BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18540.1
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931752 jgi|Araly1|931752|scaffold_304209.1 1206 0.0
> Ahg931752 jgi|Araly1|931752|scaffold_304209.1
Length=1489
Score = 1206 bits (653), Expect = 0.0
Identities = 774/834 (93%), Gaps = 2/834 (0%)
Strand=Plus/Plus
Query 534 GGTTCCTGAGGATATTTTGAGGAAGATAAGAGACGCAACAAAACCTCCGTTGATTGTAAA 593
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 656 GGTTCCTGAGGATATTTTGAGGAAGATAAGAGAAGCAACAAAACCTCCGTTGATTGTAAA 715
Query 594 TGCTCTACCGAGAAACAGAACACAAGGCTTGGAGGAGGATAAGTGGCAATCACGGCTTGT 653
|||||| |||||||||||||||||||||| || |||||||||||||||||||| ||| ||
Sbjct 716 TGCTCTGCCGAGAAACAGAACACAAGGCTCGGGGGAGGATAAGTGGCAATCACAGCTCGT 775
Query 654 TAGGCTCTTTGTCAGTGTTGAAGACGTGACTGATCACCTGGCTATGAAACCAATCGTTGA 713
|||||| |||||||| | ||||||||| |||||||| |||| |||||||||||||||||
Sbjct 776 TAGGCTTTTTGTCAGAGCTGAAGACGTCACTGATCATTTGGCGATGAAACCAATCGTTGA 835
Query 714 TACTAATAAAAAGAAATCAAGAACGTTCAATGTTTTTGAGGAAGACCCGGACTTTGAGAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TACTAATAAAAAGAAATCAAGAACGTTCAATGTTTTTGAGGAAGACCCGGACTTTGAGAA 895
Query 774 CAACAACGGGCGGAGCATAGTGGTAGACGAGAAGGATTTGGATGCTTTAAAGGGTTCAAG 833
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CATCAATGGTCGGAGCATAGTGGTAGACGAGAAGGATTTGGATGCTTTAAAGGGTTCAAG 955
Query 834 ATTTGGGGTTTTTATGGTTAATCTAACTAAGGGATCGATGATAGGACCACATTGGAACCC 893
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 956 ATTTGGGGTTTTTATGGTTAATCTGACTAAGGGATCGATGATGGGACCGCATTGGAACCC 1015
Query 894 TAGTGCTTGCGAGATATCGATTGTGTTAGAAGGGGAAGGCATGGTTCGGGTGGTTAACCA 953
||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1016 TAGTGCTTGTGAGATATCGATTGTGTTACAAGGGGAAGGCATGATTCGGGTGGTTAACCA 1075
Query 954 ACAGTCGTTGTCTTCTTGCAAAAACGATAGGAAGAGCGAGAGCTTCATGGTTGAGGAAGG 1013
||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||||
Sbjct 1076 ACAGTCGTTGTCTTCTTGCAAGAACAATAGCAAGAGCGAGAGCTTTATGGTTGAGGAAGG 1135
Query 1014 AGATGTTTTTGTTGTGCCGAAGTTTCATCCGATGGCTCAAATGTCTTTCGAAAACAGTTC 1073
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1136 AGATGTTTTTGTTGTGCCGAAGTTTCATCCTATGGCTCAGATGTCTTTCGAAAACAGTTC 1195
Query 1074 ATTTGTATTTATGGGGTTTAGCACATCGGCGAAGACAAACCACCCTCAGTTCTTAGTAGG 1133
|||||||||||||||| |||||| || | ||||| |||||||||||||| ||||||||
Sbjct 1196 TTTTGTATTTATGGGGTATAGCACTTCCTCAAAGACGAACCACCCTCAGTTTTTAGTAGG 1255
Query 1134 GCAAAGCTCAGTTTTAAAAGTATTGGACCGGGACGTAGTTGCTGTGTCTTTCAACTTGAG 1193
|| ||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||||| ||
Sbjct 1256 TCAGAGCTCGGTTCTGAAAGTATTGGACCCGGAAGTACTTGCTGTGTCTTTCAACTTAAG 1315
Query 1194 TAATGAGACTATCAAGGGACTCTTGAAAGCTCAGAAAGAAAGTGTGATATTTGAGTGTGC 1253
