BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18620.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480765 jgi|Araly1|480765|fgenesh2_kg.3__3466__AT2G18620.1 728 0.0
Ahg490952 jgi|Araly1|490952|fgenesh2_kg.7__385__AT4G36810.1 556 9e-158
Ahg932378 jgi|Araly1|932378|scaffold_400366.1 285 5e-76
> Ahg480765 jgi|Araly1|480765|fgenesh2_kg.3__3466__AT2G18620.1
Length=1014
Score = 728 bits (394), Expect = 0.0
Identities = 528/592 (89%), Gaps = 12/592 (2%)
Strand=Plus/Plus
Query 490 TTTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTATATCGTTCGCGTTTGAGC 549
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 425 TTTTCGGCGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTTTATCTTTCGCGTTTGAGC 484
Query 550 ACTTAGCAAC---GTCAACGG---CTGTTTCTCCGGCTAGAGTTGTTCGAGCAATCGGAG 603
| |||| || | | ||| | |||||||||| ||||| ||||||||||| ||||
Sbjct 485 ATTTAGTGACGGAGACGCCGGAAATTATTTCTCCGGCGAGAGTGGTTCGAGCAATTGGAG 544
Query 604 AGTTAGCGAAAGCCATTGGATCAAAAGGGCTCGTGGCGGGTCAAGTAGTGGATCTAACCA 663
| ||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 545 AATTAGCGAAAGCTATTGGATCAGAAGGGCTTGTGGCGGGTCAAGTCGTGGATCTAACCA 604
Query 664 GTGGAGGAATGGACCAAAACGACGTCGGCTTAGAGGTTCTTGAGTTTATCCACGTTCATA 723
||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 605 GTGAAGGAATGGACCAAAACGACGTCGGATTAGAGCTTCTTGAGTTTATCCACGTTCATA 664
Query 724 AAACCGCCGTGTTGTTAGAGGCGGCTACGGTGTTAGGAGCCATCGTTGGTGGTGGTTCTG 783
||||||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 665 AAACCGCCGTGTTGTTAGAGGCGGCGACGGTGTTAGGTGCCATCGTCGGCGGTGGAACTA 724
Query 784 ATGAAGA-AGTTGAGAAGCTGAG-AAGATTCGCGAGATGCATTGGATTGTTGTTTCAGGT 841
||||||| | |||||| | | || ||| || |||||||| ||||| ||||||||||||||
Sbjct 725 ATGAAGAGA-TTGAGAGGTTAAGGAAGTTT-GCGAGATGTATTGGTTTGTTGTTTCAGGT 782
Query 842 GGTGGACGATATTTTGGACGTGACGAAGTCGTCGGAGGAATTGGG-AAAGACCGCCGGAA 900
|||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| |
Sbjct 783 GGTGGACGGTATTTTGGATGTGACGAAGTCGTCGGAGGAATTGGGGAAA-ACCGCCGGGA 841
Query 901 AAGATCTGATTGCCGATAAGCTGACGTATCCGAAACTAATGGGTCTTGAGAAATCTAAAG 960
||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 842 AAGATTTGATCGCCGGTAAGCTGACGTATCCGAAACTAATGGCTCTTGAGAAATCTAAAG 901
Query 961 ACTTTGCAGATAAGTTGTTGAGCGATGCTCACGAACAGCTTCATGGGTTTGATTCGAGTA 1020
||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||||| ||
Sbjct 902 ACTTTGCAGATAAATTATTGAGAGATGCTCAAGAACAACTTCATGGATTTGATTCGAATA 961
Query 1021 GAGTTAAACCTTTACTAGCTTTGGCTAATTACATTGCCAAAAGACAGAATTA 1072
||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 962 AAGTTAAACCTTTATTAGCTTTGGCTAATTACATTGGCAAAAGACAGAATTA 1013
Score = 399 bits (216), Expect = 2e-110
