BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18680.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480770 jgi|Araly1|480770|fgenesh2_kg.3__3471__AT2G18680.1 1341 0.0
Ahg480771 jgi|Araly1|480771|fgenesh2_kg.3__3472__AT2G18690.1 839 0.0
Ahg930823 jgi|Araly1|930823|scaffold_303280.1 531 5e-150
> Ahg480770 jgi|Araly1|480770|fgenesh2_kg.3__3471__AT2G18680.1
Length=870
Score = 1341 bits (726), Expect = 0.0
Identities = 823/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAACGCC 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTCTCAGTCTTGGCATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAAGGCC 60
Query 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 120
Query 121 GATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGAGTCTTTGTAGATTTTCGCCAG 180
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||
Sbjct 121 GATCCAAACACCCCGGAATATGCAGCCCATCTTATGAGAGTCTTTGCAGATTTTCGTCAG 180
Query 181 TTTGTCAATTCTTTATACATCTTCATCGCCGTCTCCTCCATCATCAACCTTTTATCCACT 240
||||| | ||||||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 181 TTTGTTAGTTCTTTATACATCATCTTGGCCGTCTCCTCCATCATCAACCTCTTATCCACT 240
Query 241 CTTGTCATGGTTCATGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGTCATCGTTCACGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 300
Query 301 TTTCCGATTCTGACGCTTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTT 360
||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| |||| |
Sbjct 301 TTTCCTATTCTGACCCTTAAATATTGGAAGGGACTTCTTGTGACTAATTTCTACATTGCT 360
Query 361 CTCTTCAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTTTCTATCGTTTTCTTC 420
|||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||
Sbjct 361 CTCTTCAGTCTTGGCTATTGGTTCCTATTCGTTATAATCCTTTTTTCTATCTTTTTCTTC 420
Query 421 TCTACAAAACTCGATTCCTTGGCAGCCAAATCTCGCGCTTTATTCATTGTATTTGCAGTC 480
|||||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 421 TCTACAAAACTCGATTCCTTGGTAGCCAAATCTCACGCTTTATGGATTCTATTCGCAGTC 480
Query 481 TTTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAT 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGAGTCTTACTTAGCTATAGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAA 540
Query 541 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 600
Query 601 CTATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGG 660
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 CTATTCCTCTTGAATCTTTTCTTTGGTTTATTGTCATTTGGATTAGTTCAAATCTTGCGA 660
Query 661 CTGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGT 720
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 CTGATCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTGTGAGT 720
Query 721 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCTTATTTCCAATGT 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCCTATTTCCAATGT 780
Query 781 AAGAGCCTGCAAGG-ACA-A-G---ACTCGCTGAGGGATGTTGAATATACGAAATTGTCA 834
|||||||||||||| | | | | |||||||||||||||| |||||||||||||||||
Sbjct 781 AAGAGCCTGCAAGGCAAAGACGTTGACTCGCTGAGGGATGTGGAATATACGAAATTGTCC 840
Query 835 TCCACTACTCTCATGGGAGGATTGCCTTGA 864
||||||||| ||||||||||||||||||||
Sbjct 841 TCCACTACTATCATGGGAGGATTGCCTTGA 870
> Ahg480771 jgi|Araly1|480771|fgenesh2_kg.3__3472__AT2G18690.1
Length=1338
Score = 839 bits (454), Expect = 0.0
