BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18490.1 Length=756 Score E Sequences producing significant alignments: (Bits) Value Ahg931746 jgi|Araly1|931746|scaffold_304203.1 878 0.0 Ahg931747 jgi|Araly1|931747|scaffold_304204.1 542 2e-153 Ahg931310 jgi|Araly1|931310|scaffold_303767.1 532 1e-150 Ahg948883 jgi|Araly1|948883|scaffold_800770.1 449 1e-125 > Ahg931746 jgi|Araly1|931746|scaffold_304203.1 Length=1044 Score = 878 bits (475), Expect = 0.0 Identities = 658/745 (88%), Gaps = 18/745 (2%) Strand=Plus/Plus Query 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATTAAAGATAATCCT 60 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 258 ATGAGGAGAAACATTGATTATGTTTCTGGTACCGATTATTTGCCTATTAAAGATAATCCT 317 Query 61 CATCTTACTAGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTCCT 120 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 318 CATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCTCCT 377 Query 121 ACCAATTCACTTGATGCTGTTCAATATGATATTGAACTTGTCAAACGTGCCATGGATTCT 180 ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 378 GCCAATACACTTGATGCTGTTCAATATGATATTGAACGTGTCAAACGTGCCATGGATTCT 437 Query 181 AAACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTTGGTAAACAATGCGAG 240 ||||||||||||||||||||| ||| || ||||||||||||||| |||||||||| || Sbjct 438 AAACCCAATATTTGGAATCCTACTTTACATTCTCCAAATTTTCTTGATAAACAATGCCAG 497 Query 241 ATTTTAAAC-CCTGAGCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGATCGTCA 299 ||| | | | ||||||||||| ||||||||||| || | ||||||||||| ||||||||| Sbjct 498 ATTCTGA-CTCCTGAGCCTCTTAATGTCATTTTCCCGCGCCAAAATTCTGTAGATCGTCA 556 Query 300 ATATTTAAACATGTTT-TCCTTGTCATCAAAGCATAACCATGATCAAAATGTTT-TCCAT 357 | |||||||| | ||| ||||||||||| ||||||||||||||||||||| ||| || || Sbjct 557 ACATTTAAACTT-TTTCTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTGTC-AT 614 Query 358 GAAGGCCGATCTTCGACAAAAA-TCCCCAAACCAACCA-TGT--CCATTGAAAAAACTAC 413 || || ||||||| | ||||| || | |||||||||| | | ||| ||||||||| Sbjct 615 GAGGGTCGATCTTTGG-AAAAAGTCTCTAAACCAACCACTTTTTCCA---AAAAAACTAA 670 Query 414 TGAATATATAGATTGTGAAGAAAACGAGAAAAGTGACGATGCTCAATATGATGGTCGAAT 473 ||| |||||| |||||||| |||||||||||| |||||||| ||||||||||||||| | Sbjct 671 TGATTATATACATTGTGAAAAAAACGAGAAAATTGACGATGATCAATATGATGGTCGGAC 730 Query 474 ACATAGTTTACCATATAAGAAATATGGTCCATATACATGTCCTAAGTGCAACAGTATATT 533 ||||||| |||| ||| ||||||| ||||||||||||||||| || |||||| || |||| Sbjct 731 ACATAGTCTACCGTATGAGAAATACGGTCCATATACATGTCCCAAATGCAACGGTGTATT 790 Query 534 TGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAGTGAAACGAATAA 593 | ||||||||||| |||||||||||||||||||||||||||||||| | || ||||| || Sbjct 791 TAATACTTCTCAACAATTTGCTGCACATATGTCATCTCACTACAAGGGCGAGACGAACAA 850 Query 594 AGAAAGAGCTCAAAGATTTCGTGCAAGAAATAAAAGAAAATATCGTAAATTGAATCTTGA 653 |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 851 AGAAAGAGATCAAAGATTTCGTGCAAGGAATAAAAGAAAATATCGTAAATTGAATCCTGA 910 Query 654 AGTTTATGGGGAGTCTCAAAAGATTAAACAAGAAGATGGGGTCCATA-ATGATGGAAGGA 712 ||| |||||||| ||||||||||| |||| ||||||||| || ||| | | | |||| | Sbjct 911 AGTGTATGGGGAATCTCAAAAGATCAAACCAGAAGATGGAGTTAATAGAGG-TAGAAGAA 969 Query 713 GTGACGAC-AAACCTATTCAACATC 736 |||||| | |||| ||||||| ||| Sbjct 970 GTGACGGCGAAAC-TATTCAAAATC 993 > Ahg931747 jgi|Araly1|931747|scaffold_304204.1 Length=700 Score = 542 bits (293), Expect = 2e-153 Identities = 400/450 (89%), Gaps = 13/450 (3%) Strand=Plus/Plus Query 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATTAAAGATAATCCT 60 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 255 ATGAGAAGAAACATTGATTATGTTTCTGGTACCGATTATTTTCCTATTAAAGATAATCCT 314 Query 61 CATCTTACTAGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTCCT 120 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 315 CATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCTCCT 374 Query 121 ACCAATTCACTTGATGCTGTTCAATATGATATTGAACTTGTCAAACGTGCCATGGATTCT 180 ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 375 GCCAATACAGTTGATGCTGTTCAATATGATATTGAACATGTCAAACGTGCCATGGATTCT 434 Query 181 AAACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTTGGTAAACAATGCGAG 240 ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| || Sbjct 435 AAACCCAATATTTGGAATCCTATTTTACATCCTCCAAATTTTCTTGATAAACAATGCCAG 494 Query 241 ATTTTAAAC-CCTGAGCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGATCGTCA 299 ||| | | | ||||| ||||| ||||||||||| || ||||||||||||| ||||||||| Sbjct 495 ATTCTGA-CTCCTGAACCTCTTAATGTCATTTTCCCGCACCAAAATTCTGCAGATCGTCA 553 Query 300 ATATTTAAACATGTTTTCCTTGTCATCAAAGCATAACCATGATCAAAATGTTT-TCCATG 358 | |||||||| | |||||||||||||| ||||||||||||||||||||| ||| || ||| Sbjct 554 ACATTTAAACTTTTTTTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTGTC-ATG 612 Query 359 A-AGGCCGATCTTCGACAAAAA-TCCCCAAACCAACCATGTCCATT-GAAAAAACTACTG 415 | || | ||||| || ||||| |||||||||||||||| | || |||||| ||| || Sbjct 613 AGAGTCA-ATCTTTGA-AAAAAGTCCCCAAACCAACCATTTTT-TTCGAAAAA-CTAATG 668 Query 416 AATATATAGATTGTGAAGAAA-ACGAGAAA 444 | | |||||||| |||| ||| |||||||| Sbjct 669 ATTTTATAGATTTTGAA-AAACACGAGAAA 697 > Ahg931310 jgi|Araly1|931310|scaffold_303767.1 Length=1033 Score = 532 bits (288), Expect = 1e-150 Identities = 575/713 (81%), Gaps = 22/713 (3%) Strand=Plus/Plus