BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18640.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480767 jgi|Araly1|480767|fgenesh2_kg.3__3468__AT2G18640.1 1674 0.0
Ahg931766 jgi|Araly1|931766|scaffold_304223.1 1391 0.0
Ahg932378 jgi|Araly1|932378|scaffold_400366.1 553 1e-156
Ahg490952 jgi|Araly1|490952|fgenesh2_kg.7__385__AT4G36810.1 322 4e-87
> Ahg480767 jgi|Araly1|480767|fgenesh2_kg.3__3468__AT2G18640.1
Length=1134
Score = 1674 bits (906), Expect = 0.0
Identities = 1059/1135 (93%), Gaps = 2/1135 (0%)
Strand=Plus/Plus
Query 3 TATTGTTGATCAAAATGGAAGCTCAAAATATCTTTCTCTATCTTTTGATCGTCTTTCTAT 62
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TATTGTTGATCAAAATGGAAGCTCAAAATATCTTTCTCTATCTTTTAATCGTCTTTCTAT 60
Query 63 CTCTACACTTCGTGTTTACAACTCTGAAAGGACGGCTGAGTCCCGCGAATACACGGCGGC 122
||||||| || |||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 61 CTCTACATTTTGTGTTTGCAACTCTGAAAGGACGGCTGAGTCCGGCTAATACACGGCGGC 120
Query 123 TTATCCGCCTTCTCCATATCCCGATCAAATCTCCGGTCGCCGCTGCTATTTTCGCTAGAA 182
||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||
Sbjct 121 TTATCCGCCTTCTCCATCTCCCGATCAAATCACCAGCCGCCGCTGCTATTTTCGCCAGAA 180
Query 183 AAGACACCCGTGAGTTTCTTGATTCATCAATCAAATTAGTAAACGAAGAAGACGATTTCG 242
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 AAGACATCCGTGAGTTTCTTGATTCATCAATCAAATTAGTAAACGAAGAAGATGATTTCG 240
Query 243 GTTTCAGTTTCGATTTCAAACCGTACATGATCAGCAAAGCAGAGACAATAAACAGAGCAT 302
| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 241 GCTTCAACTTCGATTTCAAACCATACATGATCAACAAAGCAGAGACAATAAACAGAGCAT 300
Query 303 TAGATGAAGCAATTCCACTTATTGAGCCACTCAACATCCACAAGGCAATGCGTTACGCGA 362
|||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 301 TAGACGAAGCCATTCCACTCATTGAGCCTCTCAACATCCACAAGGCAATGCGTTACGCGA 360
Query 363 TTCTCGCAGGCGGAAAACGTGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCG 422
||||||| || || |||||||||||||||||||||||||| || || || ||||||||||
Sbjct 361 TTCTCGCCGGAGGCAAACGTGTCAGGCCAATACTCTGCCTCGCTGCGTGTGAGCTAGTCG 420
Query 423 GCGGGGAAGAGCGTTTAGCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGT 482
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 421 GCGGGGAAGAGCGTTTGGCGATTCAAGCGGCTTGTGCGGTTGAAATGATCCACACAATGT 480
Query 483 CACTCATCAAAGACGATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGGAAACCAA 542
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 481 CACTCATCAAAGACGATCTTCCTTGTATGGATAACGACGATCTCCGGCGAGGCAAACCAA 540
Query 543 CAACACATAAAGTCTTCGGAGAAAGCGTAGCCATACTCTCCGGCGGCGCACTTTTAGCTC 602
