BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18650.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480768 jgi|Araly1|480768|fgenesh2_kg.3__3469__AT2G18650.1 1707 0.0
> Ahg480768 jgi|Araly1|480768|fgenesh2_kg.3__3469__AT2G18650.1
Length=1242
Score = 1707 bits (924), Expect = 0.0
Identities = 1157/1261 (92%), Gaps = 49/1261 (4%)
Strand=Plus/Plus
Query 35 AGAATTTGATCTCTTCTT---CACCACCACCACCATTGATACCTCTCAAATCAAACACAA 91
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 8 AGAATTTGATCTCTTCTTCACCACCACCACCACCATTGATACCTCTCAAATCAAACACAA 67
Query 92 GCTTGTCAAATTTAAACAGCAAAATCACTCCAAATATTCTTCTAATAATCATAATCCTCT 151
|| | || ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 68 GC-T-TC-GATTTAAACAACAAAATCACACCAAATATTCTTCTAATAATCATAATCCTCT 124
Query 152 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATTCTTGTCAAATTCCTCCTCACACCAT 211
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 125 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATCCTTGTCAAATTCCTCCTCACACCAT 184
Query 212 CAAGAGAAAGCAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 271
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CAACACAAAACAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 244
Query 272 AACTCTTTAACCTCCATGATTCTGGCGTTGACCAATCCTTAATCGACACGTTACCTGTTT 331
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 245 AACTCTTTAACCTCCATGATTCTGGCGTCGACCAATCCTTAATCGACACGTTACCTGTAT 304
Query 332 TTCATTACAAGTCCATTGTCGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 391
|||||||||| || || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCATTACAAATCTATCATTGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 364
Query 392 GTGAGTTTGAAACAGAGGATAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 451
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GTGAGTTCGAAACAGAGGACAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 424
Query 452 TTGAGTGTATCGACACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAATC 511
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 425 TTGAGTGTATCGATACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAACC 484
Query 512 TCCTCTCTGGTTTTTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 571
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCCTCTCTGGTTTCTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 544
Query 572 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAACTCTCAACTAG-GT-T- 628
||||||||||||||||||||||||||||||||||||||||||| || ||||| | || |
Sbjct 545 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAATTCCCAACT-GTGTATT 603
Query 629 -ATGATGTGAACAATGATTCTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 687
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GATGATGGGAACAATGATTTTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 663
Query 688 CCGGATGGTGACAT-GGATGGTTTAGATGAAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 746
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 664 CCGGATGGTGA-ATTGGATGGTTTAGATGGAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 722
Query 747 GAAGTTTAGGAACATAGATCATGTTGGTGAAGGAAGTGACCA-GA-AG-AAAAATAGCAT 803
||| |||||||||||||||||||| ||||||||||||| | || | |||||||||||
Sbjct 723 GAAATTTAGGAACATAGATCATGTCAATGAAGGAAGTGACAACGACAACAAAAATAGCAT 782
Query 804 AAGTGGTAATAGTAAAAATGTGGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 863
|||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 783 AAGTGGTAATAGCATTAATGTAGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 842
Query 864 TATTATGGATCAAGAAGCTACACTTAAGGTTCATGTTTCGACCAAGAAACTATCCGGAAA 923
||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 843 TATTATGGACCAAGAAGCTACACTTAAGGTTCACATTTCGACCAAGAAACTA-CC--A-- 897
Query 924 AGACCGGGTGCCGAGCCACAGGACCGTTATGTCCGAATGCGGTTTTGATCCAACAGTTAA 983
| | | | ||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 898 -G---G----C--A---ACAGGGCCGTTGTGTCCGAATGCGGTTTGGATCCAACAGTTAA 944
Query 984 GGGAATTGAGAAGAGTGTTGTGGAGAGGGAGAGCTTTTCTTTATCGAAAATTTGGCTAAG 1043
|||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||| |
Sbjct 945 GGGAATCGAGAAGAGTGTTGTGGAAAGAGAGAGCTTTTCTTTGTCGAAAATTTGGCTAGG 1004
Query 1044 GGGTAAAAAGGAGAAGCAAAAGGGGACTAGTGCTAGAGATTC-GGATTGTTCTTTCG-TG 1101
|||||||||||||||||||||||| |||||||||||||| | ||||||||||| || ||
Sbjct 1005 GGGTAAAAAGGAGAAGCAAAAGGGTTCTAGTGCTAGAGAT-CAGGATTGTTCTT-CGGTG 1062
Query 1102 TCTTCCTCTTCACTCCGGTTTCCAAACCATCGGAT-TCCTC-C-----C---GAAGAGAG 1151
|||||||| |||||||| ||||||||||||||||| || || | | ||||||||
Sbjct 1063 TCTTCCTCCTCACTCCGATTTCCAAACCATCGGATATC-TCGCGAGATCAATGAAGAGAG 1121
Query 1152 TCTTAAGAGCGAAAATTCGGAATCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1211
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TCAAAAGAGCGAAAATTCGGAGTCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1181
Query 1212 CATGCATTGGCTTGCAGGGAGACAAAACAAGATTGTTCAGCCTTCTACATCCAATGTCTA 1271
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1182 CATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCAGCCTTCTACATCCAATGTTTA 1241
Query 1272 G 1272
|
Sbjct 1242 G 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5