BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18590.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319808 jgi|Araly1|319808|fgenesh1_pm.C_scaffold_3002824 2119 0.0
Ahg931758 jgi|Araly1|931758|scaffold_304215.1 1354 0.0
> Ahg319808 jgi|Araly1|319808|fgenesh1_pm.C_scaffold_3002824
Length=1356
Score = 2119 bits (1147), Expect = 0.0
Identities = 1283/1351 (95%), Gaps = 0/1351 (0%)
Strand=Plus/Plus
Query 110 ATGATGCAACGAGCAGATGAAAAACTCATTCCTTCAACTGCCAAAGAATTGAAAGAAGCG 169
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGATGCAACGGGCAGATGAAAAACTCATTCCTTCAACTGCGAAAGAATTGAAAGAAGCG 60
Query 170 TTCCATGCAAAGCTGTCCGATATTGGACTCCTTTCGTTTATAAGAAATATTGTTCAAGGA 229
|||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 TTCCATGCAAAGCTCTCTGATATTGGACTCCTCTCGTTTATAAGAAACATTGTTCAAGGG 120
Query 230 CTTGCCTCGCCTTTAGCCGGTTTATTTGCCATCAGTTATGATCGTCCCACAGTTTTTGCG 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CTTGCCTCGCCTTTAGCCGGTTTATTTGCCATCAGTTATGATCGTCCCACAGTTTTCGCA 180
Query 290 TTCGGAAGTTTCTTTTGGGTCTCATCAACTGTTGCAACTGGAGTCAGCCGCTACTTCATC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCGGAAGTTTCTTTTGGGTCTCATCAACTGTTGCAACTGGAGTCAGCCGCTACTTCATC 240
Query 350 CAGGTTACCCTTGGTGTAGCATTCAATGGGGTTGGACATGCAATTGTTTATCCGGTGCTT 409
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CAGGTAACACTTGGTGTAGCATTCAATGGGGTTGGACATGCAATTGTTTATCCAGTGCTT 300
Query 410 CAGTCGATAATCGCGGATAGCTTTAAGGAGAGTTCGAGAGGTTTTGGTTTTGGTTTATGG 469
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGTCGATAATTGCAGATAGCTTCAAGGAGAGTTCGAGAGGTTTTGGTTTTGGTTTATGG 360
Query 470 AATCTGATTGGTACGGTTGGAGGTATAGGCGGAACCGTCGTGCCAACGGTCATGGCTGGT 529
||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 361 AATCTCATTGGTACGGTTGGAGGTATAGGAGGAACCGTTGTGCCAACAGTCATGGCTGGT 420
Query 530 CATGATTTCTTTGGAATATCAGGATGGCGATGCGCCTTTATATTGAGTGCCACGCTGAGT 589
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATAATTTCTTTGGAATATCAGGATGGCGATGCGCCTTTATATTGAGTGCCACGCTGAGT 480
Query 590 ACGATTGTCGGGATCCTCGTTTTCTTCTTTGTCAGTGACCCGAGAGAAAAGAAGACTAGC 649
|||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 481 GCGATGGTCGGGATTCTCGTTTTCTTCTTTGTCACTGACCCGAGGGAAAAGAAGACTAGC 540
Query 650 AGCGTCATTGTTCATCACGATGATCAACATGAACGAGATGAAAACAATGGTGGTACAATG 709
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |
Sbjct 541 AGCGTCATTGTTCATCACGATGATCAACATGAGCGAGATGAAAACAACGGTGCTACAACG 600
Query 710 ATGGAGAGTCCGAGCTCTTCGGTTTGGAAGGAATCGTGGGTGGCCATAAAAGATGTAACC 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGGAGAGTCCGAGCTCTTCGGTTTGGAAGGAATCGTGGGTGGCCATAAAAGATGTAACC 660