||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 541 CAACACACAAAGTATTCGGAGAAAGTGTAGCTATTCTCTCCGGCGGCGCACTTTTAGCTC 600
Query 603 TAGCTTTCGAGCATTTGACGGAAGCTGACGTGTCATCCAAGAAAATGGTTCGAGCCGTTA 662
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 601 TAGCTTTCGAGCATTTGACGGAAGCTGACGTGTCTTCCAAGAAAATGGTTCGAGTCGTTA 660
Query 663 AAGAATTGGCTAAGTCTATTGGAACGAAAGGACTCGTAGCGGGACAGGCGAAGGATTTAA 722
|||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct 661 AAGAATTGGCTAAGTCTATTGGAACGAAAGGACTTGTGGCGGGACAAGCGATGGATTTAA 720
Query 723 GCAGTGAAGGGTTGGAACAAAACGATGTCGGATTAGAGGATCTTGAATATATTCACGTTC 782
||||||||||| |||| | |||||| |||||||| |||||||||||||||||||||||||
Sbjct 721 GCAGTGAAGGGCTGGATCCAAACGACGTCGGATTGGAGGATCTTGAATATATTCACGTTC 780
Query 783 ATAAAACCGGTTCGTTGCTTGAAGCATCTGCGGTTATCGGAGCGGTTATAGGCGGTGGAA 842
||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 781 ATAAAACCGGTGCGTTGCTCGAAGCATCAGCGGTTATCGGAGCGGTTATTGGCGGTGGAT 840
Query 843 CAGAGAAAGAGATAGAGAAAGTGAGAAACTTTGCGAGGTGTATCGGATTGTTGTTTCAGG 902
||||| ||||||||||||| |||||| |||||||||||||||| || |||||||||||||
Sbjct 841 CAGAGGAAGAGATAGAGAAGGTGAGATACTTTGCGAGGTGTATTGGCTTGTTGTTTCAGG 900
Query 903 TGGTTGATGATATCTTGGATGAGACCAAGTCGTCGGAGGAATTGGGAAAAACCGCCGGAA 962
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 TTGTTGATGATATCTTGGATGAGACCAAGTCCTCGGAGGAATTGGGAAAAACCGCCGGAA 960
Query 963 AAGATAAGGTCGCCGGAAAGCTGACGTATCCAAAAGTGATTGGTGTTGAGAAATCTAAGG 1022
||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 961 AAGATCAGGTCGCCGGAAAGCTGACGTATCCGAAAGTGATGGGTCTTGAGAAATCTAAGG 1020
Query 1023 AGTTTGTGGAGAAGTTGAAGAGAGATGCGAGAGAACATC-TTCAAGGGTTTGATTCTGAC 1081
|||| ||| |||||||||||||||| || | |||||| | ||||||||||||||||||||
Sbjct 1021 AGTTCGTGAAGAAGTTGAAGAGAGAAGCTAAAGAACA-CATTCAAGGGTTTGATTCTGAC 1079
Query 1082 AAAGTCAAACCTTTGATAGCTCTTACTAACTTCATTGCCAACAGAAACCACTGAA 1136
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 AAAGTGAAACCTTTGATAGCTCTTACTAACTTCATTGCCAACAGAAACAACTGAA 1134
> Ahg931766 jgi|Araly1|931766|scaffold_304223.1
Length=1252
Score = 1391 bits (753), Expect = 0.0
Identities = 1007/1127 (89%), Gaps = 27/1127 (2%)
Strand=Plus/Plus
Query 24 CTCAAAATATCTTTCTCTATCTTTTGATCGTCTTTCTATCTCTACACTTCGTGTTTACAA 83
|||||| || ||||| |||||| | ||||| |||||||||||||||||||||||| |||
Sbjct 133 CTCAAACCATTTTTCTGTATCTTGTAATCGTTTTTCTATCTCTACACTTCGTGTTTGCAA 192
Query 84 CTCTGAAAGGACGGCTGAGTCCCGCGAATACACGGCGGCTTATCCGCCTTCTCCATATC- 142
|||| ||| ||| || |||||||||| ||| |||||||||||||| || |||| | |
Sbjct 193 CTCTTAAACAACGACTAAGTCCCGCGATTACGCGGCGGCTTATCCGTCTCCTCC--ACCG 250
Query 143 CCG-ATCAAATCTCCGGTC-GCCG-CTGCTATTTTCGCT-AGAAAAGACACCCGTGAGTT 198
