BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18500.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480758 jgi|Araly1|480758|fgenesh2_kg.3__3459__AT2G18500.1 1533 0.0
> Ahg480758 jgi|Araly1|480758|fgenesh2_kg.3__3459__AT2G18500.1
Length=1163
Score = 1533 bits (830), Expect = 0.0
Identities = 1080/1193 (91%), Gaps = 48/1193 (4%)
Strand=Plus/Plus
Query 32 CTCca-acaaaac-acaaaaaacaagaaaagaaaaaaaaaTGACGAAACGTTTCAAATTA 89
||||| ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 13 CTCCACACAAAACAAAAAAAAACAAGAAAAG--AAAAAAATGACAAAACGTTTCAAATTA 70
Query 90 AAGATTTCAAGAATCCTCTCATTCAAATCTTGCCGTTTAAAAGATCCTTCTTCTCTTCCT 149
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 71 AAGATTTCAAGAATCCTCTCATTCAAATCTTGCCGTTCAAAAGATCCTTCTTCTCTTCCT 130
Query 150 TTTAATCCTGTTTCTTCAAGTCTCCGACGTACTTCTCCACTGGTTAACTCCTCCGCCGAC 209
|||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| |
Sbjct 131 TTTAATCCTGTTCCTTCAAGTCTCCGTCGTACTCCTCCACCGGTTAACTCCTCCGCCGTC 190
Query 210 GTCACCACCGTGCCGCAACGTCGCCGTTCTTCTTTCAGACTACACGTTTTAACTGTGTTT 269
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 191 GTCACCACCGTGCCAAAACGTCGTCGTTCTTCTTTCAGACTACACGTTTTAACCGTGTTT 250
Query 270 GGCTGCGGACGCTCGTCCACGCCGTTGGATGTTGATCTGAGAAACTCACCGGTGTTATCT 329
|||||||||||||| ||||||||||||||||||||||||| || || |||| |||||||
Sbjct 251 GGCTGCGGACGCTCACCCACGCCGTTGGATGTTGATCTGAGGAATTCGCCGGCGTTATCT 310
Query 330 CCGCCGCAAACGCCGACGTTTCAGTGGGAAAGTGAAGGGAAGTGGCACGTGATTGCTCAA 389
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CCGCCGCTAACGCCGACGTTTCAGTGGGAAAGTGAAGGGAAGTGGCACGTGATTGCTCAA 370
Query 390 GTCACTGAAGAAGAATACGAAACGCCTCGTCGGAAAATATACAACGGTGGGTCGGAGAAA 449
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 371 GTCACTGAAGAAGAATACGAGACGCCTCGTCGGAAAATATACGACGGTGGATCGGAGAAA 430
Query 450 GATAATCGCCGGCGTTTAAAGAAGAAGGAGAAATCAAACTCTCGGCGGCGAGGGAGCATT 509
|||||||||||| |||||||||||||||||| ||||| |||||||||| |||||||| ||
Sbjct 431 GATAATCGCCGGTGTTTAAAGAAGAAGGAGAGATCAACCTCTCGGCGGGGAGGGAGCGTT 490
Query 510 TCCTCCGCCGAAGAAGAGACTGATAGAGAGAGTCTCTTACCATCTTCTACAAACCTCTCG 569
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 491 TCCTCCGCCGAAGAAGAGACGGATAGAGAGAGTCTCTTACCATCTTCTACAGATCTCTCG 550
Query 570 CCGGAATATTCCTCTTCCGAGCTACCGCGTGTCACAAGACGTCCGAGACAACTTCTCAAG 629
|||||||||||||| || ||||| || ||||| |||||||| | |||| |||||||||||
Sbjct 551 CCGGAATATTCCTCCTCAGAGCTGCCACGTGTTACAAGACGACGGAGAAAACTTCTCAAG 610
Query 630 AAGGCGGTGATCGAGGAAGAAAGTGAATCATCATCACCGCCACCGTCTCCGGCGAGACTG 689
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 611 AAAGCAGTGATTGAGGAAGAAAGTGAATCATCATCACCGCCACCGTCTCCGGCTAGACTG 670
Query 690 TCTTCGTTTGTGCAGAGATTAATGCCGTGTACGATGGCGGCGGCGGTTATGGTGGAAGGA 749
||||||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 671 TCTTCGTTTGTTCAAAGATTGATGCCGTGTACGACGGCGGCGGCGGTTATGGTGGAAGGA 730
Query 750 GTGGCGGTGGTGAAGAAATCGGAGGATCCATACGAAGATTTTAAAGGATCAATGATGGAG 809
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 731 GTGGCGGTGGTGAAGAGATCGGAGGATCCATACGAAGATTTCAAAGGATCAATGATGGAG 790
Query 810 ATGATAGTAGAGAAGAAGATGTTTGAAGTAGCTGAGCTTGAACAGCTTCTTAGTTGCTTC 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ATGATAGTAGAGAAGAAGATGTTTGAAGTAGCTGAGCTTGAACAGCTTCTTAGTTGCTTC 850
Query 870 CTATCGCTAAACGCGAAACGCCACCACCGCGCGATTGTAAGAGCGTTTTCAGAGATTTGG 929
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 851 CTATCGCTAAACGCGAAACGCCACCACCGCGCGATTGTAAGAGCGTTTTCAGAGATATGG 910
Query 930 GTTGCTTTGTTCTCCGGTGGT-A--GTGGTGGTGGTCGGAGATCGTCCTCCTTCTCGAGT 986
|||||||||||| |||||||| | |||||||||||||||| ||||| ||||||||||||
Sbjct 911 GTTGCTTTGTTCGCCGGTGGTAATGGTGGTGGTGGTCGGAGGTCGTCTTCCTTCTCGAGT 970
Query 987 GTTCGACTCTCAGACTACGATGAGTGTTAAAATAATAATGTTAAAAATTAAAATCCTCTG 1046
|||||| || || || || ||| || | ||||||||| | ||| ||
Sbjct 971 GTTCGA--CT----CT-CG--GA---TTACGAT--GAGTGTTAAAAA-T--AAT--AATG 1011
Query 1047 TTTATGATAATGTCTAACTAAATTCTACTAAAtttttttCACTTTTAGTGACGATGTAAA 1106
||||||||||||||||||||| | | || | || | || | | ||||
Sbjct 1012 -TTATGATAATGTCTAACTAAA-T-T-CT--A-------GAC-GAT-GT-A--A-ATAAA 1052
Query 1107 TGTTAAATGTAAATTATGCGGCGGTGCAATTATTAAAACTGTAATCA-TTAAATGCGTAG 1165
|||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 1053 TGTT-AATGTAAATTATGCGGCGGTGCAATTATTAAAACTTTAATCATTTATATGCGTAG 1111
Query 1166 GCTAATTAAAATATTGTATTTGTGCGATTTAGATTCTAATGCATAGATTGCAT 1218
||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1112 GCTAATTAAAATA-TGTATTTGTACGATTTAGATTCTAATGCATAGATTGCAT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5