BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18560.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319804 jgi|Araly1|319804|fgenesh1_pm.C_scaffold_3002820 1620 0.0
Ahg480763 jgi|Araly1|480763|fgenesh2_kg.3__3464__AT2G18570.1 1399 0.0
> Ahg319804 jgi|Araly1|319804|fgenesh1_pm.C_scaffold_3002820
Length=1335
Score = 1620 bits (877), Expect = 0.0
Identities = 1057/1146 (92%), Gaps = 4/1146 (0%)
Strand=Plus/Plus
Query 408 GATGCGAGAAATGAAGTCCACGGTTCGTGATGCCGTGAAATCAATGAAGCAAAAACCGAC 467
|||||||| |||| | || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 192 GATGCGAGCCATGACGCCCGCGGTTCGAGATGCCGTGAAATCAATGAAGCAAAAACCGAC 251
Query 468 GGTCATGATTGTTGACTTTTTTGGTACAGCGTTGTTGTCCATAACCGATGTAGGTGTGAC 527
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GGTCATGATCGTTGACTTTTTTGGTACAGCGTTGTTGTCCATAACCGATGTAGGTGTGAC 311
Query 528 GAG-TAAGTATGTGTACATACCGTCTCACGCGTGGTTCTTGGCATTAATTGTCTACTTGC 586
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 312 G-GCTAAGTATGTGTACATACCGTCGCACGCGTGGTTCTTGGCATTAATTGTCTACTTGC 370
Query 587 CGGTATTGGATAAGGTAATGGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAATAC 646
| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CAGTGTTGGATAAGGCAGTGGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAATAC 430
Query 647 CAGGTTGTAAACCGGTCGGACCAAAAGAGCTTTTGGACACAATGTTAGACCGGTCCGACC 706
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 431 CAGGTTGTAAACCGGTCGGACCAAAGGAGCTTTTGGACACGATGTTAGACCGGTCGGACC 490
Query 707 AACAATACCGTGATTGTGTACAGATTGGGTTGGAGATACCTATGAGCGATGGAGTTTTGG 766
|||| |||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 491 AACAGTACCGTGAGTGTGTACAGAGTGGTTTGGAGATACCTATGAGCGATGGCGTTTTGG 550
Query 767 TAAATACTTGGGGGGAGTTACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGACATAGATT 826
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 551 TAAATACTTGGGAGGAGTTACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGACATGGATT 610
Query 827 TGAACCGGGTTATAAAAGTACCGGTTTATCCTATTGGACCTATTGTTAGGACTAATGTGC 886
||||||||||||| ||||||||||| || |||||||| |||||||||||| |||||||||
Sbjct 611 TGAACCGGGTTATGAAAGTACCGGTCTACCCTATTGGGCCTATTGTTAGGTCTAATGTGC 670
Query 887 TTATTGAAAAACCAAACAGTACATTCGAGTGGCTAGACAAACAAGAGGAAAGATCTGTTG 946
|||||||||||| ||| |||| || ||||||||||||||||||| ||||||||| |||
Sbjct 671 TTATTGAAAAACGAAATAGTATTTTGGAGTGGCTAGACAAACAAGGGGAAAGATCAGTTT 730
Query 947 TATATGTGTGTTTAGGGAGTGGTGGAACATTGTCGTTTGAGCAAACGATGGAACTAGCTT 1006
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 731 TGTATGTGTGTTTAGGGAGTGGTGGAACGTTGTCGTTGGAGCAAACGATGGAACTCGCTT 790
Query 1007 GGGGGTTAGAGTTAAGTTGTCAAAGTTTCTTATGGGTTCTACGTAAGCCTCCTTCTTACC 1066
|||| |||||||||||| | ||||||||| |||||||||| |||| |||| ||||||||
