BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18650.1 Length=1272 Score E Sequences producing significant alignments: (Bits) Value Ahg480768 jgi|Araly1|480768|fgenesh2_kg.3__3469__AT2G18650.1 1707 0.0 > Ahg480768 jgi|Araly1|480768|fgenesh2_kg.3__3469__AT2G18650.1 Length=1242 Score = 1707 bits (924), Expect = 0.0 Identities = 1157/1261 (92%), Gaps = 49/1261 (4%) Strand=Plus/Plus Query 35 AGAATTTGATCTCTTCTT---CACCACCACCACCATTGATACCTCTCAAATCAAACACAA 91 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 8 AGAATTTGATCTCTTCTTCACCACCACCACCACCATTGATACCTCTCAAATCAAACACAA 67 Query 92 GCTTGTCAAATTTAAACAGCAAAATCACTCCAAATATTCTTCTAATAATCATAATCCTCT 151 || | || ||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 68 GC-T-TC-GATTTAAACAACAAAATCACACCAAATATTCTTCTAATAATCATAATCCTCT 124 Query 152 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATTCTTGTCAAATTCCTCCTCACACCAT 211 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 125 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATCCTTGTCAAATTCCTCCTCACACCAT 184 Query 212 CAAGAGAAAGCAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 271 ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 CAACACAAAACAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 244 Query 272 AACTCTTTAACCTCCATGATTCTGGCGTTGACCAATCCTTAATCGACACGTTACCTGTTT 331 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 245 AACTCTTTAACCTCCATGATTCTGGCGTCGACCAATCCTTAATCGACACGTTACCTGTAT 304 Query 332 TTCATTACAAGTCCATTGTCGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 391 |||||||||| || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 305 TTCATTACAAATCTATCATTGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 364 Query 392 GTGAGTTTGAAACAGAGGATAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 451 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 365 GTGAGTTCGAAACAGAGGACAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 424 Query 452 TTGAGTGTATCGACACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAATC 511 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 425 TTGAGTGTATCGATACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAACC 484 Query 512 TCCTCTCTGGTTTTTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 571 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TCCTCTCTGGTTTCTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 544 Query 572 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAACTCTCAACTAG-GT-T- 628 ||||||||||||||||||||||||||||||||||||||||||| || ||||| | || | Sbjct 545 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAATTCCCAACT-GTGTATT 603 Query 629 -ATGATGTGAACAATGATTCTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 687 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 604 GATGATGGGAACAATGATTTTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 663 Query 688 CCGGATGGTGACAT-GGATGGTTTAGATGAAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 746 ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 664 CCGGATGGTGA-ATTGGATGGTTTAGATGGAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 722 Query 747 GAAGTTTAGGAACATAGATCATGTTGGTGAAGGAAGTGACCA-GA-AG-AAAAATAGCAT 803 ||| |||||||||||||||||||| ||||||||||||| | || | ||||||||||| Sbjct 723 GAAATTTAGGAACATAGATCATGTCAATGAAGGAAGTGACAACGACAACAAAAATAGCAT 782 Query 804 AAGTGGTAATAGTAAAAATGTGGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 863 |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 783 AAGTGGTAATAGCATTAATGTAGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 842 Query 864 TATTATGGATCAAGAAGCTACACTTAAGGTTCATGTTTCGACCAAGAAACTATCCGGAAA 923 ||||||||| ||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 843 TATTATGGACCAAGAAGCTACACTTAAGGTTCACATTTCGACCAAGAAACTA-CC--A-- 897 Query 924 AGACCGGGTGCCGAGCCACAGGACCGTTATGTCCGAATGCGGTTTTGATCCAACAGTTAA 983 | | | | ||||| ||||| |||||||||||||||| |||||||||||||| Sbjct 898 -G---G----C--A---ACAGGGCCGTTGTGTCCGAATGCGGTTTGGATCCAACAGTTAA 944 Query 984 GGGAATTGAGAAGAGTGTTGTGGAGAGGGAGAGCTTTTCTTTATCGAAAATTTGGCTAAG 1043 |||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct 945 GGGAATCGAGAAGAGTGTTGTGGAAAGAGAGAGCTTTTCTTTGTCGAAAATTTGGCTAGG 1004 Query 1044 GGGTAAAAAGGAGAAGCAAAAGGGGACTAGTGCTAGAGATTC-GGATTGTTCTTTCG-TG 1101 |||||||||||||||||||||||| |||||||||||||| | ||||||||||| || || Sbjct 1005 GGGTAAAAAGGAGAAGCAAAAGGGTTCTAGTGCTAGAGAT-CAGGATTGTTCTT-CGGTG 1062 Query 1102 TCTTCCTCTTCACTCCGGTTTCCAAACCATCGGAT-TCCTC-C-----C---GAAGAGAG 1151 |||||||| |||||||| ||||||||||||||||| || || | | |||||||| Sbjct 1063 TCTTCCTCCTCACTCCGATTTCCAAACCATCGGATATC-TCGCGAGATCAATGAAGAGAG 1121 Query 1152 TCTTAAGAGCGAAAATTCGGAATCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1211 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1122 TCAAAAGAGCGAAAATTCGGAGTCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1181 Query 1212 CATGCATTGGCTTGCAGGGAGACAAAACAAGATTGTTCAGCCTTCTACATCCAATGTCTA 1271 ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1182 CATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCAGCCTTCTACATCCAATGTTTA 1241 Query 1272 G 1272 | Sbjct 1242 G 1242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47539277499 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5