Identities = 373/445 (84%), Gaps = 26/445 (6%)
Strand=Plus/Plus
Query 2 aaaaaaaCTTGAGTTTAGAGAAATCACCATGACTA--C--ACTCAATCTATCAATTTTTC 57
||||| |||||||||| ||| | |||||||||| | ||| |||||||||| | ||
Sbjct 1 AAAAACACTTGAGTTTCGAG--A--ACCATGACTACTCTAACTAAATCTATCAACCTGTC 56
Query 58 CATCAGTTAAAATATCCAGCTCCGCATCCATACCCGGATTCATCAAAATCCAACCTTT-C 116
|||| | | || | | | ||| |||| |||||||||||||||||||||||||||| |
Sbjct 57 CATCTG-T-CAA-A---A-C-CCGGATCCGTACCCGGATTCATCAAAATCCAACCTTTAC 108
Query 117 CTTCTCCGTCGGAAGCTCTCTACCGTTTTATCGGTCACCGCCAGAGACGAAGGTATCATC 176
|| |||| | |||||||||||| ||| ||| | || |||| ||| || |||||
Sbjct 109 CT-CTCC--C------TCTCTACCGTTTCATCAGTCGTCACCGGAGAAGAAAGTGTCATC 159
Query 177 CACAACCATTTCGATTTCACGTCATACATGATCGGAAAAGCTAATGCCGTCAATGAAGCT 236
||| || | |||||||||| ||| ||||||||||||||||| ||| |||| ||| |||||
Sbjct 160 CACGACAAATTCGATTTCATGTCTTACATGATCGGAAAAGCAAATTCCGTTAATAAAGCT 219
Query 237 CTCGACTCCGCCGTCTCGCTCCGAGAACCAATCAAGATCCATGAAGCGATACGTTACTCG 296
|| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 220 CTTGACTCCGCCGTCTCGCTCCGAGAACCGATCAAGATCCATGCAGCGATGCGTTACTCG 279
Query 297 CTTCTCGCCAGAGGCAAACGAGTGAGACCCGTGCTCTGTATCGCAGCGTGTGAGTTAGTG 356
||||||||| | || ||||||||||||||||||||||| ||||| ||||| || | |||
Sbjct 280 CTTCTCGCCGGGGGTAAACGAGTGAGACCCGTGCTCTGCATCGCCGCGTGCGAATAAGTC 339
Query 357 GGCGGCGAAGAATCCGTGGCGTTACCGGCGGCGTGCGCCGTGGAAATGATCCACACAATG 416
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 340 GGCGGCGAAGAATCCCTCGCGTTACCGGCGGCCTGCGCCGTGGAAATGATCCACACGATG 399
Query 417 TCGTTGATCCACGACGATCTTCCAT 441
|||||||| ||||||||||||||||
Sbjct 400 TCGTTGATTCACGACGATCTTCCAT 424
> Ahg490952 jgi|Araly1|490952|fgenesh2_kg.7__385__AT4G36810.1
Length=1372
Score = 556 bits (301), Expect = 9e-158
Identities = 716/912 (79%), Gaps = 45/912 (5%)
Strand=Plus/Plus
Query 185 TTTCGATTTCACGTCATACATGATCGGAAAAG-CTAATGCCGTCAATGAAGCTCTCGACT 243
||||||||||| ||| ||||| || |||| | ||| | ||||| ||||| | || |
Sbjct 301 TTTCGATTTCATGTCGTACATCATTACCAAAGCCGAAT-CAGTCAACAAAGCTTTAGATT 359
Query 244 CCGCCG-TCTCGCTCCGAGAACCAATCAAGATCCATGAAGCGATACGTTACTCGCTTCTC 302
| || | || | ||||| || ||| |||||||||| ||||| || |||||||| ||||||
Sbjct 360 CAGCTGTTC-CTCTCCGTGAGCCACTCAAGATCCACGAAGCCATGCGTTACTCTCTTCTC 418
Query 303 GCCAGAGGCAAACGAGTGAGACCCGTGCTCTGTATCGCAGCGTGTGAGTTAGTGGGCGGC 362
||| | |||||| |||| ||||| || ||||| ||||| || ||||| | || ||||||
Sbjct 419 GCCGGTGGCAAAAGAGTTAGACCAGTTCTCTGCATCGCCGCTTGTGAACTCGTCGGCGGC 478
Query 363 GAAGAATCCGTGGCGT-TACCGGCGGCGTGCGCCGTGGAAATGATCCACACAATGTCGTT 421
|| ||||| || | | || ||||| |||||||| || ||||| ||||| ||||||||
Sbjct 479 GATGAATCAACCGC-TATGCCAGCGGCCTGCGCCGTCGAGATGATTCACACCATGTCGTT 537
