BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18570.1
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480763 jgi|Araly1|480763|fgenesh2_kg.3__3464__AT2G18570.1 2141 0.0
Ahg319804 jgi|Araly1|319804|fgenesh1_pm.C_scaffold_3002820 1110 0.0
> Ahg480763 jgi|Araly1|480763|fgenesh2_kg.3__3464__AT2G18570.1
Length=1631
Score = 2141 bits (1159), Expect = 0.0
Identities = 1416/1543 (92%), Gaps = 6/1543 (0%)
Strand=Plus/Plus
Query 1 AATAATAAATATCACTTGTTAAATGGCCTATACCGAAATCCAATCCACAATGATTTTGCT 60
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 1 AATAATAAATATCACTTGTT-AATGGCCTATACCGAAATCCAATCCACGATTATTTTGCT 59
Query 61 ACACAGAAACTAGCAACTAAAAAGAAAAGTAAGTGGTCGACCATCGATCATGGACCAGCC 120
|||||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 60 ACACAGAAACCAACAACTAAAAAGAAATGTAAGTGGTCGAACATCGATCATGGACCAGCC 119
Query 121 TCACGCGCTTCTAGTGGCTAGCCCTGGCTTGGGTCACCTCATCCCTATCCTGGAGCTCGG 180
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 120 TCACGCGCTTCTAGTCGCTAGCCCTGGCTTGGGTCACCTCATCCCTATCCTCGAACTCGG 179
Query 181 CAACCGTCTCTCCTCCGTCCTAAACATCCACGTCACCATTCTCGCGGTCACCTCCGGCTC 240
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 180 AAACCGTCTCTCCTCCGTCCTAAACATCCACGTCACCATACTCGCCGTCACCTCCGGCTC 239
Query 241 CTCTTCACCGACAGAAACCGAAGCCATACATGCAGCCGCGGCTAGAACAATCTGTCAAAT 300
||| ||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||
Sbjct 240 CTCGTCACCGACAGAAACCGAAGCCATACGTGCAGCCGCTGCTAGAACTGCCTGTGAAAT 299
Query 301 TACGGAAATTCCCTCGGTGGATGTAGACAACCTCGTGGAGCCAGATGCTACAATTTTCAC 360
|||||| |||||||||||||| ||||||||||||||||||||||||| || | |||
Sbjct 300 AACGGAACTTCCCTCGGTGGATATAGACAACCTCGTGGAGCCAGATGCAACGGTGGCCAC 359
Query 361 TAAGATGGTGGTGAAGATGCGAGCCATGAAGCCCGCGGTACGAGATGCCGTGAAATTAAT 420
|||||| ||||| |||||||||||||||||| || || || || |||||| ||| |||
Sbjct 360 TAAGATCGTGGTAAAGATGCGAGCCATGAAGTCCAAAGTTCGTGACGCCGTGGAATCAAT 419
Query 421 GAAACGAAAACCAACGGTCATGATTGTTGACTTTTTGGGTACGGAACTGATGTCCGTAGC 480
||| ||||||||| |||||||||| ||||||||||| ||||||| |||||| ||||||
Sbjct 420 GAAGCGAAAACCAGCGGTCATGATCGTTGACTTTTTTGGTACGGGGTTGATGTGCGTAGC 479
Query 481 CGATGACGTAGGCATGACGGCTAAATACGTTTACGTTCCAACTCATGCGTGGTTCTTGGC 540
||||||||||||| |||||||||| ||||| ||| | || | |||||||||||||| ||
Sbjct 480 CGATGACGTAGGCTTGACGGCTAAGTACGTGTACATCCCCTCGCATGCGTGGTTCTTAGC 539
Query 541 AGTCATGGTGTACTTGCCGGTGTTAGATACGGTAGTGGAAGGTGAGTATGTTGATATTAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTCATGGTGTACTTGCCGGTGTTAGATACGGTAGTGGAAGGTGAGTATGTTGATATTAA 599
Query 601 GGAGCCTTTGAAGATACCGGGTTGTAAACCGGTCGGACCGAA-GGAGCTGATGGAAACGA 659
||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 600 GGAGCCTTTAAAAATACCGGGTTGTAAACCGGTCGGAC-GAAAGGAGCTGATGGAAACGA 658