Sbjct 791 GGGGTTTAGAGTTAAGTGGCCAAAGTTTCCTATGGGTTCTTCGTAGGCCTGTTTCTTACC 850
Query 1067 TTGGAGCAAGCTCAAAAGATGATGATCAAGTAAGTGACG-GTCTACCAGAAGGTTTCTTG 1125
|||| | ||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 851 TTGGTGGGAGCTCAAAAGATGATGATCAAGTGAGTG-CTTGTCTACCAGAAGGTTTCTTG 909
Query 1126 GACCGCACACGTGGTGTAGGGCTTGTGGTAACGCAATGGGCACCGCAAGTTGAGATCTTA 1185
||||| |||||||||||||| ||||||| ||| |||||||||| ||||||||||||||
Sbjct 910 GACCGTACACGTGGTGTAGGTTTTGTGGTCACGGAATGGGCACCACAAGTTGAGATCTTG 969
Query 1186 AGCCATAGATCAATCGGTGGGTTTTTGTCACATTGTGGTTGGAGCTCGGTGTTGGAGAGT 1245
|||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||
Sbjct 970 AGCCATAGATCAATCGGTGGGTTTTTATCTCATTGTGGTTGGAGCTCAGTCTTGGAGAGT 1029
Query 1246 TTAACTAAAGGAGTTCCGATCATCGCTTGGCCTCTTTATGCGGAGCAATGGATGAATGCC 1305
|| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 1030 TTGACTAAAGGAGTTCCGATCGTTGCTTGGCCTCTATATGCGGAGCAATGGATGAATGCC 1089
Query 1306 ACGTTGCTGACGGAGGAGATTGGTATGGCTATTCGTACGTCAGAGTTACCGTCGAAGAAA 1365
||||||||||| |||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct 1090 ACGTTGCTGACAGAGGAGATTGGTGTGGCCATTCGTACGTCAGATTTACCGTCAAAGAAA 1149
Query 1366 GTGATCAGCCGGGAAGAAGTGGCGTCTTTGGTGAAGAAGATTGTAGCGGAAGAGGATAAA 1425
|||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 1150 GTGATCGGCCGGGAAGAAGTGGCGTATTTGGTGAAAAAGATTGTAGTGGAAGAGGATAAA 1209
Query 1426 GAAGGACGAAAGATAAAGACTAAAGCTGAAGAGGTGAGGGTTAGCTCCGAACGAGCTTGG 1485
|||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1210 GAAGGACGGAAGATAAAGGCTAGAGCTGAGGAGGTGAGGGTTAGCTCCGAACGAGCTTGG 1269
Query 1486 ACTCATGGTGGGTCGTCTCATAGTTCTCTCTTTGAATGGGCAAAACGATGTGGGCTTGTA 1545
|||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||||
Sbjct 1270 ACTCATGGTGGGTCGTCTCATAGTTCTCTCGTTGAATGGGCAAAACGGTGTCGTCTTGTG 1329
Query 1546 TCTTAA 1551
||||||
Sbjct 1330 TCTTAA 1335
Score = 252 bits (136), Expect = 8e-66
Identities = 172/189 (91%), Gaps = 3/189 (2%)
Strand=Plus/Plus
Query 143 ATGGAGCATCCTCACG-TGCTTTTAGTCGCTAGCCCTGGCTTGGGGCACCTTATCCCTGC 201
||||| || ||||||| | ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGACCAGCCTCACGCT-CTTGTAGTCGCTAGCCCTGGCTTGGGCCACCTTATCCCTGC 59
Query 202 CCTCGAACTCGGAAACCGTCTCTCCTTCGTCCTCAACGTCCACGTCACCATTCTTGCAAT 261
|||||||||||| ||||||||||||| | ||||||| || |||||||||||||||||||
Sbjct 60 CCTCGAACTCGGCAACCGTCTCTCCTCCATCCTCAATATCAACGTCACCATTCTTGCAAT 119
Query 262 CACCTCCGGCTCCTCTTCCCTCACAGAAACCGAGACCATACATACAGCCGCGGCTAGAGG 321
||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct 120 CACCTCCGGCTCCTCTTCCCTGACAGAAACCGAGATGATACATGCAGCCGCGGCTAGAGG 179
Query 322 GACCTGTGA 330
||||| |||
Sbjct 180 GACCT-TGA 187
> Ahg480763 jgi|Araly1|480763|fgenesh2_kg.3__3464__AT2G18570.1