Query 422 GATCCACGACGATCTTCCATGTATGGATAACGACGATCTCCGCCGCGGAAAACCAACGAA 481
||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 538 GATCCACGACGATCTACCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGACGAA 597
Query 482 CCACAAAGTTTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTATATCGTTCGC 541
||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 598 CCACAAAGTGTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTCTCTCGTTCGC 657
Query 542 GTTT-GAGCACTTAGCAACGTCAACGGCT---G-T-TT----CTCCGGCT-AGAGTTGTT 590
||| ||||| ||||| || | || || | | || |||||| | ||||| |||
Sbjct 658 -TTTCGAGCATTTAGCGTCGGCGACTTCTTCTGATGTTGTATCTCCGG-TGAGAGTGGTT 715
Query 591 CGAGCAATCGGAGAGTTAGCGAAAGCCATTGGATCAAAAGGGCTCGTGGCGGGTCAAGTA 650
||||| | ||||| || || ||||| |||||| || ||||| | ||||||||||||||
Sbjct 716 CGAGCCGTTGGAGAATTGGCTAAAGCAATTGGAACAGAAGGGTTAGTGGCGGGTCAAGTC 775
Query 651 GTGGATC-TAACCAGTGGAGGAATGGACCAAAACGACGTCGGCTTAGAGGTTCTTG-AGT 708
|| || | | | |||| ||| | || |||||||||||| |||||| | ||| |||
Sbjct 776 GTTGA-CATTAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCAT-TTGGAGT 833
Query 709 TTATCCACGTT-CATAAAACCGCCGTGTTG-TTAGAGGCGGCTACGGTGTTAGGAGCCAT 766
||||||| || |||||||| || | |||| || || || || |||| || ||||| ||
Sbjct 834 TTATCCAT-TTGCATAAAACGGCGGCGTTGCTT-GAAGCCTCTGCGGTTTTGGGAGCGAT 891
Query 767 CGTTGGTGGTGGTTCTGATGAAGAAGTT-GAGAAGCTGAG-AAGATTCGCGAGATGCATT 824
||||||||| || |||||| || | | |||| | | || ||| || |||||||| |||
Sbjct 892 CGTTGGTGGAGGAAGTGATGATGA-GATCGAGAGGTTAAGGAAGTTT-GCGAGATGTATT 949
Query 825 GGATTGTTGTTTCAGGTGGTGGACGATATTTTGGACGTGACGAAGTCGTCGGAGGAATT- 883
|| ||||||||||||||||| || ||||| ||||| |||||||| |||||| | || ||
Sbjct 950 GGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTA 1009
Query 884 GGGAAAGACCGCCGGAAAAGATCTGATTGCCGATAAGCTGACGTATCCGAA-ACTAATGG 942
|||||| || || || |||||| ||||||| ||||| |||||||||| || | || |||
Sbjct 1010 GGGAAA-ACTGCTGGGAAAGATTTGATTGCGGATAAATTGACGTATCCTAAGATTA-TGG 1067
Query 943 GTCTTG-AGAAATCTAAAGACTTTGCAGATAAGTTGT-TGAGCGATGCTCACGAACAGCT 1000
|| ||| ||||||| | ||| ||||| || |||||| | || || |||| || |||||
Sbjct 1068 GT-TTGGAGAAATCGAGAGAGTTTGCTGACAAGTTGAAT-AGAGAGGCTCGTGATCAGCT 1125
Query 1001 TC-ATGGGTTTGATTC-GAGTAGAGT-TAAACCTTTACTAGCTTTGGCTAATTACATTGC 1057
| | ||||||||||| || || || | ||||| | ||||||||||||||||||||
Sbjct 1126 TTTA-GGGTTTGATTCTGA-TA-AGGCTGCTCCTTTGTTGGCTTTGGCTAATTACATTGC 1182
Query 1058 CAAAAGACAGAA 1069
| | ||||||||
Sbjct 1183 CTATAGACAGAA 1194
> Ahg932378 jgi|Araly1|932378|scaffold_400366.1
Length=1161
Score = 285 bits (154), Expect = 5e-76
Identities = 547/731 (75%), Gaps = 49/731 (7%)
Strand=Plus/Plus