Identities = 832/1006 (83%), Gaps = 60/1006 (6%)
Strand=Plus/Plus
Query 1 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAACGC- 59
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 272 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTCTTTAAC-CT 330
Query 60 CATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGAC 119
| ||| |||| ||| ||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 331 CTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAATCAAGTTTGTTGCCTACGAC 390
Query 120 AGATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGAGTCTTTGTAGATTTTCGCCA 179
|||||||| | ||||||||| || |||| ||||||||||||||||| ||||||||| ||
Sbjct 391 AGATCCAACCTCCCCGGAATACGCAGCCCGTCTTATGAGAGTCTTTGCAGATTTTCGTCA 450
Query 180 GTTTGTCAATTCTTT-ATACATCTTCATCG-CCGTCTCCTCCATCATCAACCT-TTTATC 236
||||| | | || |||||| |||| || |||||||||||||||||||||| ||| ||
Sbjct 451 ATTTGTGGGT-CATTCATACATTTTCA-CGGCCGTCTCCTCCATCATCAACCTCTTT-TC 507
Query 237 CACTCTTGTCATGGTTCATGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAA 296
||| ||||| || || ||||||||||||||| ||||||||| | ||| |||||||
Sbjct 508 TGTTCTAGTCATCGTCCACGCATCGGCTCTTACTTTTAAAGATGAAAAATTCAAGATCAA 567
Query 297 AGATTTTCC-GATTCTGACGC-TTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTAT 354
||||||||| | |||||| || |||||| ||||||||||||||||||||| |||||||
Sbjct 568 AGATTTTCCTG-TTCTGA-GCCTTAAATCTTGGAAGGGACCTCTTGTGACGTATTTCTAC 625
Query 355 ATTGTTCTCTTCAGTCTTGGCTATTGG-TTCCTATTCTTTATAGTCCTATTTTCTATCGT 413
|||| ||| ||||||||||||| |||| ||||| ||||||||| |||| | | || || |
Sbjct 626 ATTGCTCTTTTCAGTCTTGGCT-TTGGGTTCCTCTTCTTTATAATCCTCTGTCCTGTCCT 684
Query 414 TTTCTTCTCTACAAAA--C--T-C-G----A--T-TC-----CTTGGCAGCCAAATCTCG 455
||| |||||||||||| | | | | | | || |||||||| | | || |
Sbjct 685 TTTGTTCTCTACAAAATTCGGTTCCGTGGCAAATATCGGTTTCTTGGCAGTCGAGGCTGG 744
Query 456 CGCTTTATTCATTGTATTTGCAGTCTTTGAGTCTTACTTAGCTATCGT-TTGGAACTTAT 514
|||||||| ||| |||| || |||| | |||| || || |||||| | |||||||||||
Sbjct 745 TGCTTTATTGATTATATTCGCTGTCTCTCAGTCCTATTTCGCTATC-TATTGGAACTTAT 803
Query 515 CTATGGTCATATCGATACTCGAGGATACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAA 574
||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||
Sbjct 804 CTATGGTCATATCGATACTAGAGGAAACTTATGGGTTTCAAGCTTTGGGGAAAGCTGCAA 863
Query 575 AGATTGTTAAAGGGATGAAGCCAAAACTATTCCTCTTGAATCTTTTCTTTGGGTTATTGT 634
|||||||||||||||||||| ||||||| || |||||||||||||||||| | ||||||
Sbjct 864 AGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTTCTTTAGTTTATTGG 923
Query 635 CATTTGGATTAGTTCAAATCTTGCGGCTGGTCGATT-GGAGTAGTTCATTCTCGGTTACC 693
|||| ||||||| ||||||||||| ||| || ||| || | || || ||| ||||||||
Sbjct 924 CATTCGGATTAGCTCAAATCTTGCAGCTCATCAATTTGG-GAAGATCGTTCACGGTTACC 982
Query 694 TTAACCACCGGTTTGGTCCTTATGAGTTCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTG 753
||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||
Sbjct 983 TTAACCACCGGTTTGGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGATGTTTCAGCTTGTG 1042
Query 754 ACTTACACCGTTGCTTATTTCCAATGTAAGAGCCTGCAAGGACAA-GAC-T-----CGCT 806
|||||||||||||| |||||||||||||||||||| ||||| ||| ||| | ||||
Sbjct 1043 ACTTACACCGTTGCATATTTCCAATGTAAGAGCCTCCAAGG-CAAAGACGTTGAGTCGCT 1101
Query 807 GAGGGATGTTGAATATACGAAATTGTCATCCACTACT-CTC--ATGGGAGGATTGCCTTG 863