Length=1631
Score = 1399 bits (757), Expect = 0.0
Identities = 1220/1441 (85%), Gaps = 42/1441 (3%)
Strand=Plus/Plus
Query 139 GATCATGGAGCATCCTCACGTGCTTTTAGTCGCTAGCCCTGGCTTGGGGCACCTTATCCC 198
||||||||| || ||||||| |||| |||||||||||||||||||||| ||||| |||||
Sbjct 105 GATCATGGACCAGCCTCACGCGCTTCTAGTCGCTAGCCCTGGCTTGGGTCACCTCATCCC 164
Query 199 TGCCCTCGAACTCGGAAACCGTCTCTCCTTCGTCCTCAACGTCCACGTCACCATTCTTGC 258
| |||||||||||||||||||||||||| |||||| ||| ||||||||||||| || ||
Sbjct 165 TATCCTCGAACTCGGAAACCGTCTCTCCTCCGTCCTAAACATCCACGTCACCATACTCGC 224
Query 259 AATCACCTCCGGCTCCTCTTC-CCTCACAGAAACCG-AGACCATACATACAGCCGCGGCT 316
|||||||||||||||| || || |||||||||| || |||||| | ||||||| |||
Sbjct 225 CGTCACCTCCGGCTCCTCGTCACC-GACAGAAACCGAAG-CCATACGTGCAGCCGCTGCT 282
Query 317 AG-AGGGACCTGTGAAATTATC-GAA-TTACCCTCTGTCGATATAGACCACCTAGTGGAG 373
|| | | ||||||||| || | ||| || ||||| || ||||||||| |||| ||||||
Sbjct 283 AGAACTG-CCTGTGAAA-TAACGGAACTT-CCCTCGGTGGATATAGACAACCTCGTGGAG 339
Query 374 CCAGATGCGACAGTGGTCACTAA-ATAGTGAG-CAAGATGCGAGAAATGAAGTCCACGGT 431
|||||||| || |||| |||||| || ||| | |||||||||| |||||||||| ||
Sbjct 340 CCAGATGCAACGGTGGCCACTAAGATCGTG-GTAAAGATGCGAGCCATGAAGTCCAAAGT 398
Query 432 TCGTGATGCCGTGAAATCAATGAAGCAAAAACCGA-CGGTCATGATTGTTGACTTTTTTG 490
|||||| |||||| |||||||||||| |||||| | |||||||||| |||||||||||||
Sbjct 399 TCGTGACGCCGTGGAATCAATGAAGCGAAAACC-AGCGGTCATGATCGTTGACTTTTTTG 457
Query 491 GTACAGCGTTGTTGTCCATAACCGAT---GTAGG-TGTGACGAG-TAAGTATGTGTACAT 545
|||| | |||| ||| | || ||||| ||||| | ||||| | |||||| ||||||||
Sbjct 458 GTACGGGGTTGATGTGCGTAGCCGATGACGTAGGCT-TGACG-GCTAAGTACGTGTACAT 515
Query 546 ACCGTCTCACGCGTGGTTCTTGGCATTAATTGTCTACTTGCCGGTATTGGATAAGGTAAT 605
|| || || ||||||||||| ||| | || || ||||||||||| || |||| |||| |
Sbjct 516 CCCCTCGCATGCGTGGTTCTTAGCAGTCATGGTGTACTTGCCGGTGTTAGATACGGTAGT 575
Query 606 GGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAATACCAGGTTGTAAACCGGTCGG 665
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 576 GGAAGGTGAGTATGTTGATATTAAGGAGCCTTTAAAAATACCGGGTTGTAAACCGGTCGG 635
Query 666 ACCAAAAGAGCTTTTGGACACAATGTTAGACCGGTCCGACCAACAATACCGTGATTGTGT 725
|| ||| ||||| |||| || |||||||||||||| ||||| ||||| || |||||
Sbjct 636 ACGAAAGGAGCTGATGGAAACGATGTTAGACCGGTCGGACCAGCAATATAAAGAGTGTGT 695
Query 726 AC-AGATTGGGTTGGAGATACCTATGAGCGATGGAGTTTTGGTAAATACTTGGGGGGAGT 784
|| || |||| || ||| |||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 696 ACGAG-TTGGCTTAGAGGTACCTATGAGCGATGGTGTTTTAGTAAATACTTGGGAGGAGT 754
Query 785 TACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGACATAGATTTGAACCGGGTTATAAAAG 844
||||||| || ||||| |||||| | ||||||||| ||| || |||||||| || ||||
Sbjct 755 TACAAGGAAACACTCTCGCTGCGTTTAGAGAGGACGGAGAGTTAAACCGGGTCATGAAAG 814
