BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18600.1 Length=846 Score E Sequences producing significant alignments: (Bits) Value Ahg343491 jgi|Araly1|343491|fgenesh1_pg.C_scaffold_3003254 876 0.0 > Ahg343491 jgi|Araly1|343491|fgenesh1_pg.C_scaffold_3003254 Length=558 Score = 876 bits (474), Expect = 0.0 Identities = 532/560 (95%), Gaps = 4/560 (1%) Strand=Plus/Plus Query 152 ATGATTGGGTTATTCAAAGTGAAAGAGAAGCAAAGAGAAGAGTCTCAAAGTAAC-AACGG 210 ||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| | Sbjct 1 ATGATTGGGTTATTCAAAGTGAAAGAGAAGCAAAGAGAAGAGTCTCAAAAT-ACTAACAG 59 Query 211 AAGAGGAGCTTCTACTGTCAAGAAGCAATCTGCTGGTGAACTTCGTCTTCACAAAGATAT 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AAGAGGAGCTTCTACTGTCAAGAAGCAATCTGCTGGTGAACTTCGTCTTCACAAAGATAT 119 Query 271 ATCGGAGCTGAACTTACCAAAGTCTTGTAAGATATCTTTTCCGAATGGGAAGAATGACTT 330 ||||||||||||| | |||||||||||||||||||| |||||||| || ||||||||||| Sbjct 120 ATCGGAGCTGAACCTGCCAAAGTCTTGTAAGATATCCTTTCCGAACGGAAAGAATGACTT 179 Query 331 GATGAATTTTGAAGTAACCATTAAACCTGATGAAGGATATTACTTGAGTGGTAACTTTGT 390 |||||| |||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct 180 GATGAACTTTGAAGTAACCATTAAACCTGATGAAGGATATTACATGAATGGTAAATTTGT 239 Query 391 GTTCTCATTCCAAGTCTCTAATATGTACCCCCACGAAGCTCCTAAAGTGAAATGCAAGAC 450 |||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 240 GTTCACATTCCAAGTCTCTAATGTGTATCCCCACGAAGCTCCCAAAGTGAAATGCAAGAC 299 Query 451 CAAGGTGTATCATCCGAATATCGATCTAGAAGGAAACGTCTGTCTGAACATCTTGCGTGA 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CAAGGTGTATCATCCGAATATCGATCTAGAAGGAAACGTCTGTCTGAACATCTTGCGTGA 359 Query 511 AGACTGGAAACCGGTTCTCAACATAAACACAGTTATCTACGGTCTTTTCCATCTCTTCAC 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AGACTGGAAACCGGTTCTCAACATAAACACAGTTATCTACGGTCTTTTCCATCTCTTCAC 419 Query 571 GGAACCCAATTACGAGGATCCTCTGAACCATGAAGCAGCTGCAGTGTTGAGGGATAACCC 630 ||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| Sbjct 420 GGAACCCAATTACGAGGATCCTCTGAACCATGACGCAGCAGCGGTGTTAAGGGATAACCC 479 Query 631 GAAGAC-GTTCGAGTATAATGTCAGAAGGGCAATGATGGGTGGCCAAGTTGGCCAAACCT 689 ||| | ||||||| ||||||||| ||||||||||||||||||||| |||||| |||||| Sbjct 480 AAAG-CTGTTCGAGAATAATGTCAAAAGGGCAATGATGGGTGGCCATGTTGGCGAAACCT 538 Query 690 CATTTCCTCGCTGCATGTAG 709 |||||||||||||||||||| Sbjct 539 CATTTCCTCGCTGCATGTAG 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31298914857 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5