BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18660.1

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319814 jgi|Araly1|319814|fgenesh1_pm.C_scaffold_3002830           593    5e-169


> Ahg319814 jgi|Araly1|319814|fgenesh1_pm.C_scaffold_3002830
Length=390

 Score =  593 bits (321),  Expect = 5e-169
 Identities = 366/388 (94%), Gaps = 2/388 (1%)
 Strand=Plus/Plus

Query  13   ATGATAAAAATGGCAGTAAAATTTGTGGTAGTGATGATAGTGTTTGCACAAATCTTAGCT  72
            ||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct  1    ATGATAAAAGTGGTAGTAAAATTTGTTGTAATGATGATAGTGTTTGCACAAATCTTAGCT  60

Query  73   CCAATCGCTGAAGCTGCTCAAGGAAAAGCTGTCTATTACGACCCTCCCTACACTAGGTCT  132
            ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCAATTGCTGAAGCTGCTCTAGGAAAAGCTGTCTATTACGACCCTCCCTACACTAGGTCT  120

Query  133  GCGTGTTACGGAACACAACGTGAGACGCTGGTAGTCGGAGTCAAGAACAATTTGTGGCAA  192
            ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct  121  GCGTGTTACGGAACACAACGTGAGACGATGGTGGTCGGAGTCAAGAACAATTTGTGGCGA  180

Query  193  AATGGTCGAGCTTGTGGTCGGAGGTACAGGGTTCGATGCATTGGTGCTACATACAACTTT  252
            ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  181  AATGGTCAAGCTTGTGGTCGGAGGTACAGGGTTCGATGCATTGGTGCTACGTATAACTTT  240

Query  253  GAC-AGAGCATGCACCGGGCGTACCGTAGACGTGAAGGTAGTTGATTTCTGCCGGGAGCC  311
              |  |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  -CCTGGAGCATGCACTGGTCGTACCGTAGACGTGAAGGTAGTTGATTTCTGCCGGGAGCC  299

Query  312  TTGCAACGGTGACCTTAATCTCTCTCGTGACGCTTTTCGGGTTATCGCTAATACTGATGC  371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  300  TTGCAACGGTGACCTTAATCTCTCTCGTGACGCTTTTCGGGTTATCGCTAATATTGATGC  359

Query  372  CGGTAACATTCGTGTCGTATACACACCG  399
            ||||||||| || ||||| |||||||||
Sbjct  360  CGGTAACATCCGCGTCGTGTACACACCG  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28744679418


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5