BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18600.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343491 jgi|Araly1|343491|fgenesh1_pg.C_scaffold_3003254 876 0.0
> Ahg343491 jgi|Araly1|343491|fgenesh1_pg.C_scaffold_3003254
Length=558
Score = 876 bits (474), Expect = 0.0
Identities = 532/560 (95%), Gaps = 4/560 (1%)
Strand=Plus/Plus
Query 152 ATGATTGGGTTATTCAAAGTGAAAGAGAAGCAAAGAGAAGAGTCTCAAAGTAAC-AACGG 210
||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct 1 ATGATTGGGTTATTCAAAGTGAAAGAGAAGCAAAGAGAAGAGTCTCAAAAT-ACTAACAG 59
Query 211 AAGAGGAGCTTCTACTGTCAAGAAGCAATCTGCTGGTGAACTTCGTCTTCACAAAGATAT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGAGGAGCTTCTACTGTCAAGAAGCAATCTGCTGGTGAACTTCGTCTTCACAAAGATAT 119
Query 271 ATCGGAGCTGAACTTACCAAAGTCTTGTAAGATATCTTTTCCGAATGGGAAGAATGACTT 330
||||||||||||| | |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 120 ATCGGAGCTGAACCTGCCAAAGTCTTGTAAGATATCCTTTCCGAACGGAAAGAATGACTT 179
Query 331 GATGAATTTTGAAGTAACCATTAAACCTGATGAAGGATATTACTTGAGTGGTAACTTTGT 390
|||||| |||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 180 GATGAACTTTGAAGTAACCATTAAACCTGATGAAGGATATTACATGAATGGTAAATTTGT 239
Query 391 GTTCTCATTCCAAGTCTCTAATATGTACCCCCACGAAGCTCCTAAAGTGAAATGCAAGAC 450
|||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 240 GTTCACATTCCAAGTCTCTAATGTGTATCCCCACGAAGCTCCCAAAGTGAAATGCAAGAC 299
Query 451 CAAGGTGTATCATCCGAATATCGATCTAGAAGGAAACGTCTGTCTGAACATCTTGCGTGA 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAGGTGTATCATCCGAATATCGATCTAGAAGGAAACGTCTGTCTGAACATCTTGCGTGA 359
Query 511 AGACTGGAAACCGGTTCTCAACATAAACACAGTTATCTACGGTCTTTTCCATCTCTTCAC 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGACTGGAAACCGGTTCTCAACATAAACACAGTTATCTACGGTCTTTTCCATCTCTTCAC 419
Query 571 GGAACCCAATTACGAGGATCCTCTGAACCATGAAGCAGCTGCAGTGTTGAGGGATAACCC 630
||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 420 GGAACCCAATTACGAGGATCCTCTGAACCATGACGCAGCAGCGGTGTTAAGGGATAACCC 479
Query 631 GAAGAC-GTTCGAGTATAATGTCAGAAGGGCAATGATGGGTGGCCAAGTTGGCCAAACCT 689
||| | ||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 480 AAAG-CTGTTCGAGAATAATGTCAAAAGGGCAATGATGGGTGGCCATGTTGGCGAAACCT 538
Query 690 CATTTCCTCGCTGCATGTAG 709
||||||||||||||||||||
Sbjct 539 CATTTCCTCGCTGCATGTAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5