Query 259 GAGAACCAATCAAGATCCATGAAGCGATACGTTACTCGCTTCTCGCCAG-AGGCAAACGA 317
|||| ||| |||||||||| ||||| || |||||| || |||| | | | || |||||
Sbjct 330 GAGAGCCACTCAAGATCCACGAAGCCATGCGTTACGCGATTCTTG-CGGCTGGAAAACGT 388
Query 318 GTGAGACCCGTGCTCTGTATCGCAGCGTGTGAGTTAGTGGGCGG-CGAAGAATCCGTGGC 376
|| || || | |||||| | || | || ||| |||| ||||| | ||||| || ||
Sbjct 389 GTTAGGCCAATACTCTGTCTTGCTTCTTGCGAGCTAGTAGGCGGTC-AAGAAAACGCCGC 447
Query 377 GTTACCGGCGGCGTGCGCCGTGGAAATGATCCACACAATGTCGT-TGATCCACGACGATC 435
| || ||||| || || || || ||||||||||| ||||| | | ||| | ||||||
Sbjct 448 AATGCCTGCGGCTTGTGCGGTTGAGATGATCCACACGATGTC-TCTAATCAAAGACGAT- 505
Query 436 TT-CCATGTATGGATAACGACGATCTCCGCCGCGGAAAACCAACGAAC-CACAAAGTTTT 493
|| || |||||||| ||||| ||| | || || ||||| || ||| || || ||||| |
Sbjct 506 TTGCCTTGTATGGACAACGATGATTTGCGTCGTGGAAAGCCCACG-ACGCATAAAGTCTA 564
Query 494 CGGTGA-AGACGTCGCGGTT-T-T-AGCCGGAGACGCGCTTATATCGTTCGCGTTTGAGC 549
|||||| || || || || | | | || | | | ||| | || || || || ||||
Sbjct 565 CGGTGAGGGA-GTTGCCATTCTCTCTGGTGG-GGCTCTCTTGTCTC-TT-GCCTTCGAGC 620
Query 550 ACTTAGCAACGTCAACGGCT--G-TTTCTCCGGCTAGAGTTGTTCGAGCAATCG-GAGAG 605
|| | | ||| |||||| | | ||| ||| ||| | ||| | ||| | | ||||
Sbjct 621 ACAT-G--ACG---ACGGCTGAGATATCTTCGGAGAGAATGGTTTGGGCAGT-GAGAGAA 673
Query 606 TTAGCGAAAG-CCATTGGAT-CAAAAGGGCTCGTGGCGGGTCAAGTAG-TGGATCTAACC 662
|| || | | | ||||| | ||| ||| | || ||||| |||| | ||||| ||| |
Sbjct 674 TTGGC-TAGGTCTATTGG-TACAAGAGGTTTAGTCGCGGGACAAG-CGATGGATATAAGC 730
Query 663 AGTGGAGGAATGGACCAAAACGACGTCGGCTTAGAG-GTTCTTGAGTTTATCCACGTTCA 721
|||| ||| ||||| |||||| ||||| |||||| || | ||||||||||| || ||
Sbjct 731 AGTGAAGGTTTGGACTTAAACGAAGTCGGATTAGAGCATT-TGGAGTTTATCCATGTCCA 789
Query 722 TAAAACCGCCGTGTTGTTAGAGGCGGCTACGG-TGTTAGGAGCCATCGTTGGTGGTGGTT 780
||||||||| || ||||| || | || ||| | || |||||||| |||||||||| |
Sbjct 790 TAAAACCGCGGTTTTGTTGGAAACTGCCGCGGTTCTT-GGAGCCATTATTGGTGGTGGAT 848
Query 781 CTGATGAAGAAG-TTGAGAAG-CTGAG-AAGATTCGCGAGATGCATTGGATTGTTGTTTC 837
||||||||| || |||| ||| |||| ||| || || || |||||||||||||||||||
Sbjct 849 CTGATGAAG-AGATTGA-AAGTGTGAGAAAG-TTTGCAAGGTGCATTGGATTGTTGTTTC 905
Query 838 AGGTGGTGGACGATATTTTGGACGTGACGAAGTCGTCGGAGGAATTGGGAAAGACCGCCG 897
|||||||||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||
Sbjct 906 AGGTGGTGGATGATATTTTGGACGAGACAAAGTCATCGGAGGAATTGGGAAAAACCGCCG 965
Query 898 GAAAAGATCTGATTGCCG-ATAAGCTGACGTATCCGAAACTAATGGGTCTTG-AGAAATC 955
||||||||| | | ||| | ||||| ||||||||||| | ||||| ||| |||||||
Sbjct 966 GAAAAGATCAGCTCACCGGA-AAGCTAACGTATCCGAAGTTGATGGGG-TTGGAGAAATC 1023
Query 956 TAAAGACTTTG 966
||||| ||||
Sbjct 1024 GAAAGAATTTG 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5