||| | ||||| ||||| | |||| || || ||||| || |||||||| ||||||||||
Sbjct 251 CCGTAACAAATTTCCGG-CAGCCGCCT-CTGTTTTC-CTCCGAAAAGACGCCCGTGAGTT 307
Query 199 TCTTGATTCATCAA-TCAAATTAGTAAACGAAGAAGACGATTTCGGTTTCAGTTTCGATT 257
|||||||||||||| |||| ||| |||| |||||||||| |||| | | ||
Sbjct 308 TCTTGATTCATCAACCCAAA-TAGAAAACAAAGAAGACGA------TTTC-G----G-TT 354
Query 258 TCAAACCGTACATGATCAGCAAAGCAGAGACAATAAACAGAGCATTAGATGAAGCAATTC 317
||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||
Sbjct 355 TCAAACCGTACATGATCAGGAAAGCAGAGACAATAAACAGAGCACTAGACAAAGCCATTC 414
Query 318 CACTTATTGAGCCACTCAACATCCACAAGGCAATGCGTTACGCGATTCTCGCAGGCGGAA 377
|||| |||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 415 CACTCATTGAGCCTCTCAACATCTACAAGGCAATGCGTTACACGATTTTCGCAGGCGGAA 474
Query 378 AACGTGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCGGCGGGGAAGAGCGTT 437
|||| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 475 AACGCGTTAGGCCAATACTCTGCCTCGCCGCTTGCGAGCTAGTGGGCGGGGGAGAGCGTT 534
Query 438 TAGCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGTCACTCATCAAAGACG 497
|||||||| |||||||| | | |||||||||||||| ||||||||||| ||||||||||
Sbjct 535 CAGCGATTCCAGCGGCTTTTTCGGTTGAAATGATTCATACAATGTCACTAATCAAAGACG 594
Query 498 ATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGGAAACCAACAACACATAAAGTCT 557
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 595 ATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGTAAACCAACAACACACAAAGTAT 654
Query 558 TCGGAGAAAGCGTAGCCATACTCTCCGGCGGCGCACTTTTAGCTCTAGCTTTCGAGCATT 617
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCGGAGAAAGTGTAGCTATTCTCTCCGGCGGCGCACTTTTAGCTCTAGCTTTCGAGCATT 714
Query 618 TGACGGAAGCTGACGTGTCATCCAAGAAAATGGTTCGAGCCGTTAAAGAATTGGCTAAGT 677
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 715 TGACGGAAGCTGACGTGTCTTCCAAGAAAATGGTTCGAGTCGTTAAAGAATTGGCTAAGT 774
Query 678 CTATTGGAACGAAAGGACTCGTAGCGGGACAGGCGAAGGATTTAAGCAGTGAAGGGTTGG 737
|||||||||| |||||||| || |||||||| |||| ||||||||||||||||||| |||
Sbjct 775 CTATTGGAACAAAAGGACTTGTGGCGGGACAAGCGATGGATTTAAGCAGTGAAGGGCTGG 834
Query 738 AACAAAACGA-TGTCGGATTAGAGGATCTTGAATATATTCACGTTCATAAAACCGGTTCG 796
| | |||||| | || ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 835 ATCCAAACGACT-TCAGATTAGAGGATCTTGAATATATTCACGTTCATAAAACAGGTGCG 893
Query 797 TTGCTTGAAGCATCTGCGGTTATCGGAGCGGTTATAGGCGGTGGAACAGAGAAAGAGATA 856
|||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 894 TTGCTTGAAGCATCAGCGGTTATCGGAGCGGTTATTGGCGGTGGATCAGAGGAAGAGATA 953
Query 857 GAGAAAGTGAGAAACTTTGCGAGGTGTATCGGATTGTTGTTTCAGGTGGTTGATGATATC 916