Query 770 AAGTTAAGAACGTTTCAGATCATCGTATTGCAAGGAATCGTGGGTTCGGTGCCGTGGAAT 829
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 661 AAATTAAGAACATTTCAGATCATCGTATTGCAAGGAATCGTCGGTTCGGTGCCATGGAAT 720
Query 830 GCAATGCTTTTCTGGACAATGTGGTTCGAACTCATTGGTTTTGATCATAATCAGGCGGCT 889
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 GCAATGGTTTTCTGGACAATGTGGTTCGAACTCATTGGTTTTGATCATAATCAGGCCGCG 780
Query 890 CTCCTCAATGGAATATTTGCCACCGGACAAGCAATAGGATCATTGGTCGGAGGAATAATT 949
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 CTCCTAAACGGAATATTTGCCACCGGACAAGCAATAGGATCTTTGGTCGGAGGAATAATT 840
Query 950 GCGGATAAAATGTCTCGTGTGTTTCCAAACTCGGGCAGATTGATTTGCGCACAATTCAGC 1009
||||| |||||||||| | ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 841 GCGGACAAAATGTCTCATATGTTTCCAAACTCAGGCAGATTGATTTGTGCACAATTCAGC 900
Query 1010 GTTTTCATGGGAGCTATGTTCTCCATTGTTCTTTTAAGAATGATCCCACAGTCCGTTAAC 1069
||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| | |||
Sbjct 901 GTTTTCATGGGCGCTATATTCTCCATTGTTCTTCTAAGAATGATCCCACAGTCCATAAAC 960
Query 1070 AGTTTCTACATCTTCTTGGTCACTCTCTTTCTTATGGGGCTGACCATAACTTGGTGTGGA 1129
|||| ||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 961 AGTTACTACATCTTCTTGGTAACTCTCTTTCTAATGGGACTAACCATAACTTGGTGTGGA 1020
Query 1130 CCAGCCATTAACTCTCCAATCTTAGCTGAGATTGTTCCTGCTAAGCATCGAACCATGGTC 1189
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1021 CCAGCCATTAACTCTCCAATCTTAGCTGAGATTGTTCCTGCTAAGCATAGAACCATGGTC 1080
Query 1190 TATGCATTTGATCGTGCACTCGAAGTGACTTTTTCGTCATTTGGTGCGCCTTTGGTTGGG 1249
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 TATGCATTTGATCGCGCACTCGAAGTTTCTTTTTCGTCATTTGGTGCGCCTTTGGTTGGG 1140
Query 1250 ATCATGTCGGAAAAACTTTTTGGGTTTGACGCAAAAGGAATTGATCATGTTAACGACTCT 1309
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 ATCATGTCGGAAAAACTTTTCGGGTTTGACGCAAAAGGAATTGATCATGTTAAAGACTCT 1200
Query 1310 GGTCGTGAGGCTGAGGCACTGGGGAAAGGGATCATGTGGATGATGGCTCTCCCGTTTGGA 1369
||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 GGTCGTGAGGCCGAGGCATTGGGGAAAGGGATCATGTGGATGATGGCCCTCCCGTTTGGA 1260
Query 1370 TTGTGTTGTCTTTGTTACACACCGTTGCATTTCCTTTTCCGGAAAGATCGAAAAATCGAT 1429
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 1261 TTGTGTTGTCTTTGTTACACACCGTTACATTTCCTTTTCCGCAAAGATCGAAAAAACGAT 1320
Query 1430 AGAACTACTAGTTCAAGGGAAGTAGAGATGG 1460
|||||||| ||||||| ||||||||||||||
Sbjct 1321 AGAACTACGAGTTCAACGGAAGTAGAGATGG 1351
> Ahg931758 jgi|Araly1|931758|scaffold_304215.1
Length=1459
Score = 1354 bits (733), Expect = 0.0
Identities = 1198/1419 (84%), Gaps = 45/1419 (3%)