||| ||||| || |||| | | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1316 TAACGAGACAATTAAGGAATTGTTGAAAGCTCAAAAAGAAAGTGTGATATTTGAGTGTGC 1375
Query 1254 GTCATGTGCGGAGGGGGAGCTTT-CAAAGCTTAtgagggagattgaagagaggaagagac 1312
||||||||||||||| ||| ||| |||||| |||||||||||||| ||||||||||||||
Sbjct 1376 GTCATGTGCGGAGGGAGAG-TTTGCAAAGCGTATGAGGGAGATTGCAGAGAGGAAGAGAC 1434
Query 1313 gtgaggaggaagaaattgagcgaagacggaaagaagaggaggaagcaaggaaaa 1366
|||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1435 GTGAGGAGGAAGAAATTGAGCGAAAACGGGAATAAGAGGAGGAAGCAAGGAAAA 1488
Score = 712 bits (385), Expect = 0.0
Identities = 492/542 (91%), Gaps = 13/542 (2%)
Strand=Plus/Plus
Query 6 GAGATTTAGGATACTACCACTGTCCATTTTCCTCTGTTTTGTTAGCTTGTTCTTCTGCAC 65
|||||||| |||||||||| ||| ||||||||||| | |||||| ||||||| |||||||
Sbjct 23 GAGATTTAAGATACTACCATTGTTCATTTTCCTCTCTCTTGTTACCTTGTTCATCTGCAC 82
Query 66 AGAGTC-TTTTACGCACCAAAATGGCGTCGTTCCGAGCTTTGACCCGTCGTATTCGTCTC 124
||| || |||| || ||||||||||||| |||||||||| ||| |||||| ||| || |
Sbjct 83 AGATTCGTTTT-CGGACCAAAATGGCGTTGTTCCGAGCTCTGATTCGTCGTTTTCATCGC 141
Query 125 CACTTCTGGTCAAGAAGGATCAACGCACGTCAGTCGTCGCGACGGAGTTTGGA-AATATA 183
||||||||||||||||||| ||||||||| || ||||||||||||||| |||| || |||
Sbjct 142 CACTTCTGGTCAAGAAGGACCAACGCACGCCAATCGTCGCGACGGAGTATGGAGAA-ATA 200
Query 184 TCAGCCGTTCAGATCGGTGATGGATACCATATTCAGTTCATAACATTGGAGCCAAACGCA 243
|||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 201 TCAGCCGTCCAGATCGGTGATGGGTATCATCTTCAGTTCATAACATTGGAGCCAAACGCA 260
Query 244 CTTTTGCTTCCACTTCTTCTCCATTCCGACATGGTTTTCTTTGTTCACACTGGGACTGGG 303
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 261 CTCTTGCTTCCTCTTCTTCTCCATTCCGACATGGTTTTCTTTGTTCACACTGGGAGTGGG 320
Query 304 ATTCTGAATTGGATCGATGAGGAGAGCGAGAGGAAGTTAGAATTAAGACGGGGAGATGTT 363
||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 321 ATTCTGAATTGGATCGACGAGGAGAGCGAGAGGACGTTGGAATTAAGACGAGGAGATGTT 380
Query 364 TTCAGGCTACGTTCCGGTACAGTCTTCTATGTACATAGCAACGA-GA---A-A----CTT 414
| |||||||||||||||||||||||||||||||||||||||||| || | | |||
Sbjct 381 TACAGGCTACGTTCCGGTACAGTCTTCTATGTACATAGCAACGAAGATTCAGAGAAACTT 440
Query 415 AGGGTTTACGCAATCTTTAATGTGGGGAAGTGTTTAAACGATCCATGTCTTGGAGCCTAC 474
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 441 AGGGTTTACGCAATCTTCGATGTGGGGAAGTGTTTAAACGATCCGTGTCTTGGAGCCTAC 500
Query 475 TCGAGTGTTAGAGACCTTTTATTGGGTTTCGACGATAGAACTCTCCGGTCAGCTTTTGCG 534
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 501 TCGAGTGTTAGAGACATTTTATTGGGCTTCGACGATAGAACTCTCCGGTCAGCTTTTGCG 560
Query 535 GT 536
||
Sbjct 561 GT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79913334010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5