|||||||| ||||||| || |||||| ||||||||| ||| |||||| ||||||||||
Sbjct 1102 CAGGGATGTGGAATATATGACATTGTCTTCCACTACTACTCTCATGGGATGATTGCCTTG 1161
Query 864 AT-TAGGCATGTATAATACATAAATATACG-TGGGTCGTTTGTTTCTTAAGAATGTTAAA 921
|| | || | | || | || | || || ||| | ||| |||| | | | |||| ||
Sbjct 1162 ATATTT-CAAG-AGAAGATATTTA-AT-CGGTGGATTGTT-GTTTGT-AT-A-TGTTGAA 1213
Query 922 GTTCACCATGGATTT-GGTAAAGTATTTCT-AATAATCCAAGGTTT 965
||||||||||||||| |||||||| ||| | ||||||| || ||||
Sbjct 1214 GTTCACCATGGATTTTGGTAAAGTGTTT-TGAATAATCAAAAGTTT 1258
> Ahg930823 jgi|Araly1|930823|scaffold_303280.1
Length=880
Score = 531 bits (287), Expect = 5e-150
Identities = 563/693 (81%), Gaps = 31/693 (4%)
Strand=Plus/Plus
Query 192 TTT-ATACATCTTCATCGCCGT-CTCCTCCATCATCAACCTTTTA-TC-CACTCTTGTCA 247
||| |||||||||||| || || ||| |||| || |||| | || || | ||| ||||
Sbjct 190 TTTCATACATCTTCATGGCAGTATTCC-CCATTATTAACC-TCTATTCTGA-TCTAGTCA 246
Query 248 TGGTTCATGCATCGGCTCTTACTCAT-AAAGATGATAGCTTCGAGATCAAAGATTTTCCG 306
||||| ||||| |||||||||| | ||| |||| | | || |||||||| ||||||||
Sbjct 247 CCGTTCACGCATCAGCTCTTACTC-TGAAAAATGAAAACATCAAGATCAAATATTTTCCG 305
Query 307 ATTCTGACGC-TTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTTCTCTT 365
|| |||| | |||||| ||||||||||||||||||||| || |||||||||| ||| ||
Sbjct 306 GTTATGAC-CTTTAAATCTTGGAAGGGACCTCTTGTGACAAAATTCTATATTGCTCTTTT 364
Query 366 CAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTT-T-CTATCGTT-TTCTTCTC 422
|| |||||||||| ||||||||| | |||| | | ||| | || || || | || ||
Sbjct 365 CATTCTTGGCTATGGGTTCCTATACGCTATAAT--TTTTTGTCCTCTC-TTAGTGTTTTC 421
Query 423 TACAAAACTCGATTCCTTGGCAGCCAAATCTCG--CGCTTTATTCATTGTATTTGCAGTC 480
| ||||||| || ||||| |||||| ||| | | ||||||| ||| |||| | ||||
Sbjct 422 TTCAAAACTTTTTTTCTTGGTAGCCAAGTCT-GTTC-CTTTATTGATTCTATTGGAAGTC 479
Query 481 TTTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAT 540
| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TATGAGTCCTATTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTAGAGGAA 539
Query 541 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 600
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 540 ACTTATGGGATCAAAGCTTTAAGGAAAGCTGCAAAGATTGCTAAAGGGATGAAGCCAAAA 599
Query 601 CTATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGG 660
|||| ||||||||||||| ||| |||||| |||| ||||||| ||||||||||| |
Sbjct 600 ATATTTCTCTTGAATCTTTCCTTCCATTTATTGACATTCGGATTAGGTCAAATCTTGCAG 659
Query 661 CTGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGT 720
||| | ||||||| || || ||||||||||||||| ||| ||||| ||| || || ||
Sbjct 660 CTGATAAATTGGAGAAGATCTTTCTCGGTTACCTTAGCCATTGGTTTAGTCTTTGTGTGT 719
Query 721 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTG-CTTATTTCCAATG 779
| || |||| | ||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 720 TTGGAATTTGCGCTGATCATGTTTCAGCTTGTGACTTACACCGTTTTCT-ATTTCCAATG 778
Query 780 TAAGAGCCTGCAAGG-ACA-A-G---ACTCGCT-GAGGGATGTTGAATATACGAAATTGT 832
||||||||| ||| | | | | | | ||||| | ||||||| ||||||||||||||||
Sbjct 779 TAAGAGCCTCCAAAGCAAAGATGTTGAGTCGCTCG-GGGATGTGGAATATACGAAATTGT 837
Query 833 CATCCACTACTCTCATGGGAGGATTGCCTTGAT 865
| |||| |||| |||||||| ||||| | ||||
Sbjct 838 CCTCCAATACTGTCATGGGATGATTGGCATGAT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5