||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 954 GAGAAGGTGAGAAGCTTTGCGAGGTGTATTGGATTGTTGTTTCAGGTGGTTGATGATATC 1013
Query 917 TTGGATGAGACCAAGTCGTCGGAGGAATTGGGAAAAACCGCCGGAAAAGATAAGGTCGCC 976
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTGGATGAGACCAAGTCCTCGGAGGAATTGGGAAAAACCGCCGGAAAAGATAAGGTCGCC 1073
Query 977 GGAAAGCTGACGTATCCAAAAGTGATTGGTGTTGAGAAATCTAAGGAGTTTGTGGAGAAG 1036
|||||||| |||||||| | |||||||||| ||||||||||||||||||||||| | |||
Sbjct 1074 GGAAAGCTAACGTATCCGAGAGTGATTGGTCTTGAGAAATCTAAGGAGTTTGTGAAAAAG 1133
Query 1037 TTGAAGAGAGATGCGAGAGAACATCTTCAAGGGTTTGATTCTGACAAAGTCAAACCTTTG 1096
||||| ||||| || | ||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1134 TTGAATAGAGAAGCTAAAGAACATATTCAAGGGTTTGATGAGGACAAAGTGAAACCTTTG 1193
Query 1097 ATAGCTCTTACTAACTTCATTGCCAACAGAAACCACTGAAAATTGTT 1143
|| |||||||||||||||||||||||||||||| |||||| || |||
Sbjct 1194 ATTGCTCTTACTAACTTCATTGCCAACAGAAACAACTGAAGAT-GTT 1239
> Ahg932378 jgi|Araly1|932378|scaffold_400366.1
Length=1161
Score = 553 bits (299), Expect = 1e-156
Identities = 704/892 (79%), Gaps = 58/892 (7%)
Strand=Plus/Plus
Query 266 TACATGATCAGCAAAGCAGAGA-CAATAAACAGAGCAT-TAGATGAAGCAATTCCACTTA 323
|||||||| |||||||| || | || | |||| ||| | |||| ||||| |||||| |
Sbjct 272 TACATGATAAGCAAAGCCGA-ATCAGTGAACAAAGC-TCTAGACGAAGCCATTCCAGTCG 329
Query 324 TTGAGCCACTCAACATCCAC-AAGGCAATGCGTTACGCGATTCTCGCAGGC-GGAAAACG 381
||||||||||| |||||| || || ||||||||||||||||| || ||| ||||||||
Sbjct 330 GAGAGCCACTCAAGATCCACGAA-GCCATGCGTTACGCGATTCTTGC-GGCTGGAAAACG 387
Query 382 TGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCGGCGGGGAAG--AGCGTTTA 439
||| |||||||||||||| || || ||||||||||||| ||||| ||| | ||
Sbjct 388 TGTTAGGCCAATACTCTGTCTTGCTTCTTGCGAGCTAGTAGGCGGTCAAGAAAACG--CC 445
Query 440 GCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGTCACTCATCAAAGACGAT 499
|| || | ||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||
Sbjct 446 GCAATGCCTGCGGCTTGTGCGGTTGAGATGATCCACACGATGTCTCTAATCAAAGACGAT 505
Query 500 CTT-CCTTGTATGGACAACGACGATCTCCGACGAGGGAAA-CCAACAACACATAAAGTCT 557
|| ||||||||||||||||| ||| | || || ||||| || || || ||||||||||
Sbjct 506 -TTGCCTTGTATGGACAACGATGATTTGCGTCG-TGGAAAGCCCACGACGCATAAAGTCT 563
Query 558 TCGGAGAAAGCGTAGCCATACTCTCCGGCGGCGCACTTTTAG-CTCTAGCTTTCGAGCAT 616
||| || | || ||||| ||||| || || || || || | |||| || ||||||||
Sbjct 564 ACGGTGAGGGAGTTGCCATTCTCTCTGGTGGGGCTCTCTT-GTCTCTTGCCTTCGAGCAC 622
Query 617 TTGACGGA-AGCTGACG-TGTCATCCAAGAAAATGGTTCGAGCCGTTAAAGAATTGGCTA 674
|||| || ||||| | | || || ||| ||||||| | || || | |||||||||||
