BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18510.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480759 jgi|Araly1|480759|fgenesh2_kg.3__3460__AT2G18510.1 2423 0.0
Ahg906179 jgi|Araly1|906179|Al_scaffold_0003_3307 1131 0.0
> Ahg480759 jgi|Araly1|480759|fgenesh2_kg.3__3460__AT2G18510.1
Length=1550
Score = 2423 bits (1312), Expect = 0.0
Identities = 1495/1577 (95%), Gaps = 38/1577 (2%)
Strand=Plus/Plus
Query 1 TAACTTCTAGAAAAATCGCCAGAAGTGACGAAATTGAAAATCTCAGATTTCTCTTAATCG 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1 TAACTTCTAGAAAAATCGCCAGAAGTGACGAAATTGAAAACCTCAGATTTCTC--AATCG 58
Query 61 GCGACGGAGTAACGAAACAAGGagaagaagaagaagaagaaAATGACGACTCGAATCGCT 120
|||||||||||||||||| | ||| ||||||||||| ||||||||||||||||||
Sbjct 59 GCGACGGAGTAACGAAAC----A-AAG-AGAAGAAGAAG---ATGACGACTCGAATCGCT 109
Query 121 CCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAGAGGAACCAAGACGCCACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAGAGGAACCAAGACGCCACT 169
Query 181 GTTTACGTCGGTGGTCTCGATGCTCAGCTTTCTGAAGAATTGCTTTGGGAATTGTTCGTT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GTTTACGTCGGCAATCTCGATGCTCAGCTTTCTGAAGAATTGCTTTGGGAATTGTTCGTT 229
Query 241 CAAGCTGGACCTGTTGTTAATGTCTATGTACCGAAAGATAGAGTGACAAATCTTCATCAG 300
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 230 CAAGCTGGTCCTGTTGTTAATGTCTATGTTCCGAAAGATAGAGTGACAAATCTTCATCAG 289
Query 301 AACTATGGATTCATTGAATATCGTAGTGAGGAAGATGCTGATTATGCGATTAAGGTTCTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 AACTATGGATTCATTGAATATCGTAGTGAGGAAGATGCTGATTATGCGATTAAGGTTCTC 349
Query 361 AACATGATTAAGCTCCACGGGAAGCCTATACGTGTTAACAAGGCATCTCAAGATAAGAAG 420
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AACATGATTAAGGTACATGGGAAGCCTATACGTGTTAACAAGGCATCTCAAGATAAGAAA 409
Query 421 AGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCTGATGTGGATGAGAAG 480
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 410 AGCTTGGATGTTGGTGCTAACCTTTTCATTGGGAACCTTGACCCTGATGTGGATGAGAAG 469
Query 481 CTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGATAATGAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGATAATGAGA 529
Query 541 GATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCATCAGCTATGACTCCTTTGAAGCA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 530 GATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCATCAGCTATGACTCCTTTGAGGCA 589
Query 601 TCTGATGCTGCTATTGAGTCAATGACTGGACAATATCTCAGTAATCGTCAAATCACAGTC 660
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 590 TCTGATGCGGCTATCGAGGCAATGACTGGACAATATCTCAGTAATCGTCAAATAACAGTC 649
Query 661 TCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCCATGGTACTCCAGCAGAGAGGCTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCCATGGTACTCCAGCAGAGAGGCTT 709
Query 721 TTGGCAGCCACAAATCCAACTGCCCAGAAAAGCAGACCCCATACGCTATTCGCAATG-GG 779
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 710 TTGGCAGCCACAAATCCAGCTGCCCAGAAAAGCAGACCCCATACGCTATTCGCAA-GTGG 768
Query 780 CCCTCCATCCAGTGCTCCTCAAGTTAATGGTCTACCACGTCCGTTTGCTAACGGCAGCAT 839
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CCCTCCATCCAATGCTCCTCAAGTTAATGGTCTACCACGTCCGTTTGCTAACGGCAGCAT 828
Query 840 GCAACCTGTCCCGATTCCC-GCTCCCCGTCAACCACCACCACCTCCTCCACAAGTATATC 898
|||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 829 GCAACCTGTCCCGA-TCCCAGCCCCCCGTCAACCACCACCACCACCTCCACAAGTATATC 887
