAAAAGATTAAACAAGAAGATGGGGTCCATA-ATGATGGAAGGA 712
||| |||||||| ||||||||||| |||| ||||||||| || ||| | | | |||| |
Sbjct 911 AGTGTATGGGGAATCTCAAAAGATCAAACCAGAAGATGGAGTTAATAGAGG-TAGAAGAA 969
Query 713 GTGACGAC-AAACCTATTCAACATC 736
|||||| | |||| ||||||| |||
Sbjct 970 GTGACGGCGAAAC-TATTCAAAATC 993
> Ahg931747 jgi|Araly1|931747|scaffold_304204.1
Length=700
Score = 542 bits (293), Expect = 2e-153
Identities = 400/450 (89%), Gaps = 13/450 (3%)
Strand=Plus/Plus
Query 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATTAAAGATAATCCT 60
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 255 ATGAGAAGAAACATTGATTATGTTTCTGGTACCGATTATTTTCCTATTAAAGATAATCCT 314
Query 61 CATCTTACTAGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTCCT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 315 CATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCTCCT 374
Query 121 ACCAATTCACTTGATGCTGTTCAATATGATATTGAACTTGTCAAACGTGCCATGGATTCT 180
||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 375 GCCAATACAGTTGATGCTGTTCAATATGATATTGAACATGTCAAACGTGCCATGGATTCT 434
Query 181 AAACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTTGGTAAACAATGCGAG 240
||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||
Sbjct 435 AAACCCAATATTTGGAATCCTATTTTACATCCTCCAAATTTTCTTGATAAACAATGCCAG 494
Query 241 ATTTTAAAC-CCTGAGCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGATCGTCA 299
||| | | | ||||| ||||| ||||||||||| || ||||||||||||| |||||||||
Sbjct 495 ATTCTGA-CTCCTGAACCTCTTAATGTCATTTTCCCGCACCAAAATTCTGCAGATCGTCA 553
Query 300 ATATTTAAACATGTTTTCCTTGTCATCAAAGCATAACCATGATCAAAATGTTT-TCCATG 358
| |||||||| | |||||||||||||| ||||||||||||||||||||| ||| || |||
Sbjct 554 ACATTTAAACTTTTTTTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTGTC-ATG 612
Query 359 A-AGGCCGATCTTCGACAAAAA-TCCCCAAACCAACCATGTCCATT-GAAAAAACTACTG 415
| || | ||||| || ||||| |||||||||||||||| | || |||||| ||| ||
Sbjct 613 AGAGTCA-ATCTTTGA-AAAAAGTCCCCAAACCAACCATTTTT-TTCGAAAAA-CTAATG 668
Query 416 AATATATAGATTGTGAAGAAA-ACGAGAAA 444
| | |||||||| |||| ||| ||||||||
Sbjct 669 ATTTTATAGATTTTGAA-AAACACGAGAAA 697
> Ahg931310 jgi|Araly1|931310|scaffold_303767.1
Length=1033
Score = 532 bits (288), Expect = 1e-150
Identities = 575/713 (81%), Gaps = 22/713 (3%)
Strand=Plus/Plus
Query 35 ATTATTTGCCTATTAAAGATAATCCTCATCTTACTAGAGTTTCTTTCACTCAAACCATTA 94
||||||| ||||| ||| | ||||||||| |||| |||||||||||||| |||| |||||
Sbjct 283 ATTATTTTCCTATAAAAAACAATCCTCATTTTACCAGAGTTTCTTTCACACAAAGCATTA 342
Query 95 CTAATAGGTATAGTTCTATTGTTCCTACCAATTCACTTGATGCTGTTCAATATGATATTG 154
| |||||||||| ||||||||||||| ||| ||||||| ||| ||||||||||||
Sbjct 343 CAAATAGGTATACCGCTATTGTTCCTACTAATACACTTGACATTGTACAATATGATATTC 402
Query 155 AACTTGTCAAACGTGCCATGGATTCTAAACCCAATATTTGGAATCCT-GTTTTTTATCCT 213
||| |||||||||||||||| |||| ||| | ||||||||||||||| ||||| ||||
Sbjct 403 AACGTGTCAAACGTGCCATGTATTCCAAAACTAATATTTGGAATCCTAAATTTTT-TCCT 461
Query 214 CCAAAT-TTTCTTGGTAAACAATGCGAGA-TTTTAAACCCTGAGCCTCTAAATGTCATTT 271
|||||| ||| ||| |||||| || || | |||| || ||| | ||||| |||||||||
Sbjct 462 CCAAATATTT-TTGATAAACAGTGTGA-ACTTTTGAATCCTAAACCTCTTAATGTCATTG 519
Query 272 TTCCTCACCAAAATTCTGGAGA-TCGTCAATATTTAAACATGTTTTCCTTGTCATCAAAG 330
|||| | ||| |||||| | | || |||| ||||| |||||||||| |||||||||||
Sbjct 520 TTCCGCGTCAAGATTCTGCATATTC-TCAACATTTAGACATGTTTTCATTGTCATCAAAA 578
Query 331 CATAACCATGATCAAAATGTT-TTCCATGAAGG-CCGATCTTCGACA-AAAATCCCCAAA 387
|| ||| | | ||| |||| || || | || | | || || | |||||| |||
Sbjct 579 CACAACTACAACCAACGTGTTCCTCAAT-ATGGTTC-TTTTTTGA-AGAAAATCTTGAAA 635
Query 388 CCAACCATGTCCATTGAAAAAACTACTGAATATATAGATTGTGAAGAAAACGAGAAAAGT 447
||||||| || ||| || || |||||| ||||| || | ||||||||| |||||||||