Strand=Plus/Plus
Query 68 TATGGAATCTCTATTTCTCTCATTATCATCAACTTAGCGACTATGATGCAACGAGCAGAT 127
||||||||||| ||||||||||| || |||||||||| || |||||||||||||||||
Sbjct 33 TATGGAATCTCCATTTCTCTCATCCTCGTCAACTTAGCCACGATGATGCAACGAGCAGAC 92
Query 128 GAAAAACTCATTCCTTCAACTGCCAAAGAATTGAAAGAAGCGTTCCATGCAAAGCTGTCC 187
||||||||||||||||| |||||||||| |||||||| | ||| |||||| || ||
Sbjct 93 GAAAAACTCATTCCTTCGGTTGCCAAAGAAGTGAAAGAAACATTCAATGCAACCCTCTCT 152
Query 188 GATATTGGACT-CCTTTCGTTTATAAGAAATATTGTTCAAGGACTTGCCTCGCCTTTAGC 246
||||||||| | ||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 153 GATATTGGA-TACCTCACATTTATAAGAAATATTGTTCAAGGACTTGCCTCTCCTTTAGC 211
Query 247 CGGTTTATTTGCCATCAGTTATGATCGTCCC-ACAGTTTTTGCGTTCGGAAGTTTCTTTT 305
||||||||||| |||||||||||| || ||| |||||||| || |||| ||||||| ||
Sbjct 212 CGGTTTATTTGTCATCAGTTATGACCG-CCCAACAGTTTTCGCAATCGGTAGTTTCTGTT 270
Query 306 GGGTCTCATCAACTGTTGCAACTGGAGTC-AGCCGCTACTTCATCCAGGTTACCCTTGGT 364
|||||| ||||||| ||||| |||||| | |||| ||||||||| |||||||||||||||
Sbjct 271 GGGTCTTATCAACTTTTGCAGCTGGAG-CTAGCCACTACTTCATTCAGGTTACCCTTGGT 329
Query 365 GTAGCATTCAATGGGGTTGGACATGCAATTGTTTATCCGGTGCTTCAGTCGATAATCGCG 424
|| ||| |||||||| |||||||||| |||||||| || ||||||||||||||||| |||
Sbjct 330 GTGGCACTCAATGGGTTTGGACATGCGATTGTTTACCCAGTGCTTCAGTCGATAATTGCG 389
Query 425 GATAGCTTTAAG-GAGAGTTCGAGAGGTTTTGGTTTTGGTTTATGGAATCTGATTGGTAC 483
||||||||| || || |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 390 GATAGCTTT-AGTGATAGTTCGAGAGGTTTTGGTTTTGGTTTATGGGGTCTCATTGGTAC 448
Query 484 GGTTGGAGGTATAGGCGGAACCGTCGTGCCAACGGTCATGGCTGGTCATGATTTCTTTGG 543
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 449 GGTTGGAGGTATAGGGGGAACCGTCGTGCCAACAATCATGGCTGGTCATGATTTCTTGGG 508
Query 544 AATATCAGGATGGCGATGCGCCTTTATATTGAGT-GCCACGCTGAGTACGATTGTCGGGA 602
| ||||||||||||||||||||||||||| | || ||| ||||| |||| |||||
Sbjct 509 GACCCCAGGATGGCGATGCGCCTTTATATTGA-TGGCAACGATGAGTGCGATCATCGGGG 567
Query 603 TCCTCGTTTTCTTCTTTGTCAGTGACCCGAGAGA-AAAGAAGACTAGCAGCGTCATTGT- 660
| || ||||| |||||||||| ||||||| | || |||||| | ||||||| ||||| |
Sbjct 568 TTCTTGTTTTTTTCTTTGTCACTGACCCGCG-GACAAAGAAAAGTAGCAGCTTCATT-TC 625
Query 661 TCATCA-CGATGATCAACATGAAC-GA--GATGA-AAA-CAATGGTGGTACAATG-ATGG 713
|||| | | |||| | | |||||| | | | | ||| ||| | || ||| |
Sbjct 626 TCATGATC-ATGAACGAGATGAACTAATGGTTCATAAAGCAA-AGAACTATGATGCTTCA 683
Query 714 A-GAGTCCGAGCTCTTCGGTTTGGAAGGAATCGTGGGTGGCCATAAAAGATGTAACCAAG 772
| | | ||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 684 ACAATTATGAG--C-TCGGTTTGGATGGAATCGTGGGTGGCCATAAAAGATGTAACCAAA 740