Query 845 TACCGGTTTATCCTATTGGACCTATTGTTAGGACTAATGTGCTTATTGAAAAAC-CAAAC 903
||| ||||||||||||||| |||||||||||||||| | || | | ||||||| |||
Sbjct 815 TACTGGTTTATCCTATTGGGCCTATTGTTAGGACTAGCGGGCATGTGGAAAAACTCAAT- 873
Query 904 AGTACATTCGAGTGGCTAGACAAACAAGAGGAAAGATC--TGTTGTATATGTGTGTTTAG 961
|||| ||||||||||||||||||||||| |||| | || |||||||| ||||||||||
Sbjct 874 AGTATATTCGAGTGGCTAGACAAACAAGGGGAACGGTCAGTGTTGTAT--GTGTGTTTAG 931
Query 962 GGAGTGGTGGAACATTGTCGTTTGAGCAAAC-GATGGAACTAGCTTGGGGGTTAGAGTTA 1020
|||| |||||||| ||| ||||||||||||| | ||||||| |||||||| |||||||||
Sbjct 932 GGAGCGGTGGAACGTTGACGTTTGAGCAAACAG-TGGAACTCGCTTGGGGTTTAGAGTTA 990
Query 1021 AGTTGTCAAAGTTTC-TTATGGGTTCTACGTAAGCCTC-CTTCTTACCTTGGAGCAAGCT 1078
||| ||||||| ||| || ||||||||||||| ||| | |||||||||| || | ||||
Sbjct 991 AGTGGTCAAAGGTTCGTT-TGGGTTCTACGTAGGCC-CGCTTCTTACCTCGGGGTGAGCT 1048
Query 1079 CAAAAGATGATGATCAAGTAAGTGACG-GTCTACCAGAAGGTTTCTTGGACCGCACACGT 1137
||| ||||||||||| || | | || | ||||| || ||||||||||| ||||| ||
Sbjct 1049 CAAGCGATGATGATCAGGTGATT-ACCAGCCTACCTGACGGTTTCTTGGATCGCACGTGT 1107
Query 1138 GGTGTAGGGCTTGTGGTAACGCAATGGGCACCGCAAGTTGAGATCTTAAGCCATAGATCA 1197
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1108 GGTGTGGGGCTTGTGGTTACGCAATGGGCACCGCAAGTTGAGATCTTGAGCCATAGATCG 1167
Query 1198 ATCGGTGGGTTTTTGTCACATTGTGGTTGGAGCTCGGTGTTGGAGAGTTTAACTAAAGGA 1257
||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 1168 ATCGGTGGGTTCTTGTCTCATTGCGGTTGGAGTTCGGTGTTGGAAAGTTTGACTAAAGGA 1227
Query 1258 GTTCCGATCATCGCTTGGCCTCTTTATGCGGAGCAATGGATGAATGCCACGTTGCTGACG 1317
||||||||| | ||||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct 1228 GTTCCGATCGTGGCTTGGCCTCTTTATGCGGAGCAGTGGATGAATGTCACGTTACTGACT 1287
Query 1318 GAGGAGATTGGTATGGCTATTCGTACGTCAGAGTTACCGTC-GAAGAAAGTGATCAGCCG 1376
|||||||| ||| |||| ||||||||| |||||||| || || |||||| ||| | ||
Sbjct 1288 GAGGAGATCGGTGTGGCCGTTCGTACGTTGGAGTTACCATCAGA-GAAAGTCATCGGACG 1346
Query 1377 GGAAGAAGTGGCGTCTTTGGTGAAGAAGATTGTAGCGGAAGAGGATAAAGAAGGAC-GAA 1435
|||||||||||| ||| |||||| ||||||||| |||||||||||| ||||||||| | |
Sbjct 1347 GGAAGAAGTGGCATCTCTGGTGAGGAAGATTGTGGCGGAAGAGGATGAAGAAGGACAGGA 1406
Query 1436 AGATAAAGACTAAAGCTGAAGAGGTGAGGGTTAGCTCCGAACGAGCTTGGACTCATGGTG 1495
| || | | |||||||||||||||||| ||||||||||||| ||||||||| ||| ||||
Sbjct 1407 A-ATTAGGGCTAAAGCTGAAGAGGTGAAGGTTAGCTCCGAAAGAGCTTGGAGTCAAGGTG 1465
Query 1496 GGTCGTCTCATAGTTCTCTCTTTGAATGGGCAAAACGATGTGGGCTTGTATCTTAATTTG 1555
| || ||| ||| |||||| ||||||||||||||||||||| |||||||| | |||||
Sbjct 1466 GATCATCTTATAATTCTCTATTTGAATGGGCAAAACGATGTTATCTTGTATCGTGATTTG 1525
Query 1556 A 1556
|
Sbjct 1526 A 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5