Sbjct 623 ATGAC-GACGGCTGA-GATATCTTCGGAGAGAATGGTTTGGGCAGTGAGAGAATTGGCTA 680
Query 675 AGTCTATTGGAACGAA-AGGACTCGTAGCGGGACAGGCGAAGGATTTAAGCAGTGAAGGG 733
||||||||| || || ||| | || |||||||| |||| |||| |||||||||||||
Sbjct 681 GGTCTATTGGTAC-AAGAGGTTTAGTCGCGGGACAAGCGATGGATATAAGCAGTGAAGGT 739
Query 734 TTGGAAC-AAAACGATGTCGGATTAGAGGATCTT-GAATATATTCACGTTCATAAAA-C- 789
|||| || |||||| |||||||||||| || || || | ||| || || ||||||| |
Sbjct 740 TTGG-ACTTAAACGAAGTCGGATTAGAGCAT-TTGGAGTTTATCCATGTCCATAAAACCG 797
Query 790 CGGTTCGTTGCTT-GAAGCAT-CTGCGGTTATCGGAGCGGTTATAGGCGGTGGAACAGA- 846
||||| ||| || ||| | | | |||||| | ||||| |||| || |||||| | ||
Sbjct 798 CGGTT--TTG-TTGGAAAC-TGCCGCGGTTCTTGGAGCCATTATTGGTGGTGGATCTGAT 853
Query 847 GAAAGAGATAGAGAA-AGTGAGAAACTTTGCGAGGTGTATCGGATTGTTGTTTCAGGTGG 905
| ||||||| || || |||||||| ||||| ||||| || |||||||||||||||||||
Sbjct 854 G-AAGAGATTGA-AAGTGTGAGAAAGTTTGCAAGGTGCATTGGATTGTTGTTTCAGGTGG 911
Query 906 TTGATGATATCTTGGATGAGACCAAGTCGTCGGAGGAATTGGGAAAAACCGCCGGAAAAG 965
| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 912 TGGATGATATTTTGGACGAGACAAAGTCATCGGAGGAATTGGGAAAAACCGCCGGAAAAG 971
Query 966 ATAAGGTCGCCGGAAAGCTGACGTATCCAAAAGT-GATTGGTGTTG-AGAAATCTAAGGA 1023
|| || || |||||||||| |||||||| || || ||| || |||| ||||||| || ||
Sbjct 972 ATCAGCTCACCGGAAAGCTAACGTATCCGAA-GTTGATGGG-GTTGGAGAAATCGAAAGA 1029
Query 1024 GTTTGTGGAGA-AGTTGAAGAGAGATGCGA-GAG-AACATCTTCAAGGGTTT-GATTCTG 1079
||||| ||| | |||| || |||||| | | | ||||||||||||||||| | |||||
Sbjct 1030 ATTTGTTAAGAGA-TTGACGAAAGATGC-ACG-GCAACATCTTCAAGGGTTTAG-TTCTG 1085
Query 1080 ACAAAG-TCAAACCTTT-GATAGCTCTTACTAACTTC-ATTGCCAACAGAAA 1128
| |||| | ||||| | |||||||||||| ||| ||||| || |||||
Sbjct 1086 A-AAAGGTTGCTCCTTTAG-TAGCTCTTACTA-CTTTTATTGCTAATAGAAA 1134
> Ahg490952 jgi|Araly1|490952|fgenesh2_kg.7__385__AT4G36810.1
Length=1372
Score = 322 bits (174), Expect = 4e-87
Identities = 646/867 (75%), Gaps = 60/867 (7%)
Strand=Plus/Plus
Query 250 TTTCGATTTCAAACCGTACATGATCAGCAAAGCAGAGA-CAATAAACAGAGCATTAGATG 308
||||||||||| ||||||| || | |||||| || | || | |||| ||| ||||||
Sbjct 301 TTTCGATTTCATGTCGTACATCATTACCAAAGCCGA-ATCAGTCAACAAAGCTTTAGATT 359
Query 309 AAGCAATTCCACTTATTGAGCCACTCAACATCCAC-AAGGCAATGCGTTACGCGATTCTC 367
||| |||| || |||||||||||| |||||| || || ||||||||| | |||||
Sbjct 360 CAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAA-GCCATGCGTTACTCTCTTCTC 418
Query 368 GCAGGCGG-AAAACGTGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCGGCGG 426
|| || || |||| | || || ||| | |||||| | |||||||| || || ||||||||
Sbjct 419 GCCGGTGGCAAAA-GAGTTAGACCAGTTCTCTGCATCGCCGCTTGTGAACTCGTCGGCGG 477
