BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18630.1
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319811 jgi|Araly1|319811|fgenesh1_pm.C_scaffold_3002827 1814 0.0
> Ahg319811 jgi|Araly1|319811|fgenesh1_pm.C_scaffold_3002827
Length=1197
Score = 1814 bits (982), Expect = 0.0
Identities = 1128/1197 (94%), Gaps = 15/1197 (1%)
Strand=Plus/Plus
Query 394 ATGATGGGAGGAAAATCTAGCAAGAGCAAAAAGAATGTTGAATTTGGTTCACCGTCAACG 453
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 1 ATGATGGGAGGAAAATCTAGCAAGAACAAAAAAAATGTTGAATTTGGTTCACCGTCGACG 60
Query 454 CCAGTTCAAATCAAGATAAACTCAGAGTACACAGAGCATTTAAGCTCATACGAAAGAGCT 513
|| |||||||||||||| |||||||||||| |||||||||| || || ||||| ||||||
Sbjct 61 CCTGTTCAAATCAAGATTAACTCAGAGTACTCAGAGCATTTGAGTTCTTACGAGAGAGCT 120
Query 514 TGTAGTGAAGATCCAAAGCTTGAATCTTTTGACTCTGCGCTTCACGAAAGAACTAACAGA 573
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 121 TGTAGTGAAGATCCAAAGCTTGAATCTTTTGACTCTGCGCTTCATGAACGAACTAACCGA 180
Query 574 GTCATCAACAAGCTTGCTTCAGGAGTTGAGATCAAGTCTTTGTCGTTTGATTCACTTAGG 633
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 181 GTCATCAACAAGCTTGCTTCAGGAGTAGAGATTAAGTCTTTGTCGTTTGATTCGCTTAGG 240
Query 634 GAAGTGACACAATGTCTTTTAGATATGAATCAAGATGTGGTCAAAGTTATATTGCAGGAT 693
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GAAGTGACGCAATGTCTTTTAGATATGAATCAAGATGTGGTTAAAGTTATATTGCAGGAT 300
Query 694 AAAGAAGATATATGGAACAATCAAGATTTGTTCTCTCTTGTGAATTTGTATTTTGAAAGT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAAGATATATGGAACAATCAAGATTTGTTCTCTCTTGTGAATTTGTATTTTGAAAGT 360
Query 754 ACTGCAAAGACTATGGATTTCTGTTCTGAGCTTGAGAATTGTCTTAACCGCGCGAGGCGG 813
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 361 ACTGCAAAGACTATGGATTTCTGTTCTGAGCTTGAGAATTGTCTTAACCGAGCGAGGAGG 420
Query 814 AGTCAAGTGATTATTCAGTTTGCTGTTAACCAGTTTGAGGAAGA----GA-AT----G-- 862
||||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 421 AGTCAAGTGATTATTCAGTTTGCTGTTAAGCAGTTTGAGGAAGAGGCGGAGATACCGGTA 480
Query 863 -A---GGATAAGGAGAATAGAAAGTATGAGAAGACTCTTGAGGAGCTTAAGAGGTTTAAA 918
| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 481 AATGGGGATAAGGAGAATAGAAAGTATGAGAAGACGCTTAAGGAGCTTAAGAGGTTTAAA 540
Query 919 GTAGCTGGTGAACCGTTTACGAAAGAGTTCTTTGCTCTTTTTGATTTGGTTTACAAGCAA 978
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 GTAGCGGGTGAGCCGTTTACGAAAGAGTTCTTTGCTCTTTTCGATTTGGTTTACAAGCAA 600
Query 979 CAGGTTATGATGCTTGAGGAGCTTCATAAGTTAAAGAGAAAACTCGATAAGAGGCTTAGG 1038
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 601 CAGGTTATGATGCTTGAGGAGCTTCATAAGTTAAAGAAAAAACTCGATAAGAAGCTTAAG 660
Query 1039 AATATCAAAACATGGAGAAGGGTGTCGAATATGGTGTTTGTGACTGCGTTTGTCTCTGTG 1098
||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AATATCAAAACGTGGCGAAGGGTATCGAATATGGTGTTTGTGACTGCGTTTGTCTCTGTG 720
Query 1099 CTTATCTTCTCGGTGGTTGCAGCCGCTGTGGCTGCACCGCCTGTTGTGGCGGCTATAGCT 1158
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 CTTATCTTCTCCGTGGTTGCAGCCGCTGTGGCTGCACCGCCTGTTGTGGCAGCTATAGCT 780
Query 1159 GGTGCATTGGCTGTTCCTGTAGGTTCTGTTGGGAAATGGTGCAACACTTTGTGGACGAAG 1218
|| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 781 GGGGCATTGGCTGTTCCAGTGGGTTCTGTTGGGAAATGGTGCAACACGCTGTGGACGAAA 840
Query 1219 TATGAGAAAGTGGTTAGAGGGCAGAAGGAGATTATTACATCGATTAGAATCGGGACTTAT 1278
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 TATGAGAAAGTGGTTAGAGGGCAGAAGGAGATTATTACATCGATTAGGATCGGGACTTAT 900
Query 1279 ATCTCGGTTAAGGAGATGGATAATATAAGTATTCTTGTGCGTAAAGTGGAAGTAGAGATT 1338
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 ATTTCGGTTAAGGAGATGGATAATATAAGTATTCTTGTGCGTAAAGTGGAAGTTGAGATT 960
Query 1339 GAATCTTTGTTGAAGAAAGCTGAGTTTGCTATTACTGAGGAGAAAGAAGTGAGGCTTGCT 1398
||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 961 GAATCTTTGCTGAAGAAAGCTGAGTTTGCTATTACGGAAGAGAAAGAAGTGAGGCTTGCG 1020
Query 1399 ATAGATGAGATCAAGAAGAAGCTCGATGTGTTTACTGAAACCATTGAAGAACTTGGGGAA 1458
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTGATGAGATCAAGAAGAAGCTCGATGTGTTTACTGAAACCATTGAAGAACTTGGGGAA 1080
Query 1459 CATGCGGGTAAGTATTGTAGCGATGTGACAAAGGCGAGAACCGTGATTCTGCAGAGGATA 1518
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1081 CATGCGGGTAAGTATTGTAGCGATGTGACTAAGGCGAGAACTGTGATTCTGCAGAGGATA 1140
Query 1519 ATCCGATACCCGGCTGGTTCACCGAAGGATGAAGCTCCTTGGACGGAGATGATGTAG 1575
||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||
Sbjct 1141 ATCCGATACCCGGCTAGCTCACCGAAGGATGAAGCTCCTTGGACAGAGATGGTGTAG 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5