BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18550.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343486 jgi|Araly1|343486|fgenesh1_pg.C_scaffold_3003249 1042 0.0
Ahg325029 jgi|Araly1|325029|fgenesh1_pm.C_scaffold_6000249 56.5 2e-07
> Ahg343486 jgi|Araly1|343486|fgenesh1_pg.C_scaffold_3003249
Length=663
Score = 1042 bits (564), Expect = 0.0
Identities = 631/664 (95%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 1 ATGAATAACCAGAATGTAGATGATCATAATCTTCTACTCATTTCTCAATTGTACCCTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAATAACCAGAATGTAGATGATCATAATCTTCTACTCATTTCTCAGTTGTACCCTAAT 60
Query 61 GTCTATACTCCATTAGTACCACAACAAGGAGGAGAAGCAAAACCAACACGGCGGAGGAAA 120
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 61 GTCTATACTCCATTAGTACCACAACAAGCAGGAGAAGCAAAACCAGCGCGGCGGAGGAAA 120
Query 121 AGGAAGAGCAAGAGTGTTGTGGTGGCAGAGGAGGGTGAAAACGAAGGCAATGGGTGGTTT 180
||||||||||||||||||| | ||||||||||||||| | || ||||||||||||||||
Sbjct 121 AGGAAGAGCAAGAGTGTTGCGATGGCAGAGGAGGGTGGAGCCGGAGGCAATGGGTGGTTT 180
Query 181 AGAAAGAGAAAATTGAGTGATGAGCAAGTAAGAATGTTGGAGATTAGCTTTGAAGACGAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AGAAAGAGAAAATTGAGTGATGAGCAAGTAAGAATGTTGGAGATTAGCTTTGAAGATGAT 240
Query 241 CATAAGCTTGAATCCGAGAGGAAAGATCGGCTTGCTTCTGAGTTAGGGCTTGATCCTCGT 300
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 241 CAAAAGCTTGAATCGGAGAGGAAAGATCGGCTTGCTTCGGAGTTAGGGCTTGACCCTCGT 300
Query 301 CAAGTCGCCGTCTGGTTCCAAAACCGCCGTGCACGGTGGAAGAACAA-ACGAGTCGAGGA 359
|||||||||||||||||||| |||||||||||||||| |||||||| | |||| |||||
Sbjct 301 CAAGTCGCCGTCTGGTTCCAGAACCGCCGTGCACGGTTTAAGAACAAGA-GAGTTGAGGA 359
Query 360 TGAATACACTAAACTCAAGAATGCATACGAAACCACCGTCGTTGAGAAATGTCGTCTTGA 419
||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 360 TGAATACACTAAAATCAAAAACGCATATGAAACCACCGTCGTTGAGAAGTGTCGTCTTGA 419
Query 420 TTCTGAGGTTATTCACCTAAAGGAACAACTTTACGAGGCTGAAAGAGAGATCCAACGGCT 479
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTGAGGTTCTTCACCTTAAGGAACAACTTTACGAGGCTGAAAGAGAGATCCAACGGCT 479
Query 480 TGCAAAAAGAGTTGAAGGAACTTTAAGTAACAGTCCTATCTCATCCTCTGTGACCATTGA 539
|||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 480 TGCACAAAGAGTTGAAGGAACTTTAAGTAACAGTCCCATCTCATCCTTTGTGACCATTGA 539
Query 540 AGCCAATCATACGACACCGTTTTTTGGAGATTACGACATCGGATTTGACGGTGAGGCTGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 AGCCAATCATACGACACCGTTTTTTGGAGATTACGACATCGGATTTGACGGTGAGGGTGA 599
Query 600 CGAGAACTTGCTCTACTCGCCAGATTACATTGATGGATTAGACTGGATGAGCCAATTTAT 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 CGAGAACTTGCTCTACTCGCCAGATTACATTGATGGATTAGAATGGATGAGCCAATTTAT 659
Query 660 GTAA 663
||||
Sbjct 660 GTAA 663
> Ahg325029 jgi|Araly1|325029|fgenesh1_pm.C_scaffold_6000249
Length=714
Score = 56.5 bits (30), Expect = 2e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 313 TGGTTCCAAAACCGCCGTGCACGGTGGAAG 342
||||||||||||||||||||||||||||||
Sbjct 367 TGGTTCCAAAACCGCCGTGCACGGTGGAAG 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5