Query 35 ATTATTTGCCTATTAAAGATAATCCTCATCTTACTAGAGTTTCTTTCACTCAAACCATTA 94 ||||||| ||||| ||| | ||||||||| |||| |||||||||||||| |||| ||||| Sbjct 283 ATTATTTTCCTATAAAAAACAATCCTCATTTTACCAGAGTTTCTTTCACACAAAGCATTA 342 Query 95 CTAATAGGTATAGTTCTATTGTTCCTACCAATTCACTTGATGCTGTTCAATATGATATTG 154 | |||||||||| ||||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 343 CAAATAGGTATACCGCTATTGTTCCTACTAATACACTTGACATTGTACAATATGATATTC 402 Query 155 AACTTGTCAAACGTGCCATGGATTCTAAACCCAATATTTGGAATCCT-GTTTTTTATCCT 213 ||| |||||||||||||||| |||| ||| | ||||||||||||||| ||||| |||| Sbjct 403 AACGTGTCAAACGTGCCATGTATTCCAAAACTAATATTTGGAATCCTAAATTTTT-TCCT 461 Query 214 CCAAAT-TTTCTTGGTAAACAATGCGAGA-TTTTAAACCCTGAGCCTCTAAATGTCATTT 271 |||||| ||| ||| |||||| || || | |||| || ||| | ||||| ||||||||| Sbjct 462 CCAAATATTT-TTGATAAACAGTGTGA-ACTTTTGAATCCTAAACCTCTTAATGTCATTG 519 Query 272 TTCCTCACCAAAATTCTGGAGA-TCGTCAATATTTAAACATGTTTTCCTTGTCATCAAAG 330 |||| | ||| |||||| | | || |||| ||||| |||||||||| ||||||||||| Sbjct 520 TTCCGCGTCAAGATTCTGCATATTC-TCAACATTTAGACATGTTTTCATTGTCATCAAAA 578 Query 331 CATAACCATGATCAAAATGTT-TTCCATGAAGG-CCGATCTTCGACA-AAAATCCCCAAA 387 || ||| | | ||| |||| || || | || | | || || | |||||| ||| Sbjct 579 CACAACTACAACCAACGTGTTCCTCAAT-ATGGTTC-TTTTTTGA-AGAAAATCTTGAAA 635 Query 388 CCAACCATGTCCATTGAAAAAACTACTGAATATATAGATTGTGAAGAAAACGAGAAAAGT 447 ||||||| || ||| || || |||||| ||||| || | ||||||||| ||||||||| Sbjct 636 CCAACCAAGTTTTTTGGAACAAGTACTGATTATATTGAGTCTGAAGAAAATGAGAAAAGT 695 Query 448 GACGATGCTCAATATGATGGTCGAATACATAGTTTACCATAT-AAGAAATATGGTCCATA 506 |||||| ||| ||||||||||| | ||||||| |||||||| || |||||||||||||| Sbjct 696 AACGATGATCAGTATGATGGTCGGACACATAGTCTACCATATGAA-AAATATGGTCCATA 754 Query 507 TACATGTCCTAAGTGCAACAGTATATTTGATACTTCTCAAAAATTTGCTGCACATATGTC 566 ||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||| Sbjct 755 TACATGTCCCAAGTGCAATGGCGTATTCGATACTTCTCAAAAATTTGCTGCACATATGTC 814 Query 567 ATCTCACTACAAGAGTGAAACGAATAAAGAAAGAGCTCAAAGATTTCGTGCAA-GAAATA 625 |||||||||||||| |||||||| ||||||||| || ||| ||||||||| ||| | Sbjct 815 ATCTCACTACAAGAATGAAACGAGCGAAGAAAGAGAACATAGACTTCGTGCAAAGAAC-A 873 Query 626 AAAGAAAATATCGTAAATTGAATCTTGAAGTTTATGGGGAGTCTCAAAAGAT-TAAACAA 684 ||||||||||| ||||| | |||| ||| || |||| |||||||||||| | ||||||| Sbjct 874 AAAGAAAATATTGTAAACTAAATCACGAAATTCATGGTGAGTCTCAAAAG-TCTAAACAA 932 Query 685 GAAGATGGGGTCCATAATGATGGAAGGAGTGACGACAAACCTATTC-AACATC 736 || |||| ||| | || | || || | |||||| ||| || ||| |||||| Sbjct 933 GAGGATGTAGTCAACAACGGTGAAAAAAATGACGATAAAGCT-TTCCAACATC 984 > Ahg948883 jgi|Araly1|948883|scaffold_800770.1 