Query 899 AAACTCAGCCACCATCCTGGCCATCTCAGCCACAACAACACAGCATGGTCCCACCACCCA 958
|||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||
Sbjct 888 AAACTCAGCCACCATCCTGGCCATCTCAGCCACAACAACAGGGCTTTGTCCCACCGCCCA 947
Query 959 TGCAATTCCGTCCACCTCAGGGTATGCCTCCGCCACCACCTCCTCAGTTTCTAAATCACC 1018
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TGCAATTCCGTCCGCCTCAAGGTATGCCTCCGCCACCACCTCCTCAGTTTCTAAATCACC 1007
Query 1019 AACAAGGTTTCGGTGGTCCGAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AACAAGGTTTCGGTGGTCCGAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAAC 1067
Query 1079 ATGGAGGATGGCCACCGCAACACATGCAGCAGCAAGGTGGaccaccacaacaacaacaac 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 ATGGAGGATGGCCACCGCAACACATGCAGCAGCAAGGTGGACCACCACAACAACAACAAC 1127
Query 1139 cacca---taccaacaccatcacatgtctatgcctccaccaccaccacaccaaGGTTGAT 1195
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CACCACCATACCAACACCATCACATGTCTATGCCTCCACCACCACCACACCAAGGTTGAT 1187
Query 1196 AATAATCATCGCCTCAGTTTCGGACCAATTCAACTATATGTAAACCCTTTCTTT-ACTGG 1254
| |||||||| | ||||| ||| ||||| |||||||| |||||||||||||||| | ||
Sbjct 1188 AGTAATCATCTCTTCAGTCTCGAACCAAATCAACTATTTGTAAACCCTTTCTTTCA-TGA 1246
Query 1255 CAAGTAATCCCGAGGATTTT-CCGTTTTAGATTCAATGAAACCTAATAGGgagagagaga 1313
||||||||| | |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1247 CAAGTAATCACAAGGATTTTGCC-TTTTAGATTCAATGAAACCT--TAGGGAGAGAGAGA 1303
Query 1314 aagagaaagagagagggtgagagagagaTCACAATTAATATTCTATATTGTCTTGTCTGC 1373
||||| ||||||| | | | | | |||||||||||||| |||||||||||||||
Sbjct 1304 GAGAGAGAGAGAGA-----A-A-A-A-A-CACAATTAATATTCCCTATTGTCTTGTCTGC 1353
Query 1374 AGAGAATCTCTTATCTTCGGTTTagagagagagagag----CGTAGAAATTAGTGCCAAT 1429
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1354 AGAGAATCTCTTATCTTCGGTTTAGAGAGAGAGAGAGAGAGCGTAGAAATTAGTGCCAAT 1413
Query 1430 GTGTGTCTGGTTTTTAGTGATGTTATTTCTTGTTTGTGTTGCAGAATCTCTGATGCCGTG 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 GTGTGTCTGGTTTTTAGTGATGTTATTTCTTGTTTGTGTTGCAGAATCTCTGATGCCGTG 1473
Query 1490 TGCTTTAATATTTACCAAAACTGTGCTGTAAAATCTCAATAATTTTACTTCTGACCTTTG 1549
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1474 TGCTTTAATATTTACCAAAACTGTGCTGTAAAATCTCAATAATTTAACTTCTGACCTTTG 1533
Query 1550 AGGTTGCTTTTTACTCT 1566
|||||||||||||||||
Sbjct 1534 AGGTTGCTTTTTACTCT 1550
> Ahg906179 jgi|Araly1|906179|Al_scaffold_0003_3307
Length=1098
Score = 1131 bits (612), Expect = 0.0
Identities = 962/1123 (86%), Gaps = 56/1123 (5%)
Strand=Plus/Plus
Query 103 ATGACGACTCGAATCGCTCCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAG 162
||| |||||||||| |||||||||| |||||||||||||||||||||||| || ||||
Sbjct 1 ATGTCGACTCGAATAACTCCTGGTGTAGGAGCTAATCTTCTCGGCCAACACGCCACTGAA 60
Query 163 AGGAACCAAGACGCCACTGTTTACGTCGGTGGTCTCGA-TGCTCAGCTTTCTGAAGAATT 221
||||||||||||||||| | |||||||| |||| | | |||||||||||||||| ||
Sbjct 61 AGGAACCAAGACGCCACCATCTACGTCGGAAATCTC-AGTCCTCAGCTTTCTGAAGATTT 119
Query 222 GCTTTGGGAATTGTTCGTTCAAGCTGGACCTGTTGTTAATGTCTATGTACCGAAAGAT-A 280
||||| |||||||||||| ||||| ||||| ||||||| |||| | | || |||||| |
Sbjct 120 GCTTTTGGAATTGTTCGTACAAGCCGGACCAGTTGTTAGCGTCTTTATTCCAAAAGATAA 179
Query 281 GAGTGACAAATCTTCATCAGAAC-TATGGATTCATTGAATAT-CGTAGTGAGGAAGATGC 338
| |||||||||||||| || ||| | ||||||| || ||| | |||| ||||||||||||