Sbjct 636 CCAACCAAGTTTTTTGGAACAAGTACTGATTATATTGAGTCTGAAGAAAATGAGAAAAGT 695
Query 448 GACGATGCTCAATATGATGGTCGAATACATAGTTTACCATAT-AAGAAATATGGTCCATA 506
|||||| ||| ||||||||||| | ||||||| |||||||| || ||||||||||||||
Sbjct 696 AACGATGATCAGTATGATGGTCGGACACATAGTCTACCATATGAA-AAATATGGTCCATA 754
Query 507 TACATGTCCTAAGTGCAACAGTATATTTGATACTTCTCAAAAATTTGCTGCACATATGTC 566
||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 755 TACATGTCCCAAGTGCAATGGCGTATTCGATACTTCTCAAAAATTTGCTGCACATATGTC 814
Query 567 ATCTCACTACAAGAGTGAAACGAATAAAGAAAGAGCTCAAAGATTTCGTGCAA-GAAATA 625
|||||||||||||| |||||||| ||||||||| || ||| ||||||||| ||| |
Sbjct 815 ATCTCACTACAAGAATGAAACGAGCGAAGAAAGAGAACATAGACTTCGTGCAAAGAAC-A 873
Query 626 AAAGAAAATATCGTAAATTGAATCTTGAAGTTTATGGGGAGTCTCAAAAGAT-TAAACAA 684
||||||||||| ||||| | |||| ||| || |||| |||||||||||| | |||||||
Sbjct 874 AAAGAAAATATTGTAAACTAAATCACGAAATTCATGGTGAGTCTCAAAAG-TCTAAACAA 932
Query 685 GAAGATGGGGTCCATAATGATGGAAGGAGTGACGACAAACCTATTC-AACATC 736
|| |||| ||| | || | || || | |||||| ||| || ||| ||||||
Sbjct 933 GAGGATGTAGTCAACAACGGTGAAAAAAATGACGATAAAGCT-TTCCAACATC 984
> Ahg948883 jgi|Araly1|948883|scaffold_800770.1
Length=881
Score = 449 bits (243), Expect = 1e-125
Identities = 521/652 (80%), Gaps = 31/652 (5%)
Strand=Plus/Plus
Query 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATT-AAAGATAATCC 59
|||||||||||| |||||| | |||| || || | |||||| ||||| ||| ||||| |
Sbjct 189 ATGAGGAGAAACTTTGATTCTTTTTCTGGTGCCAAATATTTGTCTATTCAAA-ATAATTC 247
Query 60 TCATCTTACT-AGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTC 118
|||| ||||| | | ||||||| ||| ||||||| || |||||||||| | |||||||||
Sbjct 248 TCATATTACTCA-AATTTCTTTTACTGAAACCATCACAAATAGGTATACTACTATTGTTC 306
Query 119 CTACCAATTCACTTGATGCTGTT-CAATATGATATTGAACTTGTCAAACGTGCCATGGAT 177
|||||||| |||||||| | || ||| |||| ||| ||| |||||||||| ||||||||
Sbjct 307 CTACCAATACACTTGATAAT-TTCCAACATGAAATTAAACGTGTCAAACGTTCCATGGAT 365
Query 178 TCTAA-ACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTT-GGTAAACAAT 235
||||| | | ||||||||||||||||| | ||||||| |||||||| || | ||| || |
Sbjct 366 TCTAATA-CTAATATTTGGAATCCTGTATCTTATCCT-CAAATTTTTTTCGATAATCAGT 423
Query 236 GCGAGATTTTAAACCCTGA-GCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGAT 294
|||| ||||| || ||| | ||||| | |||||||| ||| | |||| |||||| | |
Sbjct 424 GCGAAATTTTGAATCCT-ACACCTCTTAGTGTCATTTATCCGCGCCAACATTCTGCTGCT 482
Query 295 CGTCAAT-ATTTAAACATGTT-TTCCTTGT-CATCAAAGCATAACCATGATCAAAATGTT 351
| || || ||| | | | || |||||| | |||||||| |||||||| || | |
Sbjct 483 CTTC-ATCATTCAGA-TTTTTCTTCCTT-TACATCAAAGTGTAACCATGTTCCTCACG-- 537
Query 352 TTCCATGAAGGCCGATCTTCGACA-AAAATCCCCAAACCAACCATGTC-CATTGAAAAAA 409
| | | | |||||||||| | ||||| ||||||||| || || |||||| ||
Sbjct 538 ---C-T--A-GTCGATCTTCGA-AGAAAATTTCCAAACCAA-CAAATCTTTTTGAAAGAA 588
Query 410 CTACTGAATATATAGATTGTGAAGAAAACGAGAAAAGTGACGATGCTCAATATGATGGTC 469
||||| | ||| | ||| ||||||| | ||||||||||| ||| |||||||||||| |
Sbjct 589 CTACTTATTATGTTCATTCTGAAGAAGATGAGAAAAGTGATGATAATCAATATGATGGAC 648
Query 470 GAATACATAGTTTACCATATAAGAAATATGGTCCATATACATGTCCTAAGTGCAACAGTA 529
| | ||||||| |||||||| |||||||||||||||||| ||||| |||||||| ||
Sbjct 649 GTACACATAGTATACCATATGTGAAATATGGTCCATATACGTGTCCCAAGTGCAATGGTG 708
Query 530 TATTTGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAGTGAAACGA 589
| ||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 709 TGTTTGACACTTCTCAAAGATTTGCTGCACATATGTTATCTCACTACAACAGTGAGACGA 768
Query 590 ATAAAGAAAGAGCTCAAAGATTTCGTGCAAGAAATAAAAGAAAATATCGTAA 641
| ||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 769 ACAAAGAAAAAGCTTTGAGATTTCGTGCAAGAAATAAAAGAAAATTTCGTAA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5