Query 660 TGTTAGACCGGTCGGGCCAGCAATATAAAGAGTGTGTACGAGCTGGCTTAGAGGTACCTA 719
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 TGTTAGACCGGTCGGACCAGCAATATAAAGAGTGTGTACGAGTTGGCTTAGAGGTACCTA 718
Query 720 TGAGCGATGGTGTTTTGGTAAATACTTGGGAGGAGTTACAAGGAAACACTCTCGCTGCGC 779
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGAGCGATGGTGTTTTAGTAAATACTTGGGAGGAGTTACAAGGAAACACTCTCGCTGCGT 778
Query 780 TTAGAGAGGACGAAGAATTGAGCCGGGTCATGAAAGTACCGGTTTATCCTATTGGGCCAA 839
|||||||||||| ||| || | ||||||||||||||||| |||||||||||||||||| |
Sbjct 779 TTAGAGAGGACGGAGAGTTAAACCGGGTCATGAAAGTACTGGTTTATCCTATTGGGCCTA 838
Query 840 TTGTTAGGACTAACCAGCATGTAGACAAACCCAATAGTATATTCGAGTGGCTAGACGAGC 899
|||||||||||| | |||||| || |||| ||||||||||||||||||||||||| | |
Sbjct 839 TTGTTAGGACTAGCGGGCATGTGGAAAAACTCAATAGTATATTCGAGTGGCTAGACAAAC 898
Query 900 AACGGGAAAGGTCAGTGGTGTTTGTGTGTTTAGGGAGCGGTGGAACGTTGACGTTTGAGC 959
|| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGGGGAACGGTCAGTGTTGTATGTGTGTTTAGGGAGCGGTGGAACGTTGACGTTTGAGC 958
Query 960 AAACAGTGGAACTCGCTTTGGGTTTAGAGTTAAGTGGTCAAAGGTTCGTTTGGGTTCTAC 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAACAGTGGAACTCGCTTGGGGTTTAGAGTTAAGTGGTCAAAGGTTCGTTTGGGTTCTAC 1018
Query 1020 GTAGGCCCGCTTCATATCTCGGGGCGATCTCCAGCGATGATGAACAGGTAAGTGCCAGTC 1079
||||||||||||| || ||||||| || ||| ||||||||||| ||||| | | |||| |
Sbjct 1019 GTAGGCCCGCTTCTTACCTCGGGGTGAGCTCAAGCGATGATGATCAGGTGATTACCAGCC 1078
Query 1080 TACCTGAAGGTTTCTTGGACCGCACGCGTGGTGTGGGGATTGTGGTTACGCAATGGGCAC 1139
||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 1079 TACCTGACGGTTTCTTGGATCGCACGTGTGGTGTGGGGCTTGTGGTTACGCAATGGGCAC 1138
Query 1140 CACAAGTTGAGATCTTGAGCCATAGATCGATCGGTGGGTTCTTGTCTCACTGCGGTTGGA 1199
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 CGCAAGTTGAGATCTTGAGCCATAGATCGATCGGTGGGTTCTTGTCTCATTGCGGTTGGA 1198
Query 1200 GTTCGGCT-TTGGAAAGTTTGACTAAAGGAGTTCCGATCATCGCTTGGCCTCTTTATGCG 1258
|||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1199 GTTCGG-TGTTGGAAAGTTTGACTAAAGGAGTTCCGATCGTGGCTTGGCCTCTTTATGCG 1257
Query 1259 GAGCAGTGGATGAATGCCACGTTATTGACTGAGGAGATCGGTGTGGCCGTTCGTACATCG 1318
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1258 GAGCAGTGGATGAATGTCACGTTACTGACTGAGGAGATCGGTGTGGCCGTTCGTACGTTG 1317
Query 1319 GAGTTACCGTCGGAGAGAGTCATCGGAAGGGAAGAAGTGGCATCTCTGGTGAGAAAGATT 1378
|||||||| || |||| |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1318 GAGTTACCATCAGAGAAAGTCATCGGACGGGAAGAAGTGGCATCTCTGGTGAGGAAGATT 1377
Query 1379 ATGGCGGAAGAGGATGAAGAAGGACAGAAAATTAGGGCTAAAGCTGAGGAGGTGAGGGTT 1438
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||