Sbjct 180 G-GTGACAAATCTTCAACA-AACATTTGGATTCGTTCAAT-TCCGTAATGAGGAAGATGC 236
Query 339 TGATTATGCGATTAAGGTTCT-TAACATGATTAAGCTCCACGGGAAGCCTATACGTGTTA 397
||| ||||| ||||||||| | |||||||||||||||| | ||| |||||||||||||||
Sbjct 237 TGACTATGCAATTAAGGTT-TATAACATGATTAAGCTCTATGGGGAGCCTATACGTGTTA 295
Query 398 ACAAGGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACC 457
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 296 AAAAGGCATCTCAAGATAAGAAGAGCTTGGATGTTGGTGCTAACCTTTTTATTGGAAACC 355
Query 458 TTGACCCTGATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTG 517
|||| |||||||||||||| ||| | |||||||||||||| || || |||||| || |||
Sbjct 356 TTGATCCTGATGTGGATGAAAAGATGTTGTATGATACTTTTAGCGCGTTTGGTATGGTTG 415
Query 518 CTTCTAATCCTAAGATAATGAGAGATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCA 577
|| | |||||||||||||| |||||||||||||||||||| |||||||||| |||||||
Sbjct 416 CTGATCATCCTAAGATAATGCGAGATCCCGATACTGGAAACCCACGAGGTTTCGGTTTCA 475
Query 578 TCAGCTATGACTCCTTTGAAGCATCTGATGCTGCTATTGAGTCAATGACTGGACAATATC 637
| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 TTAGCTATGACTCTTTTGAGGCATCTGATGCTGCTATTGAGGCAATGACTGGACAATATC 535
Query 638 TCAGTAATCGTCAAATCACAGTCTCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCC 697
| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 536 TGAGTAGTCGTCAAATAACAGTCTCTTATGCATACAAGAAAGACACCAAAGGAGAGCGAC 595
Query 698 ATGGTACTCCAGCAGAGAGGCTTTTGGCAGCCACAAATCCAACTGCCCAGAA-AAGCAGA 756
| ||||||| |||||||||||||||||| || |||||||||| | |||| || |||||||
Sbjct 596 ACGGTACTCAAGCAGAGAGGCTTTTGGCTGCTACAAATCCAAGTTCCCA-AAGAAGCAGA 654
Query 757 CCCCATACGCTATTCGCAA-TGGGCCCTCCATC-CAG-T----GCTCCTCAAGTTAATGG 809
||||||||||||||||||| ||| ||||| | | ||| | |||||| ||||||| ||
Sbjct 655 CCCCATACGCTATTCGCAAGTGGCCCCTCTA-CGCAGATTAATGCTCCTAAAGTTAACGG 713
Query 810 TCTACCACGTCCGTTTGCTAACGGCAGC-ATGCAACCTGTCCCGATTCCCG-CTCCCCGT 867
||||||||||||||| ||||| || || ||||| ||||||||||| |||| |||| | |
Sbjct 714 TCTACCACGTCCGTTCGCTAATGG-AGGTATGCAGCCTGTCCCGAT-CCCGGCTCCACAT 771
Query 868 CAACCACCACCACCTCCTCCACAAGTATATCAAACTCAGCCACCATCCTGGCCATCTCAG 927
| |||||||||||| |||||| |||||||||||||||||||| ||||| ||||||
Sbjct 772 CCACCACCACCACC------ACAAGTGTATCAAACTCAGCCACCATCTTGGCCTTCTCAG 825
Query 928 CCACAACAACACAGC--A-TGGTCCCACCACC-C--ATGCAATTCCGTCCACCTCAGGGT 981
|||||||||||| || | |||| |||||||| | |||||||||||||| ||||| |||
Sbjct 826 CCACAACAACACGGCTTAGTGGTTCCACCACCGCCCATGCAATTCCGTCCGCCTCAAGGT 885
Query 982 ATGCCTCCGC--C-ACCACCTCCTCAGTTTC-TAAATCACCAACAAGGTTTCGGTGGTCC 1037
||| |||| | ||||||||||||||||| | | |||||||||||||||||||| |||
Sbjct 886 CTGCAGCCGCAACCACCACCTCCTCAGTTTCATCA-TCACCAACAAGGTTTCGGTGTTCC 944
Query 1038 GAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAACATGGAGGATGGCCAC-CGC 1096
|||||||| |||||| ||||||||||||||||||||||||||| ||||||| | |
Sbjct 945 AAGGCCGCCACCACCATATCAAGCCATGGGAATGCACCAACATGGC---TGGCCACTC-C 1000
Query 1097 AACACATGCAGCAGCAAGGTGGaccaccacaacaacaacaacc-ac-cataccaacacca 1154
|||| || | || ||||||| |||||||| |||||||| ||| | || ||| || ||
Sbjct 1001 AACATAT--A-CATCAAGGTGTACCACCACCACAACAACTACCTATGCA--CCATCATCA 1055
Query 1155 tcacatgtctatgcctccaccaccaccac-ac-c-aaGGTTGA 1194
|||||||||||| |||||||||||||||| || | ||||||||
Sbjct 1056 TCACATGTCTATACCTCCACCACCACCACCACACCAAGGTTGA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5