BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18520.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480760 jgi|Araly1|480760|fgenesh2_kg.3__3461__AT2G18520.1 1895 0.0
> Ahg480760 jgi|Araly1|480760|fgenesh2_kg.3__3461__AT2G18520.1
Length=1352
Score = 1895 bits (1026), Expect = 0.0
Identities = 1186/1262 (94%), Gaps = 16/1262 (1%)
Strand=Plus/Plus
Query 72 ATGACGTCATCTCGCCTCTATCTCCGTTTCCTCCGCCGCTTCTCCACCGCCACCGGTATA 131
|||||| | |||| ||| |||||| |||||||||||||||||||||| || | |
Sbjct 1 ATGACGCCGTCTCATTTCTGTCTCCGCTTCCTCCGCCGCTTCTCCACCG---CC-G-CT- 54
Query 132 GATTCTCAAACCACTGCTTAC-CCCGGCGCAATCACTATGTCCAAAGCTAAATCCAAACT 190
| | ||||| || || | |||||||||||||||| ||||||||||||||||||||
Sbjct 55 G-----C-AACCAATG-TTTCTTCCGGCGCAATCACTATCTCCAAAGCTAAATCCAAACT 107
Query 191 CCGCAAAGTACAAGATCCAGACAAAGCCTTAGCGATTTACAAATCCGTCTCCAACAATTC 250
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 108 CCGCAAAGTCCACGATCCAGACAAAGCCTTAGCGATTTACAAATCCGTCTCCAACAACTC 167
Query 251 CACATCTCCACTCTCCTCTCGTTACGCAATGGAGCTTACAGTCCAACGTCTCGCTAAATC 310
| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 168 CTCATCTCCACTCTCCTCTCGCTACGCCATGGAGCTCACAGTCCAACGTCTCGCTAAATC 227
Query 311 TCAACGCTTCTCCGACATAGAAGCTCTAATTGAGTCTCACAAAAACAACCCAAAGATCAA 370
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TCAACGCTTCTCTGACATAGAAGCTCTAATTGAGTCTCACAAAAACAACCCAAAGATCAA 287
Query 371 AACAGAGACTTTTCTCTCTACACTTATCAGATCTTATGGACGAGCTTCAATGTTTGATCA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AACAGAGACTTTTCTCTCTACACTTATCAGATCTTATGGACGAGCTTCAATGTTTGATCA 347
Query 431 TGCTATGAAGATGTTCGAGGAGATGGATAAGCTTGGCACACCCAGAACCGTTGTTTCCTT 490
|||||||||||||||||||||||||||| || | || ||||| |||||||||||||||||
Sbjct 348 TGCTATGAAGATGTTCGAGGAGATGGATCAGATCGGGACACCAAGAACCGTTGTTTCCTT 407
Query 491 CAATGCCTTACTCGCTGCTTGTCTTCATTCTGATTTGTTTGAAAGAGTCCCCCAACTGTT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CAATGCCTTACTCGCTGCTTGTCTTCATTCTGATTTGTTTGAAAGAGTCCCCCAACTGTT 467
Query 551 CGACGAATTTCCTCAGAGGTATAATAATATCACTCCTGATAAAATCTCTTACGGTATGTT 610
||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 468 CGACGAAATTCCTCAGAGGTATAATAATATTACTCCTGATAAAGTCTCTTATGGTATGTT 527
Query 611 GATTAAGTCGTATTGTGACTCTGGTAAGCCTGAAAAAGCTATGGAGATTATGAGAGATAT 670
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 528 GATTAAGTCGTATTGTGACTCTGGTTCGCCTGAAAAAGCTATGGAGATTATGAGAGATAT 587
Query 671 GGAGGTTAAAGGTGTGGAAGTTACTATCATTGCTTTCACTACCATTTTAGGATCTTTGTA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GGAGGTTAAAGGTGTGGAAGTTACTATCATTGCTTTCACTACCATTTTAGGATCTTTGTA 647
Query 731 TAAGAATGGTTTAGTCGATGAAGCGGAGAGCTTGTGGATTGAGATGGTGAACAAAGGTTG 790
||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||| ||
Sbjct 648 CAAGAATGGTTTAGTCGATGTAGCGGAAAGCTTGTGGACCGAGATGGTGAATAAAGGCTG 707
Query 791 TGACTTGGATAACACAGTTTATAATGTTAGACTTATGAATGCTGCGAAGGAAAGTCCCGA 850
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGAATTGGATAACACTGTTTATAATGTTAGACTTATGAATGCTGCGAAGGAAAGTCCCGA 767
Query 851 GAGAGTTAAGGAATTGATGGAAGAAATGAGTAGTGTAGGATTGAAACCTGATACTGTTAG 910
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 AAGAGTTGGGGAATTGATGGAAGAAATGAGTAGTGTAGGATTGAAACCTGATACGGTTAG 827
Query 911 CTATAACTATCTTATGACTGCGTACTGCGTGAAAGGAATGATGAGTGAAGCCAAGAAAGT 970
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 828 CTATAACTATCTTATGACTGCGTACTGCGTGAAAGGAATGATGGGTGAAGCCAAGAAAGT 887
Query 971 GTATGAAGGGCTTGAGCAACCAAACGCAGCGACGTTCAGGACATTGATATTTCATCTGTG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GTATGAAGGGCTTGAGCAACCAAACGCAGCGACGTTCAGGACATTGATATTTCATCTGTG 947
Query 1031 TATAAACGGGTTGTATGATCAAGGTTTAACGGTGTTTAAGAAGAGCGCGATAGTGCACAA 1090
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 948 TATAAATGGGTTGTATGATCAAGGTTTAACGGTGTTTAAGAAGAGTGCGATTGTGCACAA 1007
Query 1091 GATTCCGGATTTCAAAACTTGTAAGCATTTGACTGAAGGATTGGTGAAGAATAACAGAAT 1150
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1008 GATTCCGGATTTCAAAACTTGTAAGCATTTGACTGAAGGGTTGGTGAAAAATAACAGAAT 1067
Query 1151 GGAAGATGCAAGAGGAGTGGCCAGGA-TCGTGAAGAAGAAATTCCCTCCGCGTTTGGTGA 1209
||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |
Sbjct 1068 GGAAGATGCAAGAGGAGTGGCTAGGACT-GTGAAGAAGAAATTCCCTCCGCGTTTAGTAA 1126
Query 1210 CCGAGTGGAAGAAACTAGAGGAGAAGCTGGGATTGTATTCAAAGGGTAATGCAGCTGCTG 1269
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 1127 CCGAGTGGAAGAAACTAGAGGAGAAGCTGGGTTTGTATTCGAAGGCTAATGCAGCTGCTG 1186
Query 1270 TTTCATCTTCTTCTCAAACTAGAGAAGTGTTAGATCAAGAAAGAGAGGATGATGTATAAA 1329
|||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |
Sbjct 1187 TTTCATCTTCTTCTCAAACTAGAGAAGTGTTAGAACAAGAAAGAGAGGATGCTGCATACA 1246
Query 1330 GC 1331
||
Sbjct 1247 GC 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5