Query 427 GGAAG-AGCGTTTAGCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGTCAC 485
|| | | | || || | |||||| || || || || ||||||||||| |||||
Sbjct 478 CGATGAATC-AACCGCTATGCCAGCGGCCTGCGCCGTCGAGATGATTCACACCATGTCGT 536
Query 486 TCATCAAAGACGATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGGAAACCAAC-A 544
| ||| | |||||||| ||||||||||| |||||||||||||| || || ||||| || |
Sbjct 537 TGATCCACGACGATCTACCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGACGA 596
Query 545 ACACATAAAGTCTTCGGAGAAAG-CGTAGCCATACTCTCCGGCGGCGCACTT-T-TAGCT 601
|| || ||||| ||||| | ||| ||| || | | |||| | ||| ||| | | | |
Sbjct 597 AC-CACAAAGTGTTCGGTG-AAGACGTCGCGGTTTTAGCCGGAGACGCGCTTCTCTCG-T 653
Query 602 CTAGCTTTCGAGCATTT---GAC-G-GA----AGCTGACG-TG--TCATCC-AAGAAAAT 648
| |||||||||||||| | | | || |||| | || || ||| || | |
Sbjct 654 -TCGCTTTCGAGCATTTAGCGTCGGCGACTTCTTCTGATGTTGTATC-TCCGGTGAGAGT 711
Query 649 GGTTCGAGCCGTTAAAGAATTGGCT-AAGTCTATTGGAACGA-AAGGACTCGTAGCGGGA 706
||||||||||||| |||||||||| ||| | |||||||| | |||| | || |||||
Sbjct 712 GGTTCGAGCCGTTGGAGAATTGGCTAAAG-CAATTGGAAC-AGAAGGGTTAGTGGCGGGT 769
Query 707 C-AGGCGAAGGA-TTTAAGCAGTGAAGGGTTGGAACAAAACGATGTCGGATTAGAGGATC 764
| || || || || || ||||||||||| || |||||| ||||| |||||| ||
Sbjct 770 CAAGTCG-TTGACATT-AGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCAT- 826
Query 765 TT-GAATATATTCACGTT-CATAAAACCGG-TTCGTTGCTTGAAGCATCTGCGGTTATCG 821
|| || | ||| || || ||||||| ||| ||||||||||||| ||||||||| | |
Sbjct 827 TTGGAGTTTATCCA-TTTGCATAAAA-CGGCGGCGTTGCTTGAAGCCTCTGCGGTTTTGG 884
Query 822 GAGCGGTTATAGGCGGTGGAACAGA-GAAAGAGATAGAGAAAG-TGAGAAACTTTGCGAG 879
||||| | | || || |||| || | | ||||| ||| | | | || || ||||||||
Sbjct 885 GAGCGATCGTTGGTGGAGGAAGTGATG-ATGAGATCGAG-AGGTTAAGGAAGTTTGCGAG 942
Query 880 GTGTATCGGATTGTTGTTTCAGGTGGTTGATGATATCTTGGATGAGACCAAGTCGTCGGA 939
||||| || |||||||||||||||||||||||||||||||||| ||| || |||||| |
Sbjct 943 ATGTATTGGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAA 1002
Query 940 GGAATT-GGGAAAAACCGCCGGAAAAGATAAGGTCGCCGGA-AAGCTGACGTATCCAAA- 996
|| || ||||||| | || || |||||| | | || ||| || |||||||||| ||
Sbjct 1003 AGAGTTAGGGAAAA-CTGCTGGGAAAGATTTGATTGC-GGATAAATTGACGTATCCTAAG 1060
Query 997 AGTGATTGGTGTTG-AGAAATCTA-AGGAGTTTG-TGGAGAAGTTGAAGAGAGATGCGAG 1053
| | || ||| ||| ||||||| | || |||||| || | |||||||| ||||| || |
Sbjct 1061 ATT-ATGGGT-TTGGAGAAATCGAGAG-AGTTTGCTG-ACAAGTTGAATAGAGAGGCTCG 1116
Query 1054 AGAACATCTTCAAGGGTTTGATTCTGA 1080
|| || ||| |||||||||||||||
Sbjct 1117 TGATCAGCTTTTAGGGTTTGATTCTGA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5