Query 773 TTAAGAACGTTTCAGATCATCGTATTGCAAGGAATCGTGGGTTCGGTGCCGTGGAATGCA 832
||| |||| |||||| |||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 741 TTACGAACATTTCAGGTCATCGTAGTGCAAGGAATCGTGGGTTCGGTGCCATGGACTGCA 800
Query 833 ATGCTTTTCTGGACAATGTGGTTCGAACTCA----T-TG-GTTTTGATCATAATCAGGCG 886
||| |||||| ||||||||||||||||| | | || |||||||||| ||| || ||
Sbjct 801 ATGATTTTCTTCACAATGTGGTTCGAACTTATTGGTATGCGTTTTGATCACAATAAGACG 860
Query 887 GC-TCTCCTCAATGGAATATTTGCCACCGGACAAGCAATAGGATCA-TTGGTCGGAGGAA 944
|| || || || || |||| |||| ||||| |||||||||| | || ||||||||||
Sbjct 861 GCAGCT-CTAAACGGCGTATTCACCACTGGACATGCAATAGGAT-ATTTAGTCGGAGGAA 918
Query 945 TAATTGCGGATAAAATGTCTCGTGTGTTTCCAAACTCGGGCAGATTGATTTGCGCACAAT 1004
|| | || || |||||||||||| | || |||||||| |||||| | || || |||||||
Sbjct 919 TAGTCGCAGACAAAATGTCTCGTATATTCCCAAACTCAGGCAGAATAATGTGTGCACAAT 978
Query 1005 TCAGCGTTTTCATGGGAGCTATGTTCTCCATTGTTCTTTTAAGAATGATCCCACAGTCCG 1064
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 979 TCAGCGTTTTCATGGGCGCTATATTCTCCATTATTCTTTTAAGAATGATCCCACAGTCCA 1038
Query 1065 TTAACAGTTTCTACATCTTCTTGGTCACTCTCTTTCTTATGGGGCTGACCATAACTTGGT 1124
|| |||||| ||||||||||||||||||||| ||||| ||||| || |||||||||||||
Sbjct 1039 TTGACAGTTACTACATCTTCTTGGTCACTCTTTTTCTAATGGGTCTAACCATAACTTGGT 1098
Query 1125 GTGGACCAGCCATTAACTCTCCAATCTTAGCTGAGATTGTTCCTGCTAAGCATCGAACCA 1184
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1099 GTGGACCAGCCATTAACTTTCCTATCTTAGCTGAGATTGTTCCTCCTAAGCATCGAACCA 1158
Query 1185 TGGTCTATGCATTTGATCGTGCACTCGAAGTGA-CTTTTTCGTCATTTGGTGCGCCTTTG 1243
|| ||||||| ||||||||||||||||||| || |||| |||||||||||||| ||||||
Sbjct 1159 TGATCTATGCCTTTGATCGTGCACTCGAAG-GATCTTTGTCGTCATTTGGTGCTCCTTTG 1217
Query 1244 GTTGGGATCATGTCGGA-AAAACTTTTTGGGTTTGACGCAAAAGGAATTGATC-ATGTTA 1301
|||||||| ||||||| |||| | || || |||||| |||| |||| ||| | | |||
Sbjct 1218 GTTGGGATTTTGTCGGAGAAAA-TGTTCGGATTTGACTCAAATGGAACTGA-CTTTATTA 1275
Query 1302 ACGACTCTGGTCGTG-AGGCTGAGGCACTGGGGAAAGGGATCATGTGGATGATGGCTCTC 1360
| || |||||||||| | || ||||| || || |||||| | | ||||||||| ||
Sbjct 1276 AAGATTCTGGTCGTGCA-GCCGAGGCGTTGTCCAAGGGGATCTTCTCAATGATGGCTGTC 1334
Query 1361 CCGTTTGGATTGTGTTGTCTTTGTTACACACCGTTGCATTTCCTTTTCCGGAAAGATCGA 1420
|||||||||||||||||||||||||||||||| || |||| ||||| | ||||||||||
Sbjct 1335 CCGTTTGGATTGTGTTGTCTTTGTTACACACCATTATATTTTCTTTTTCAGAAAGATCGA 1394
Query 1421 AAAATCGATAGAACTACTAGTTCAAGGGAAGTAGAGATG 1459
||||| | ||||||| | |||||||||||| ||||||||
Sbjct 1395 AAAATAGCTAGAACTCCGAGTTCAAGGGAAATAGAGATG 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5