Sbjct 1378 GTGGCGGAAGAGGATGAAGAAGGACAGGAAATTAGGGCTAAAGCTGAAGAGGTGAAGGTT 1437
Query 1439 AGCTCCGAACGAGCTTGGAGTAAAGACGGGTCATCTTATAATTCTCTATTCGAATGGGCA 1498
||||||||| ||||||||||| ||| || |||||||||||||||||||| |||||||||
Sbjct 1438 AGCTCCGAAAGAGCTTGGAGTCAAGGTGGATCATCTTATAATTCTCTATTTGAATGGGCA 1497
Query 1499 AAACGATGTTATCTTGTACCGTGATTCGAGAA-TAACATCATG 1540
|||||||||||||||||| ||||||| || || ||||||||||
Sbjct 1498 AAACGATGTTATCTTGTATCGTGATTTGAAAAATAACATCATG 1540
Score = 130 bits (70), Expect = 4e-29
Identities = 89/97 (92%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 1594 GTGTGTTAAATTTTGCTATGCATATATACAAGATATGTACTTCAATCAGGTATCCTTATA 1653
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1540 GTGTGTTAAATTTTGCTATGC----ATACAAGATATGTACTTCAATCAGGTATCTTTATA 1595
Query 1654 TTTTAATAAAAATTAATAATAGAAC-TTGTGTTTTGT 1689
| ||||||||||||||||||||||| || ||||||||
Sbjct 1596 TATTAATAAAAATTAATAATAGAACGTT-TGTTTTGT 1631
> Ahg319804 jgi|Araly1|319804|fgenesh1_pm.C_scaffold_3002820
Length=1335
Score = 1110 bits (601), Expect = 0.0
Identities = 967/1146 (84%), Gaps = 15/1146 (1%)
Strand=Plus/Plus
Query 376 GATGCGAGCCATGAAGCCCGCGGTACGAGATGCCGTGAAATTAATGAAACGAAAACCAAC 435
|||||||||||||| ||||||||| |||||||||||||||| |||||| | |||||| ||
Sbjct 192 GATGCGAGCCATGACGCCCGCGGTTCGAGATGCCGTGAAATCAATGAAGCAAAAACCGAC 251
Query 436 GGTCATGATTGTTGACTTTTTGGGTACGGAACTGATGTCCGTAGCCGATGACGTAGGCAT 495
||||||||| ||||||||||| ||||| | || ||||| || ||||| ||||| |
Sbjct 252 GGTCATGATCGTTGACTTTTTTGGTACAGCGTTGTTGTCCATAACCGAT---GTAGGTGT 308
Query 496 GACGGCTAAATACGTTTACGTTCCAACTCATGCGTGGTTCTTGGCAGTCATGGTGTACTT 555
||||||||| || || ||| | || | || ||||||||||||||| | || || |||||
Sbjct 309 GACGGCTAAGTATGTGTACATACCGTCGCACGCGTGGTTCTTGGCATTAATTGTCTACTT 368
Query 556 GCCGGTGTTAGATACGGTAGTGGAAGGTGAGTATGTTGATATTAAGGAGCCTTTGAAGAT 615
||| ||||| |||| || |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 369 GCCAGTGTTGGATAAGGCAGTGGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAAT 428
Query 616 ACCGGGTTGTAAACCGGTCGGACCGAAGGAGCTGATGGAAACGATGTTAGACCGGTCGGG 675
||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct 429 ACCAGGTTGTAAACCGGTCGGACCAAAGGAGCTTTTGGACACGATGTTAGACCGGTCGGA 488
Query 676 CCAGCAATATAAAGAGTGTGTAC-GAGCTGGCTTAGAGGTACCTATGAGCGATGGTGTTT 734
||| || || |||||||||| ||| ||| || ||| |||||||||||||||| ||||
Sbjct 489 CCAACAGTACCGTGAGTGTGTACAGAG-TGGTTTGGAGATACCTATGAGCGATGGCGTTT 547
Query 735 TGGTAAATACTTGGGAGGAGTTACAAGGAAACACTCTCGCTGCGCTTAGAGAGGACGA-A 793
|||||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |
Sbjct 548 TGGTAAATACTTGGGAGGAGTTACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGAC-ATG 606