Length=881 Score = 449 bits (243), Expect = 1e-125 Identities = 521/652 (80%), Gaps = 31/652 (5%) Strand=Plus/Plus Query 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATT-AAAGATAATCC 59 |||||||||||| |||||| | |||| || || | |||||| ||||| ||| ||||| | Sbjct 189 ATGAGGAGAAACTTTGATTCTTTTTCTGGTGCCAAATATTTGTCTATTCAAA-ATAATTC 247 Query 60 TCATCTTACT-AGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTC 118 |||| ||||| | | ||||||| ||| ||||||| || |||||||||| | ||||||||| Sbjct 248 TCATATTACTCA-AATTTCTTTTACTGAAACCATCACAAATAGGTATACTACTATTGTTC 306 Query 119 CTACCAATTCACTTGATGCTGTT-CAATATGATATTGAACTTGTCAAACGTGCCATGGAT 177 |||||||| |||||||| | || ||| |||| ||| ||| |||||||||| |||||||| Sbjct 307 CTACCAATACACTTGATAAT-TTCCAACATGAAATTAAACGTGTCAAACGTTCCATGGAT 365 Query 178 TCTAA-ACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTT-GGTAAACAAT 235 ||||| | | ||||||||||||||||| | ||||||| |||||||| || | ||| || | Sbjct 366 TCTAATA-CTAATATTTGGAATCCTGTATCTTATCCT-CAAATTTTTTTCGATAATCAGT 423 Query 236 GCGAGATTTTAAACCCTGA-GCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGAT 294 |||| ||||| || ||| | ||||| | |||||||| ||| | |||| |||||| | | Sbjct 424 GCGAAATTTTGAATCCT-ACACCTCTTAGTGTCATTTATCCGCGCCAACATTCTGCTGCT 482 Query 295 CGTCAAT-ATTTAAACATGTT-TTCCTTGT-CATCAAAGCATAACCATGATCAAAATGTT 351 | || || ||| | | | || |||||| | |||||||| |||||||| || | | Sbjct 483 CTTC-ATCATTCAGA-TTTTTCTTCCTT-TACATCAAAGTGTAACCATGTTCCTCACG-- 537 Query 352 TTCCATGAAGGCCGATCTTCGACA-AAAATCCCCAAACCAACCATGTC-CATTGAAAAAA 409 | | | | |||||||||| | ||||| ||||||||| || || |||||| || Sbjct 538 ---C-T--A-GTCGATCTTCGA-AGAAAATTTCCAAACCAA-CAAATCTTTTTGAAAGAA 588 Query 410 CTACTGAATATATAGATTGTGAAGAAAACGAGAAAAGTGACGATGCTCAATATGATGGTC 469 ||||| | ||| | ||| ||||||| | ||||||||||| ||| |||||||||||| | Sbjct 589 CTACTTATTATGTTCATTCTGAAGAAGATGAGAAAAGTGATGATAATCAATATGATGGAC 648 Query 470 GAATACATAGTTTACCATATAAGAAATATGGTCCATATACATGTCCTAAGTGCAACAGTA 529 | | ||||||| |||||||| |||||||||||||||||| ||||| |||||||| || Sbjct 649 GTACACATAGTATACCATATGTGAAATATGGTCCATATACGTGTCCCAAGTGCAATGGTG 708 Query 530 TATTTGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAGTGAAACGA 589 | ||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| |||| Sbjct 709 TGTTTGACACTTCTCAAAGATTTGCTGCACATATGTTATCTCACTACAACAGTGAGACGA 768 Query 590 ATAAAGAAAGAGCTCAAAGATTTCGTGCAAGAAATAAAAGAAAATATCGTAA 641 | ||||||| |||| |||||||||||||||||||||||||||| |||||| Sbjct 769 ACAAAGAAAAAGCTTTGAGATTTCGTGCAAGAAATAAAAGAAAATTTCGTAA 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27867852327 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5