BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18670.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480770 jgi|Araly1|480770|fgenesh2_kg.3__3471__AT2G18680.1 1341 0.0
Ahg480771 jgi|Araly1|480771|fgenesh2_kg.3__3472__AT2G18690.1 1070 0.0
Ahg931769 jgi|Araly1|931769|scaffold_304226.1 859 0.0
Ahg930823 jgi|Araly1|930823|scaffold_303280.1 531 1e-149
> Ahg480770 jgi|Araly1|480770|fgenesh2_kg.3__3471__AT2G18680.1
Length=870
Score = 1341 bits (726), Expect = 0.0
Identities = 823/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 1123 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAACGCC 1182
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTCTCAGTCTTGGCATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAAGGCC 60
Query 1183 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 120
Query 1243 GATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGAGTCTTTGTAGATTTTCGCCAG 1302
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||
Sbjct 121 GATCCAAACACCCCGGAATATGCAGCCCATCTTATGAGAGTCTTTGCAGATTTTCGTCAG 180
Query 1303 TTTGTCAATTCTTTATACATCTTCATCGCCGTCTCCTCCATCATCAACCTTTTATCCACT 1362
||||| | ||||||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 181 TTTGTTAGTTCTTTATACATCATCTTGGCCGTCTCCTCCATCATCAACCTCTTATCCACT 240
Query 1363 CTTGTCATGGTTCATGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 1422
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGTCATCGTTCACGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 300
Query 1423 TTTCCGATTCTGACGCTTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTT 1482
||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| |||| |
Sbjct 301 TTTCCTATTCTGACCCTTAAATATTGGAAGGGACTTCTTGTGACTAATTTCTACATTGCT 360
Query 1483 CTCTTCAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTTTCTATCGTTTTCTTC 1542
|||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||
Sbjct 361 CTCTTCAGTCTTGGCTATTGGTTCCTATTCGTTATAATCCTTTTTTCTATCTTTTTCTTC 420
Query 1543 TCTACAAAACTCGATTCCTTGGCAGCCAAATCTCGCGCTTTATTCATTGTATTTGCAGTC 1602
|||||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 421 TCTACAAAACTCGATTCCTTGGTAGCCAAATCTCACGCTTTATGGATTCTATTCGCAGTC 480
Query 1603 TTTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAT 1662
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGAGTCTTACTTAGCTATAGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAA 540
Query 1663 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 600
Query 1723 CTATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGG 1782
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 CTATTCCTCTTGAATCTTTTCTTTGGTTTATTGTCATTTGGATTAGTTCAAATCTTGCGA 660
Query 1783 CTGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGT 1842
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 CTGATCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTGTGAGT 720
Query 1843 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCTTATTTCCAATGT 1902
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCCTATTTCCAATGT 780
Query 1903 AAGAGCCTGCAAGG-ACA-A-G---ACTCGCTGAGGGATGTTGAATATACGAAATTGTCA 1956
|||||||||||||| | | | | |||||||||||||||| |||||||||||||||||