Query 794 GAATTGAGCCGGGTCATGAAAGTACCGGTTTATCCTATTGGGCCAATTGTTAGGACTAAC 853
|| |||| |||||| |||||||||||||| || ||||||||||| ||||||||| ||||
Sbjct 607 GATTTGAACCGGGTTATGAAAGTACCGGTCTACCCTATTGGGCCTATTGTTAGGTCTAAT 666
Query 854 CAGCATGTAGACAAACCCAATAGTATATTCGAGTGGCTAGACGAGCAACGGGAAAGGTCA 913
|| | | || |||| |||||||| || |||||||||||| | ||| ||||||| |||
Sbjct 667 GTGCTTATTGAAAAACGAAATAGTATTTTGGAGTGGCTAGACAAACAAGGGGAAAGATCA 726
Query 914 GTGGTGTTTGTGTGTTTAGGGAGCGGTGGAACGTTGACGTTTGAGCAAACAG-TGGAACT 972
|| ||| ||||||||||||||| |||||||||||| |||| |||||||| | |||||||
Sbjct 727 GTTTTGTATGTGTGTTTAGGGAGTGGTGGAACGTTGTCGTTGGAGCAAAC-GATGGAACT 785
Query 973 CGCTTTGGGTTTAGAGTTAAGTGGTCAAAGGTTCGTTTGGGTTCTACGTAGGCCCGCTTC 1032
||||| |||||||||||||||||| ||||| ||| | |||||||| |||||||| | |||
Sbjct 786 CGCTTGGGGTTTAGAGTTAAGTGGCCAAAGTTTCCTATGGGTTCTTCGTAGGCCTGTTTC 845
Query 1033 ATATCTCGG-GGCGATCTCCAGCGATGATGAACAGGTAAGTGCCAGTCTACCTGAAGGTT 1091
|| || || || || ||| | |||||||| || || ||||| ||||||| |||||||
Sbjct 846 TTACCTTGGTGG-GAGCTCAAAAGATGATGATCAAGTGAGTGCTTGTCTACCAGAAGGTT 904
Query 1092 TCTTGGACCGCACGCGTGGTGTGGGGATTGTGGTTACGCAATGGGCACCACAAGTTGAGA 1151
|||||||||| || |||||||| || ||||||| ||| |||||||||||||||||||||
Sbjct 905 TCTTGGACCGTACACGTGGTGTAGGTTTTGTGGTCACGGAATGGGCACCACAAGTTGAGA 964
Query 1152 TCTTGAGCCATAGATCGATCGGTGGGTTCTTGTCTCACTGCGGTTGGAGTTC-GGCTTTG 1210
|||||||||||||||| ||||||||||| || ||||| || |||||||| || | | |||
Sbjct 965 TCTTGAGCCATAGATCAATCGGTGGGTTTTTATCTCATTGTGGTTGGAGCTCAGTC-TTG 1023
Query 1211 GAAAGTTTGACTAAAGGAGTTCCGATCATCGCTTGGCCTCTTTATGCGGAGCAGTGGATG 1270
|| |||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||
Sbjct 1024 GAGAGTTTGACTAAAGGAGTTCCGATCGTTGCTTGGCCTCTATATGCGGAGCAATGGATG 1083
Query 1271 AATGCCACGTTATTGACTGAGGAGATCGGTGTGGCCGTTCGTACATCGGAGTTACCGTCG 1330
||||||||||| |||| |||||||| ||||||||| ||||||| || || ||||||||
Sbjct 1084 AATGCCACGTTGCTGACAGAGGAGATTGGTGTGGCCATTCGTACGTCAGATTTACCGTCA 1143
Query 1331 GAGAGAGTCATCGGAAGGGAAGAAGTGGCATCTCTGGTGAGAAAGATTATGGCGGAAGAG 1390
||| ||| ||||| ||||||||||||| | | |||||| ||||||| | | |||||||
Sbjct 1144 AAGAAAGTGATCGGCCGGGAAGAAGTGGCGTATTTGGTGAAAAAGATTGTAGTGGAAGAG 1203
Query 1391 GATGAAGAAGGACAGAAAATTAGGGCTAAAGCTGAGGAGGTGAGGGTTAGCTCCGAACGA 1450
||| ||||||||| ||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct 1204 GATAAAGAAGGACGGAAGATAAAGGCTAGAGCTGAGGAGGTGAGGGTTAGCTCCGAACGA 1263
Query 1451 GCTTGGAGTAAAGACGGGTCATCTTATAATTCTCTA-TTCGAATGGGCAAAACGATGTTA 1509
||||||| | | | ||||| ||| ||| |||||| || |||||||||||||| |||
Sbjct 1264 GCTTGGACTCATGGTGGGTCGTCTCATAGTTCTCTCGTT-GAATGGGCAAAACGGTGTCG 1322
Query 1510 TCTTGT 1515
||||||
Sbjct 1323 TCTTGT 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5