Sbjct 781 AAGAGCCTGCAAGGCAAAGACGTTGACTCGCTGAGGGATGTGGAATATACGAAATTGTCC 840
Query 1957 TCCACTACTCTCATGGGAGGATTGCCTTGA 1986
||||||||| ||||||||||||||||||||
Sbjct 841 TCCACTACTATCATGGGAGGATTGCCTTGA 870
> Ahg480771 jgi|Araly1|480771|fgenesh2_kg.3__3472__AT2G18690.1
Length=1338
Score = 1070 bits (579), Expect = 0.0
Identities = 996/1188 (84%), Gaps = 66/1188 (6%)
Strand=Plus/Plus
Query 926 GTAATATATAAGCACTAAGCAGATGGGCGTTTGATCATATAAACCCTCACTACCATTACC 985
||| ||||||||||||| |||||| || |||||||| |||||||||||||||||||||||
Sbjct 77 GTAGTATATAAGCACTAGGCAGAT-GG-GTTTGATCTTATAAACCCTCACTACCATTACC 134
Query 986 AAAAAGCAAT-AGCCAAGAGCtttttttttca-ttttctttttGAAAGCCATGGATCGGT 1043
||||| |||| |||||||||| |||| ||| ||||||||||||||||||||| ||| |
Sbjct 135 AAAAACCAATAAGCCAAGAGC---TTTTGTCATTTTTCTTTTTGAAAGCCATGGCTCGAT 191
Query 1044 TTTCGTTCTTGAATGTTATAATGGAGGTTGCGGGTATTCTAAATGAATCCCGCAAACT-C 1102
||||||||||||||||| ||| ||| |||| || ||||||||||||||||||||||||
Sbjct 192 TTTCGTTCTTGAATGTTTTAAAGGATGTTGTGGCTATTCTAAATGAATCCCGCAAACTAT 251
Query 1103 TCCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTT 1162
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TTCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTT 311
Query 1163 TAGTTTACTTGTTCAACGC-CATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAA 1221
|||||||||| || ||| | | ||| |||| ||| ||||| ||||||||||||||||||
Sbjct 312 TAGTTTACTTCTTTAAC-CTCTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAA 370
Query 1222 TCAAGTTTGTTACCTATGACAGATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGA 1281
||||||||||| |||| ||||||||||| | ||||||||| || |||| ||||||||||
Sbjct 371 TCAAGTTTGTTGCCTACGACAGATCCAACCTCCCCGGAATACGCAGCCCGTCTTATGAGA 430
Query 1282 GTCTTTGTAGATTTTCGCCAGTTTGTCAATTCTTT-ATACATCTTCATCG-CCGTCTCCT 1339
||||||| ||||||||| || ||||| | | || |||||| |||| || |||||||||
Sbjct 431 GTCTTTGCAGATTTTCGTCAATTTGTGGGT-CATTCATACATTTTCA-CGGCCGTCTCCT 488
Query 1340 CCATCATCAACCT-TTTATCCACTCTTGTCATGGTTCATGCATCGGCTCTTACTCATAAA 1398
||||||||||||| ||| || ||| ||||| || || ||||||||||||||| ||||
Sbjct 489 CCATCATCAACCTCTTT-TCTGTTCTAGTCATCGTCCACGCATCGGCTCTTACTTTTAAA 547
Query 1399 GATGATAGCTTCGAGATCAAAGATTTTCC-GATTCTGACGC-TTAAATATTGGAAGGGAC 1456
||||| | ||| |||||||||||||||| | |||||| || |||||| |||||||||||
Sbjct 548 GATGAAAAATTCAAGATCAAAGATTTTCCTG-TTCTGA-GCCTTAAATCTTGGAAGGGAC 605
Query 1457 CTCTTGTGACCAATTTCTATATTGTTCTCTTCAGTCTTGGCTATTGG-TTCCTATTCTTT 1515
|||||||||| ||||||| |||| ||| ||||||||||||| |||| ||||| ||||||
Sbjct 606 CTCTTGTGACGTATTTCTACATTGCTCTTTTCAGTCTTGGCT-TTGGGTTCCTCTTCTTT 664
Query 1516 ATAGTCCTATTTTCTATCGTTTTCTTCTCTACAAAA--C--T-C-G----A--T-TC--- 1559
||| |||| | | || || |||| |||||||||||| | | | | | | ||
Sbjct 665 ATAATCCTCTGTCCTGTCCTTTTGTTCTCTACAAAATTCGGTTCCGTGGCAAATATCGGT 724
Query 1560 --CTTGGCAGCCAAATCTCGCGCTTTATTCATTGTATTTGCAGTCTTTGAGTCTTACTTA 1617
|||||||| | | || | |||||||| ||| |||| || |||| | |||| || ||
Sbjct 725 TTCTTGGCAGTCGAGGCTGGTGCTTTATTGATTATATTCGCTGTCTCTCAGTCCTATTTC 784
Query 1618 GCTATCGT-TTGGAACTTATCTATGGTCATATCGATACTCGAGGATACTTATGGGATCCA 1676
|||||| | |||||||||||||||||||||||||||||| ||||| ||||||||| | ||
Sbjct 785 GCTATC-TATTGGAACTTATCTATGGTCATATCGATACTAGAGGAAACTTATGGGTTTCA 843
Query 1677 AGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAACTATTCCTCTTGAA 1736
|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct 844 AGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAA 903
Query 1737 TCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGGCTGGTCGATT-GGA 1795
|||||||||| | |||||| |||| ||||||| ||||||||||| ||| || ||| ||
Sbjct 904 TCTTTTCTTTAGTTTATTGGCATTCGGATTAGCTCAAATCTTGCAGCTCATCAATTTGG- 962
Query 1796 GTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGTTCGGTCTTTGTGG 1855
| || || ||| ||||||||||||||||||||||||||||| || ||| |||||||| ||
Sbjct 963 GAAGATCGTTCACGGTTACCTTAACCACCGGTTTGGTCCTTGTGTGTTTGGTCTTTGCGG 1022
Query 1856 TGAGGATGTTTCAGCTTGTGACTTACACCGTTGCTTATTTCCAATGTAAGAGCCTGCAAG 1915
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1023 TGAGGATGTTTCAGCTTGTGACTTACACCGTTGCATATTTCCAATGTAAGAGCCTCCAAG 1082
Query 1916 GACAA-GAC-T-----CGCTGAGGGATGTTGAATATACGAAATTGTCATCCACTACT-CT 1967
| ||| ||| | |||| |||||||| ||||||| || |||||| ||||||||| ||
Sbjct 1083 G-CAAAGACGTTGAGTCGCTCAGGGATGTGGAATATATGACATTGTCTTCCACTACTACT 1141
Query 1968 C--ATGGGAGGATTGCCTTGAT-TAGGCATGTATAATACATAAATATACG-TGGGTCGTT 2023
| |||||| |||||||||||| | || | | || | || | || || ||| | |||
Sbjct 1142 CTCATGGGATGATTGCCTTGATATTT-CAAG-AGAAGATATTTA-AT-CGGTGGATTGTT 1197
Query 2024 TGTTTCTTAAGAATGTTAAAGTTCACCATGGATTT-GGTAAAGTATTT 2070
|||| | | | |||| ||||||||||||||||| |||||||| |||
Sbjct 1198 -GTTTGT-AT-A-TGTTGAAGTTCACCATGGATTTTGGTAAAGTGTTT 1241
> Ahg931769 jgi|Araly1|931769|scaffold_304226.1
Length=587
Score = 859 bits (465), Expect = 0.0
Identities = 521/549 (95%), Gaps = 0/549 (0%)
Strand=Plus/Plus
Query 247 CCGATGCCTCCGACCAATAATTACCGAATCTCCGGCGAACCACCGTCTACTACGCCGTCT 306
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 18 CCGATGCCTCCGACCAATAATTACCGAATCTCCGGCGAGCCACCGTCTACTTCACCGTCT 77
Query 307 CATCCACCGCCAAAACCGAAAACAAGGATTCTCTCTCTATTCCTCGTTGGTGTAATCATG 366
| |||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 78 CCTCCACCGCCAAAGCCGAAAACAAGGATTCTCTCTGTATTCCTCGTCGGTTTAATCATG 137
Query 367 TTTTCAatcttctttctcttcctcgttcttatcggtatcgcctctgttcttatcctccct 426
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 138 TTTTCAATCTTCTTTCTCTTCCTTGTTCTTATCGGCATCGCCTCTGTTCTTATTCTCCCT 197
Query 427 ctcctcctctcttctctccATCGTCACCACCGACGTCGTCGTCGTAATCGCCGACAAGAA 486
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 198 CTCCTCCTCTCTTCTCTCCATCGTCACCACCGACGTCGCCGTCGTAATCGTCGACAAGAA 257
Query 487 TCCTCAGATGGGTTATCTTCAAGATTCGTGAAAAAGCTTCCTCAATTCAAATTCTCCGAA 546
||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 258 TCCTCTGATGGGTTGTCTTCAAGATTCGTGAAAAAACTTCCCCAATTCAAATTCTCCGAA 317
Query 547 CCTAGCACATACACACGGTACGAGAGCGATTGTGTGGTTTGTTTTGATGGATTCAGACAA 606
|| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 318 CCCACCACATACACACGGTACGAGAGCGATTGCGTGGTTTGTTTTGATGGATTCAGACAA 377
Query 607 GGACAATGGTGTCGGAATCTTCCTGGTTGTGGACACGTGTTTCATCGAAAGTGTGTGGAC 666
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 378 GGACAATGGTGTCGGAATCTTCCTGGCTGTGGACACGTGTTTCATCGGAAGTGTGTTGAC 437
Query 667 ACTTGGTTGCTCAAAGCCTCGACGTGTCCTATTTGCAGAGCTAGGGTTAGATTGTGGGAG 726
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 438 ACTTGGTTGCTCAAATCCTCGACGTGTCCTATTTGCAGAGCTAGGGTTAGATTGAGGGAA 497
Query 727 GAAGATCCACAAGAAGGAGAATTATGGAGATGTTTTGGTCATAGAAGAAGTAGTTTGCTA 786
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GAAGATGCACATGAAGGAGAATTATGGAGATGTTTTGGTCATAGAAGAAGTAGTTTGCTA 557
Query 787 GATTTGTAA 795
|||||||||
Sbjct 558 GATTTGTAA 566
> Ahg930823 jgi|Araly1|930823|scaffold_303280.1
Length=880
Score = 531 bits (287), Expect = 1e-149
Identities = 563/693 (81%), Gaps = 31/693 (4%)
Strand=Plus/Plus
Query 1314 TTT-ATACATCTTCATCGCCGT-CTCCTCCATCATCAACCTTTTA-TC-CACTCTTGTCA 1369
||| |||||||||||| || || ||| |||| || |||| | || || | ||| ||||
Sbjct 190 TTTCATACATCTTCATGGCAGTATTCC-CCATTATTAACC-TCTATTCTGA-TCTAGTCA 246
Query 1370 TGGTTCATGCATCGGCTCTTACTCAT-AAAGATGATAGCTTCGAGATCAAAGATTTTCCG 1428
||||| ||||| |||||||||| | ||| |||| | | || |||||||| ||||||||
Sbjct 247 CCGTTCACGCATCAGCTCTTACTC-TGAAAAATGAAAACATCAAGATCAAATATTTTCCG 305
Query 1429 ATTCTGACGC-TTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTTCTCTT 1487
|| |||| | |||||| ||||||||||||||||||||| || |||||||||| ||| ||
Sbjct 306 GTTATGAC-CTTTAAATCTTGGAAGGGACCTCTTGTGACAAAATTCTATATTGCTCTTTT 364
Query 1488 CAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTT-T-CTATCGTT-TTCTTCTC 1544
|| |||||||||| ||||||||| | |||| | | ||| | || || || | || ||
Sbjct 365 CATTCTTGGCTATGGGTTCCTATACGCTATAAT--TTTTTGTCCTCTC-TTAGTGTTTTC 421
Query 1545 TACAAAACTCGATTCCTTGGCAGCCAAATCTCG--CGCTTTATTCATTGTATTTGCAGTC 1602
| ||||||| || ||||| |||||| ||| | | ||||||| ||| |||| | ||||
Sbjct 422 TTCAAAACTTTTTTTCTTGGTAGCCAAGTCT-GTTC-CTTTATTGATTCTATTGGAAGTC 479
Query 1603 TTTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAT 1662
| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TATGAGTCCTATTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTAGAGGAA 539
Query 1663 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 1722
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 540 ACTTATGGGATCAAAGCTTTAAGGAAAGCTGCAAAGATTGCTAAAGGGATGAAGCCAAAA 599
Query 1723 CTATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGG 1782
|||| ||||||||||||| ||| |||||| |||| ||||||| ||||||||||| |
Sbjct 600 ATATTTCTCTTGAATCTTTCCTTCCATTTATTGACATTCGGATTAGGTCAAATCTTGCAG 659
Query 1783 CTGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGT 1842
||| | ||||||| || || ||||||||||||||| ||| ||||| ||| || || ||
Sbjct 660 CTGATAAATTGGAGAAGATCTTTCTCGGTTACCTTAGCCATTGGTTTAGTCTTTGTGTGT 719
Query 1843 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTG-CTTATTTCCAATG 1901
| || |||| | ||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 720 TTGGAATTTGCGCTGATCATGTTTCAGCTTGTGACTTACACCGTTTTCT-ATTTCCAATG 778
Query 1902 TAAGAGCCTGCAAGG-ACA-A-G---ACTCGCT-GAGGGATGTTGAATATACGAAATTGT 1954
||||||||| ||| | | | | | | ||||| | ||||||| ||||||||||||||||
Sbjct 779 TAAGAGCCTCCAAAGCAAAGATGTTGAGTCGCTCG-GGGATGTGGAATATACGAAATTGT 837
Query 1955 CATCCACTACTCTCATGGGAGGATTGCCTTGAT 1987
| |||| |||| |||||||| ||||| | ||||
Sbjct 838 CCTCCAATACTGTCATGGGATGATTGGCATGAT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5